##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062601_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1794106 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.275832085729604 32.0 32.0 32.0 32.0 32.0 2 31.410735486086107 32.0 32.0 32.0 32.0 32.0 3 31.486321321036773 32.0 32.0 32.0 32.0 32.0 4 31.58485730497529 32.0 32.0 32.0 32.0 32.0 5 31.51694548705595 32.0 32.0 32.0 32.0 32.0 6 35.112463812060156 36.0 36.0 36.0 36.0 36.0 7 35.121684003063365 36.0 36.0 36.0 36.0 36.0 8 35.06048249100109 36.0 36.0 36.0 36.0 36.0 9 35.19041405580272 36.0 36.0 36.0 36.0 36.0 10 35.06023055493934 36.0 36.0 36.0 36.0 36.0 11 35.20152042298504 36.0 36.0 36.0 36.0 36.0 12 35.107391647985125 36.0 36.0 36.0 36.0 36.0 13 35.15201610161272 36.0 36.0 36.0 36.0 36.0 14 35.10616708265844 36.0 36.0 36.0 36.0 36.0 15 35.06964638655687 36.0 36.0 36.0 36.0 36.0 16 35.08332618028143 36.0 36.0 36.0 36.0 36.0 17 35.05061852532682 36.0 36.0 36.0 36.0 36.0 18 35.05869106953547 36.0 36.0 36.0 36.0 36.0 19 35.04854451186273 36.0 36.0 36.0 36.0 36.0 20 35.04147190857174 36.0 36.0 36.0 36.0 36.0 21 35.03941015748234 36.0 36.0 36.0 36.0 36.0 22 35.022959624459205 36.0 36.0 36.0 36.0 36.0 23 34.98524390420633 36.0 36.0 36.0 36.0 36.0 24 34.95784028368446 36.0 36.0 36.0 32.0 36.0 25 34.929482427459696 36.0 36.0 36.0 32.0 36.0 26 34.887512777951805 36.0 36.0 36.0 32.0 36.0 27 34.87631890200468 36.0 36.0 36.0 32.0 36.0 28 34.86509882916617 36.0 36.0 36.0 32.0 36.0 29 34.841094115955244 36.0 36.0 36.0 32.0 36.0 30 34.820293226821605 36.0 36.0 36.0 32.0 36.0 31 34.8277303570692 36.0 36.0 36.0 32.0 36.0 32 34.788803448625664 36.0 36.0 36.0 32.0 36.0 33 34.76856997301163 36.0 36.0 36.0 32.0 36.0 34 34.749946770146245 36.0 36.0 36.0 32.0 36.0 35 34.72869496005253 36.0 36.0 36.0 32.0 36.0 36 34.70422483398417 36.0 36.0 36.0 32.0 36.0 37 34.69883050388327 36.0 36.0 36.0 32.0 36.0 38 34.65933172287479 36.0 36.0 36.0 32.0 36.0 39 34.656827411535325 36.0 36.0 36.0 32.0 36.0 40 34.64007979461637 36.0 36.0 36.0 32.0 36.0 41 34.61471897424121 36.0 36.0 36.0 32.0 36.0 42 34.583473886158345 36.0 36.0 36.0 32.0 36.0 43 34.57872277334784 36.0 36.0 36.0 32.0 36.0 44 34.54401356441593 36.0 36.0 36.0 32.0 36.0 45 34.51044587109123 36.0 36.0 36.0 32.0 36.0 46 34.51244352340386 36.0 36.0 36.0 32.0 36.0 47 34.48592223647878 36.0 36.0 36.0 32.0 36.0 48 34.45364933844488 36.0 36.0 36.0 32.0 36.0 49 34.44372238875518 36.0 36.0 36.0 32.0 36.0 50 33.91585335537588 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 12.0 21 58.0 22 150.0 23 474.0 24 1340.0 25 2931.0 26 6075.0 27 11057.0 28 18325.0 29 28002.0 30 40278.0 31 57440.0 32 84637.0 33 139510.0 34 309481.0 35 1094334.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.90876965693016 17.801991601224863 11.527940449306039 26.76129829253894 2 16.80634281124462 19.927191893562597 35.585171047768966 27.681294247423814 3 18.689889543072738 23.029631128375176 28.445738320142823 29.834741008409267 4 12.867432917731033 15.15046794972195 34.782339698445405 37.19975943410161 5 15.052622308826791 35.872908289699716 32.89081024198124 16.183659159492247 6 35.75518576218093 34.19640543003576 