##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062600_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 708919 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.18143821790642 32.0 32.0 32.0 32.0 32.0 2 31.37783865293496 32.0 32.0 32.0 32.0 32.0 3 31.480197314502785 32.0 32.0 32.0 32.0 32.0 4 31.600807708638083 32.0 32.0 32.0 32.0 32.0 5 31.527161777297547 32.0 32.0 32.0 32.0 32.0 6 35.11988252536609 36.0 36.0 36.0 36.0 36.0 7 35.14152110466781 36.0 36.0 36.0 36.0 36.0 8 35.08144371924014 36.0 36.0 36.0 36.0 36.0 9 35.19544687051694 36.0 36.0 36.0 36.0 36.0 10 35.08319709303884 36.0 36.0 36.0 36.0 36.0 11 35.211258267869816 36.0 36.0 36.0 36.0 36.0 12 35.11656056615777 36.0 36.0 36.0 36.0 36.0 13 35.161273713922185 36.0 36.0 36.0 36.0 36.0 14 35.125268190018886 36.0 36.0 36.0 36.0 36.0 15 35.07949004047007 36.0 36.0 36.0 36.0 36.0 16 35.0817991900344 36.0 36.0 36.0 36.0 36.0 17 35.06015496833912 36.0 36.0 36.0 36.0 36.0 18 35.07048478034867 36.0 36.0 36.0 36.0 36.0 19 35.03586305346591 36.0 36.0 36.0 36.0 36.0 20 35.023204343514564 36.0 36.0 36.0 36.0 36.0 21 34.983287230275955 36.0 36.0 36.0 36.0 36.0 22 34.955351739761525 36.0 36.0 36.0 36.0 36.0 23 34.88498262848083 36.0 36.0 36.0 32.0 36.0 24 34.860542600776675 36.0 36.0 36.0 32.0 36.0 25 34.827781453170246 36.0 36.0 36.0 32.0 36.0 26 34.772629877320256 36.0 36.0 36.0 32.0 36.0 27 34.729864765932355 36.0 36.0 36.0 32.0 36.0 28 34.689633089252794 36.0 36.0 36.0 32.0 36.0 29 34.65272619297832 36.0 36.0 36.0 32.0 36.0 30 34.61205582019949 36.0 36.0 36.0 32.0 36.0 31 34.594221624755434 36.0 36.0 36.0 32.0 36.0 32 34.55556135468227 36.0 36.0 36.0 32.0 36.0 33 34.513178515458044 36.0 36.0 36.0 32.0 36.0 34 34.4708535107678 36.0 36.0 36.0 32.0 36.0 35 34.38622889215834 36.0 36.0 36.0 32.0 36.0 36 34.34441029229009 36.0 36.0 36.0 32.0 36.0 37 34.27914190478743 36.0 36.0 36.0 32.0 36.0 38 34.19252552125137 36.0 36.0 36.0 32.0 36.0 39 34.04567799706314 36.0 36.0 36.0 32.0 36.0 40 33.96732066710019 36.0 36.0 36.0 32.0 36.0 41 33.965172325752306 36.0 36.0 36.0 32.0 36.0 42 33.81839533148357 36.0 36.0 36.0 32.0 36.0 43 33.84684145861516 36.0 36.0 36.0 32.0 36.0 44 33.8231180148931 36.0 36.0 36.0 32.0 36.0 45 33.6351120508831 36.0 36.0 36.0 27.0 36.0 46 33.73975870303941 36.0 36.0 36.0 27.0 36.0 47 33.64270812321295 36.0 36.0 36.0 27.0 36.0 48 33.628720629578275 36.0 36.0 36.0 27.0 36.0 49 33.681716811088435 36.0 36.0 36.0 27.0 36.0 50 33.081723017721345 36.0 36.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 5.0 21 18.0 22 75.0 23 214.0 24 694.0 25 1614.0 26 3577.0 27 6565.0 28 10911.0 29 15855.0 30 21485.0 31 29508.0 32 42993.0 33 59453.0 34 122606.0 35 393346.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.88207750140023 17.6695404852902 11.770241234288875 25.6781407790207 2 14.688473344468017 21.335992867783144 37.53568929716066 26.439844490588182 3 18.748933228948463 25.81987967527842 28.559700387211446 26.871486708561676 4 11.95499614200252 16.272003633711705 36.08941526299976 35.683584961286016 5 13.289106371813988 37.70966781818515 34.09571474315119 14.90551106684967 6 33.79516389765812 35.23482264521426 17.450255177608696 13.519758279518928 7 28.779310471295027 31.081124924004012 21.816737878375385 18.322826726325577 8 28.094182833299712 33.42568050792827 20.59459543332877 17.885541225443248 9 27.144850116868074 14.399952603894098 18.650226612631343 39.80497066660648 10 15.35140121791065 27.56224618045221 32.589336722531066 24.497015879106076 11 36.96670564620217 21.266886625975605 21.899963183382024 19.8664445444402 12 23.38080937314418 24.30982947276064 30.151258465353585 22.15810268874159 13 30.530991551926245 20.00679908423953 25.395849173177755 24.06636019065648 14 23.475178405431368 19.765586759559273 25.498963915482587 31.26027091952677 15 25.20513627085746 27.30170865782974 24.207843209167763 23.285311862145043 16 25.499669214677557 25.739894120484852 25.664144986944915 23.09629167789268 17 23.28037476778024 26.192978323334543 