FastQCFastQC Report
Thu 2 Feb 2017
SRR4062602_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062602_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1561304
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGTTA3950.019.493642
TAACGGC2800.018.85707536
GTATCAA25800.018.4203071
CGGATAC600.007413201518.33326729
TTAACGG3000.017.59993635
CGTCGAA750.001291130717.59993622
ACCGTCG3700.017.243188
GTATTAG5400.016.7052481
ATACCGT3700.016.6485886
CGGCGTT4650.016.55907841
GGACCGT1206.4091637E-616.499946
TAGGACG3000.016.1332744
CGTTATT5050.016.11875344
CGTCGTA3600.015.88883110
GCGTTAT4850.015.8762343
CTATAGA2950.015.6624651
AGCGAAA5200.015.6537917
TAGCGTA3250.015.5691747
GCGAAAG5400.015.48142518
CGCAATA4550.015.47247136
Produced by FastQC (version 0.11.5)