15.996533070991223 14.051875736792088 7 31.219166346636733 29.828889422736598 20.169800730504324 18.782143500122345 8 28.830292078617433 32.11566094756943 19.056789286697665 19.99725768711548 9 27.427643628637327 14.002907297562128 18.47672322594094 40.0927258478596 10 16.597570043241593 26.022988608253918 30.627120136714332 26.752321211790164 11 38.287537079748915 20.748829779288403 21.3792830523949 19.58435008856779 12 25.02321490480496 23.281623270865822 27.690058446936806 24.005103377392416 13 29.751976750537594 18.549294188860635 24.97695230939532 26.72177675120645 14 23.91915527845066 19.192957383788915 24.16986510273083 32.71802223502959 15 25.683265091360262 26.557683882669142 21.76978394810563 25.989267077864962 16 26.723114464808656 25.100300651132095 22.995408298060426 25.18117658599882 17 24.77640674519789 25.39900095089142 24.557579095103634 25.26701320880706 18 25.865249879327084 23.942007885821685 25.503677040264066 24.689065194587165 19 26.084244743621614 24.593139981695618 24.751213139023 24.571402135659767 20 26.141822166583246 23.625694356966644 24.370856571462333 25.861626904987776 21 27.239471915260303 23.678756996520832 24.03364126757282 25.048129820646047 22 26.363436720015425 23.65367486647946 24.33362354286759 25.649264870637523 23 24.790452738021056 23.381951791031298 25.12298604430285 26.704609426644804 24 25.300177358528426 24.477985135772357 24.57156934986004 25.65026815583917 25 25.462040704395395 23.779196992819823 24.715986680831566 26.04277562195322 26 25.25703609485727 24.613205685728715 24.999804916766344 25.129953302647667 27 26.008050806362608 23.973332679340018 24.348338392491858 25.670278121805513 28 25.186917606874953 23.869715613235783 25.193940603286542 25.749426176602718 29 25.0244968803404 24.27398381143589 25.19906850542833 25.502450802795373 30 25.03447399429019 24.350400700961927 25.3304988668451 25.28462643790278 31 25.519395175089986 24.177166789476207 24.20330794278599 26.100130092647817 32 25.361990874563713 24.13803866661167 24.192439019768063 26.307531439056554 33 24.976339190660976 23.75099353103997 24.860682702136884 26.41198457616217 34 25.833646395474965 23.973555631607052 24.912965008756448 25.279832964161535 35 26.38924344492466 23.709914575838887 24.919151934166656 24.9816900450698 36 25.07599885402535 24.412102740863695 24.555572524700324 25.956325880410635 37 26.2112160596977 24.04974956886605 24.469791639958842 25.269242731477405 38 25.030182163149778 23.829194038702283 25.049746224582048 26.090877573565884 39 25.68867168383585 23.79251839077513 24.503847598748347 26.014962326640678 40 25.84223005775578 23.983811435890633 24.963073530772427 25.210884975581155 41 24.778078887200643 24.387076348889085 25.44504059403402 25.38980416987625 42 26.16155344221579 24.42665037628769 24.766150940914304 24.64564524058222 43 25.33412184118441 23.295000406887887 25.0714840706179 26.2993936813098 44 24.968424385181255 23.848033505266688 24.93096840431948 26.252573705232578 45 24.88331235724088 24.24817708652666 25.04690358317736 25.821606973055104 46 24.783652693876505 23.899479740884875 25.281895272631605 26.034972292607016 47 24.930299547518374 