27.348117344858863 23.178529564026356 18 24.86066814403338 24.14126296516245 28.96198296279265 22.036085928011524 19 24.48361519440162 27.135399107655463 25.69461391216768 22.686371785775243 20 24.269627418647264 24.027427675094053 28.393652871484615 23.30929203477407 21 25.294145029262864 25.6421396520618 24.215319380634458 24.848395938040877 22 23.81795381418752 26.340385855083586 25.77854451636929 24.06311581435961 23 22.570279538282936 25.65229596046939 25.982093864038063 25.795330637209613 24 23.16188450302503 26.785570706949596 25.957267332375068 24.09527745765031 25 24.783085232586515 24.892688727485087 25.190889227119033 25.13333681280936 26 22.68594860625826 25.74469015501066 26.630404884055864 24.938956354675216 27 24.851922434015734 26.21089292288682 26.035696602855896 22.901488040241553 28 23.44837703602245 24.723981160047902 26.440397280930544 25.387244522999104 29 22.875815149544586 26.098609291047353 27.274625168742833 23.750950390665224 30 24.582639201375617 25.094545357085927 26.919436494155185 23.403378947383267 31 23.199829599714494 25.74045835984083 25.978708427902202 25.081003612542474 32 23.098830754994577 26.290168552401617 26.242490326821542 24.368510365782267 33 22.73348577199934 25.513069899382018 26.767232927880336 24.986211400738306 34 22.885407218596203 26.344476590414416 27.732928585635314 23.037187605354067 35 24.94530404742996 25.694896031845673 26.499924532986135 22.85987538773823 36 23.4520445918363 26.63618833745463 26.379177310807016 23.53258975990205 37 24.80720646505454 26.0702562634095 26.31302024631869 22.809517025217268 38 23.675624436642266 26.205814768683023 25.44550223650375 24.67305855817096 39 23.854629372326034 25.487820188202036 26.50683646509686 24.150713974375073 40 25.204007792145504 25.559337526572147 25.609413769415124 23.627240911867222 41 22.847462121906734 25.789406123971848 27.165162733683257 24.19796902043816 42 25.43788500519806 26.391026337282536 26.29129703111357 21.879791626405837 43 24.00937201570278 24.79140776308718 25.963897144807802 25.23532307640224 44 23.39547959639959 25.627751548484383 27.28379405827746 23.692974796838566 45 24.207702149328767 26.003817079243184 25.912833483091863 23.875647288336186 46 23.168579678580144 25.298166075859374 27.1913355160054 24.341918729555083 47 24.406455462471737 24.7809693350016 27.581853498072416 23.230721704454247 48 23.70679866106001 27.941415027668885 24.86560523839818 23.486181072872924 49 22.838011112694115 25.689958937480867 27.74435443259385 23.727675517231166 50 22.730869763315027 28.14363317567501 24.422040944144378 24.703456116865585 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9.0 1 12.5 2 16.0 3 87.5 4 159.0 5 171.0 6 183.0 7 167.0 8 151.0 9 223.0 10 295.0 11 425.0 12 555.0 13 960.0 14 1365.0 15 1827.0 16 2289.0 17 2661.5 18 3034.0 19 3332.0 20 3630.0 21 4126.0 22 4622.0 23 5014.0 24 5406.0 25 5639.0 26 5872.0 27 7177.0 28 8482.0 29 9884.0 30 11286.0 31 12698.0 32 14110.0 33 16858.5 34 19607.0 35 22545.5 36 25484.0 37 28460.0 38 31436.0 39 32713.0 40 33990.0 41 36221.0 42 38452.0 43 39722.5 44 40993.0 45 47825.5 46 54658.0 47 59672.0 48 64686.0 49 61828.0 50 58970.0 51 52544.5 52 46119.0 53 42857.0 54 39595.0 55 40140.0 56 40685.0 57 39209.0 58 37733.0 59 34463.5 60 31194.0 61 27243.5 62 23293.0 63 20097.0 64 16901.0 65 14636.5 66 12372.0 67 10989.0 68 9606.0 69 8897.5 70 8189.0 71 6289.5 72 4390.0 73 4082.0 74 3774.0 75 2690.0 76 1606.0 77 1475.0 78 1344.0 79 1128.0 80 912.0 81 751.5 82 591.0 83 504.0 84 417.0 85 348.0 86 279.0 87 195.5 88 112.0 89 76.5 90 41.0 91 25.5 92 10.0 93 8.0 94 6.0 95 5.0 96 4.0 97 3.5 98 3.0 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014952342933395774 2 0.0032443762968688947 3 5.64239355977199E-4 4 2.821196779885995E-4 5 0.0 6 1.4105983899429975E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.821196779885995E-4 47 0.0 48 0.0 49 0.0 50 2.821196779885995E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 708919.