23.71214409850923 25.67440273874565 25.68315361522675 48 25.75221307994065 24.545929839151086 24.544369173281847 25.157487907626418 49 24.530880561126267 24.55016593222474 24.893345209257426 26.02560829739157 50 24.36734507325654 24.81492174932808 24.987821232413246 25.829911945002138 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 29.0 1 30.5 2 32.0 3 128.0 4 224.0 5 265.0 6 306.0 7 275.0 8 244.0 9 346.5 10 449.0 11 677.0 12 905.0 13 1593.5 14 2282.0 15 2925.0 16 3568.0 17 4022.5 18 4477.0 19 4766.0 20 5055.0 21 5647.5 22 6240.0 23 6762.0 24 7284.0 25 8283.0 26 9282.0 27 11309.5 28 13337.0 29 15363.5 30 17390.0 31 19429.5 32 21469.0 33 24898.5 34 28328.0 35 33247.5 36 38167.0 37 46983.0 38 55799.0 39 62691.0 40 69583.0 41 77571.0 42 85559.0 43 88424.5 44 91290.0 45 102157.0 46 113024.0 47 122572.0 48 132120.0 49 137008.0 50 141896.0 51 137035.5 52 132175.0 53 131351.0 54 130527.0 55 133479.5 56 136432.0 57 133080.5 58 129729.0 59 120049.0 60 110369.0 61 97747.0 62 85125.0 63 74877.5 64 64630.0 65 55246.0 66 45862.0 67 40129.0 68 34396.0 69 31355.5 70 28315.0 71 22112.0 72 15909.0 73 14393.5 74 12878.0 75 9367.0 76 5856.0 77 5358.5 78 4861.0 79 4195.5 80 3530.0 81 2819.5 82 2109.0 83 1822.0 84 1535.0 85 1239.0 86 943.0 87 672.0 88 401.0 89 262.5 90 124.0 91 78.0 92 32.0 93 23.0 94 14.0 95 10.5 96 7.0 97 6.0 98 5.0 99 4.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015216492225097068 2 0.004180355006894799 3 7.245948678617652E-4 4 1.6721420027579196E-4 5 0.0 6 6.131187343445705E-4 7 1.6721420027579196E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1794106.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.80222023203684 #Duplication Level Percentage of deduplicated Percentage of total 1 81.43318548410144 44.62719365096033 2 11.117450664116122 12.185219594273917 3 3.0462933712645737 5.008309206703053 4 1.3187488778967318 2.8908146574899263 5 0.727622819963523 1.9937673012748336 6 0.46816757593282043 1.5393973561061554 7 0.3259563018119931 1.250419032654478 8 0.2399225717707083 1.0518631693452016 9 0.18279636746257055 0.9015882108570112 >10 0.9738929038107439 9.514453998634634 >50 0.07469962346824469 2.8768048414940814 >100 0.07601936911549236 8.90556830293605 >500 0.011663247640925658 4.389652957916728 >1k 0.003580821644143842 2.8649477193535606 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2406 0.13410578862118513 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2285 0.12736148254339488 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2037 0.11353844198726275 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2035 0.11342696585374555 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2011 0.1120892522515392 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1919 0.10696135010974826 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 1832 0.1021121383017503 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.5738066758597315E-5 2 0.0 0.0 0.0 0.0 5.5738066758597315E-5 3 0.0 0.0 0.0 0.0 5.5738066758597315E-5 4 0.0 0.0 0.0 5.5738066758597315E-5 5.5738066758597315E-5 5 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 5.5738066758597315E-5 6 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 5.5738066758597315E-5 7 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 5.5738066758597315E-5 8 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 5.5738066758597315E-5 9 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 5.5738066758597315E-5 10 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 5.5738066758597315E-5 11 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 5.5738066758597315E-5 12 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 1.1147613351719463E-4 13 1.1147613351719463E-4 0.0 0.0 1.6721420027579196E-4 2.786903337929866E-4 14 1.1147613351719463E-4 0.0 0.0 2.2295226703438926E-4 2.786903337929866E-4 15 1.1147613351719463E-4 0.0 0.0 2.786903337929866E-4 3.901664673101812E-4 16 1.1147613351719463E-4 0.0 0.0 3.3442840055158393E-4 3.901664673101812E-4 17 1.1147613351719463E-4 0.0 0.0 3.3442840055158393E-4 3.901664673101812E-4 18 1.1147613351719463E-4 0.0 0.0 3.901664673101812E-4 4.459045340687785E-4 19 1.1147613351719463E-4 0.0 0.0 5.016426008273759E-4 4.459045340687785E-4 20 1.1147613351719463E-4 0.0 0.0 5.573806675859732E-4 6.688568011031679E-4 21 1.1147613351719463E-4 0.0 0.0 6.131187343445705E-4 6.688568011031679E-4 22 1.1147613351719463E-4 0.0 0.0 0.0013377136022063357 7.245948678617652E-4 23 1.1147613351719463E-4 0.0 0.0 0.0017278800695165169 7.245948678617652E-4 24 1.1147613351719463E-4 0.0 0.0 0.002619689137654074 7.245948678617652E-4 25 1.1147613351719463E-4 0.0 0.0 0.00312133173848145 7.245948678617652E-4 26 1.1147613351719463E-4 0.0 0.0 0.004124616940136202 7.803329346203624E-4 27 1.1147613351719463E-4 0.0 0.0 0.0059639731431699134 7.803329346203624E-4 28 1.1147613351719463E-4 0.0 0.0 0.011370565618753853 7.803329346203624E-4 29 1.1147613351719463E-4 0.0 0.0 0.02591820104274775 7.803329346203624E-4 30 1.1147613351719463E-4 0.0 0.0 0.055013471890735556 7.803329346203624E-4 31 1.1147613351719463E-4 0.0 0.0 0.12440736500518922 8.360710013789597E-4 32 1.1147613351719463E-4 0.0 0.0 0.2057292044059827 8.360710013789597E-4 33 1.1147613351719463E-4 0.0 0.0 0.28866744774277553 8.360710013789597E-4 34 1.1147613351719463E-4 0.0 0.0 0.3870451355716998 8.91809068137557E-4 35 1.1147613351719463E-4 0.0 0.0 0.49723929355344665 8.91809068137557E-4 36 1.1147613351719463E-4 0.0 0.0 0.6555911412146217 8.91809068137557E-4 37 1.1147613351719463E-4 0.0 0.0 0.8692908891670837 8.91809068137557E-4 38 1.1147613351719463E-4 0.0 0.0 1.1561747187735842 8.91809068137557E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGATCG 60 2.8737623E-4 21.999735 5 GTTATAT 215 0.0 20.473999 1 TAGACGG 55 0.004484756 19.99976 5 CGCAATA 735 0.0 18.5576 36 ATACGAA 740 0.0 18.134916 40 GTATAGA 240 0.0 17.424227 1 ATACCGT 525 0.0 17.180746 6 GTATCAA 3400 0.0 17.154503 1 CAATACG 810 0.0 16.839304 38 GTATTAC 170 2.4556357E-9 16.830832 1 CTAGCGG 785 0.0 16.815084 29 TCTAGCG 800 0.0 16.774797 28 CGAATGC 800 0.0 16.774797 43 TACGAAT 825 0.0 16.533134 41 GCCGGTC 865 0.0 16.531591 8 GTATTAT 120 6.383618E-6 16.507162 1 TTACGCT 80 0.0019890154 16.499802 4 CGCCGGT 815 0.0 16.466059 7 TACCGTC 535 0.0 16.4484 7 ACCGTCG 485 0.0 16.3297 8 >>END_MODULE