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.663848473020344 #Duplication Level Percentage of deduplicated Percentage of total 1 81.34579642401192 48.53403271759407 2 12.063481497941138 14.395074643004888 3 3.1544122428534536 5.646131222371461 4 1.218208291678175 2.907319796930543 5 0.588169607792226 1.7546231177875589 6 0.32067126761619047 1.1479489152422244 7 0.23196199023862585 0.9687821525968315 8 0.14501920782188485 0.6921923232929906 9 0.10925805083194841 0.5866880210365432 >10 0.6516419612443581 7.474831174496679 >50 0.08889876278011218 3.7336746649883588 >100 0.07653828199206286 8.798302504171634 >500 0.004991627086303625 2.005602830673513 >1k 9.507861116768811E-4 1.3547959158127612 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 3554 0.5013266677857414 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 3231 0.45576433979058256 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 1450 0.2045367665417347 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 1318 0.1859168677944871 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 856 0.12074722217912061 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 840 0.11849026475521181 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 836 0.11792602539923462 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 833 0.11750284588225171 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 747 0.10537169972874193 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 743 0.10480746037276473 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 737 0.10396110133879892 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 4.2317951698289934E-4 1.4105983899429978E-4 11 0.0 0.0 0.0 4.2317951698289934E-4 1.4105983899429978E-4 12 0.0 0.0 0.0 4.2317951698289934E-4 7.052991949714989E-4 13 0.0 0.0 0.0 4.2317951698289934E-4 7.052991949714989E-4 14 0.0 0.0 0.0 4.2317951698289934E-4 7.052991949714989E-4 15 0.0 0.0 0.0 7.052991949714989E-4 7.052991949714989E-4 16 0.0 0.0 0.0 7.052991949714989E-4 7.052991949714989E-4 17 0.0 0.0 0.0 0.0011284787119543982 7.052991949714989E-4 18 0.0 0.0 0.0 0.0011284787119543982 8.463590339657987E-4 19 0.0 0.0 0.0 0.0014105983899429977 8.463590339657987E-4 20 0.0 0.0 0.0 0.0021158975849144964 8.463590339657987E-4 21 0.0 0.0 0.0 0.002398017262903096 8.463590339657987E-4 22 0.0 0.0 0.0 0.0033854361358631947 8.463590339657987E-4 23 0.0 0.0 0.0 0.00620663291574919 8.463590339657987E-4 24 0.0 0.0 0.0 0.010579487924572483 8.463590339657987E-4 25 0.0 0.0 0.0 0.01213114615350978 8.463590339657987E-4 26 0.0 0.0 0.0 0.015375522450378674 0.0011284787119543982 27 0.0 0.0 0.0 0.021158975849144966 0.0011284787119543982 28 0.0 0.0 0.0 0.030186805544780152 0.0011284787119543982 29 0.0 0.0 0.0 0.04260007137627853 0.0011284787119543982 30 0.0 0.0 0.0 0.0641822267424064 0.0011284787119543982 31 0.0 0.0 0.0 0.10551275956773623 0.0011284787119543982 32 0.0 0.0 0.0 0.15728172047864425 0.0011284787119543982 33 0.0 0.0 0.0 0.20608842477067196 0.0011284787119543982 34 0.0 0.0 0.0 0.27492562619989025 0.0011284787119543982 35 0.0 0.0 0.0 0.34263434891715416 0.0011284787119543982 36 0.0 0.0 0.0 0.4488524076798619 0.0011284787119543982 37 0.0 0.0 0.0 0.5955546402339337 0.0011284787119543982 38 0.0 0.0 0.0 0.7612999510522359 0.0011284787119543982 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGATTA 40 1.8190762E-5 32.999844 40 CGATTAA 60 2.9425973E-7 29.33319 41 AACGATT 50 8.336923E-5 26.399874 39 GGTTCGT 50 8.336923E-5 26.399874 26 TCGTATA 60 9.745916E-6 25.666542 44 GCGCACT 55 1.592764E-4 23.999884 32 TGGTTCG 65 1.812087E-5 23.692194 25 TGTAGGA 580 0.0 23.518787 2 CTACGCA 50 0.0025794664 21.999895 4 GTCGTAT 90 4.0770647E-7 21.999895 43 GTAAGAC 80 3.6122037E-6 21.999895 3 CTGTAGG 555 0.0 21.804773 1 GTAGGAC 600 0.0 21.266563 3 GGCGTTA 135 1.1277734E-10 21.185083 42 GCGGCGT 135 1.1277734E-10 21.185083 40 TAGGACG 365 0.0 21.095789 4 ATAACGC 225 0.0 20.533234 3 TTAACGG 65 4.9295573E-4 20.307594 35 GATTTCG 220 0.0 19.999903 41 CGCAATA 200 0.0 19.799906 36 >>END_MODULE