##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062590_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1119734 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.242862144044924 32.0 32.0 32.0 32.0 32.0 2 31.3958100763217 32.0 32.0 32.0 32.0 32.0 3 31.484325741649357 32.0 32.0 32.0 32.0 32.0 4 31.59142617800299 32.0 32.0 32.0 32.0 32.0 5 31.525211344837256 32.0 32.0 32.0 32.0 32.0 6 35.10689324428837 36.0 36.0 36.0 36.0 36.0 7 35.119727542434184 36.0 36.0 36.0 36.0 36.0 8 35.06358206502616 36.0 36.0 36.0 36.0 36.0 9 35.190728333693535 36.0 36.0 36.0 36.0 36.0 10 35.05900776434403 36.0 36.0 36.0 36.0 36.0 11 35.20223821014634 36.0 36.0 36.0 36.0 36.0 12 35.09860466860879 36.0 36.0 36.0 36.0 36.0 13 35.145717643654656 36.0 36.0 36.0 36.0 36.0 14 35.108533812494755 36.0 36.0 36.0 36.0 36.0 15 35.0700246665726 36.0 36.0 36.0 36.0 36.0 16 35.084957677448394 36.0 36.0 36.0 36.0 36.0 17 35.05593739227352 36.0 36.0 36.0 36.0 36.0 18 35.06981390223035 36.0 36.0 36.0 36.0 36.0 19 35.0484552581238 36.0 36.0 36.0 36.0 36.0 20 35.0349207936885 36.0 36.0 36.0 36.0 36.0 21 35.025096138904416 36.0 36.0 36.0 36.0 36.0 22 35.004329599708505 36.0 36.0 36.0 36.0 36.0 23 34.974291215592274 36.0 36.0 36.0 32.0 36.0 24 34.94724104117585 36.0 36.0 36.0 32.0 36.0 25 34.92485804664322 36.0 36.0 36.0 32.0 36.0 26 34.88406442958774 36.0 36.0 36.0 32.0 36.0 27 34.86556092786322 36.0 36.0 36.0 32.0 36.0 28 34.84310023630612 36.0 36.0 36.0 32.0 36.0 29 34.81761382614085 36.0 36.0 36.0 32.0 36.0 30 34.80340241521647 36.0 36.0 36.0 32.0 36.0 31 34.793597407955815 36.0 36.0 36.0 32.0 36.0 32 34.75903384196604 36.0 36.0 36.0 32.0 36.0 33 34.735413053457336 36.0 36.0 36.0 32.0 36.0 34 34.71654696561862 36.0 36.0 36.0 32.0 36.0 35 34.676257932687584 36.0 36.0 36.0 32.0 36.0 36 34.64223110131513 36.0 36.0 36.0 32.0 36.0 37 34.619781126589 36.0 36.0 36.0 32.0 36.0 38 34.57934295109374 36.0 36.0 36.0 32.0 36.0 39 34.561477993880686 36.0 36.0 36.0 32.0 36.0 40 34.53668371238169 36.0 36.0 36.0 32.0 36.0 41 34.505121752130414 36.0 36.0 36.0 32.0 36.0 42 34.46186326395376 36.0 36.0 36.0 32.0 36.0 43 34.46397805193019 36.0 36.0 36.0 32.0 36.0 44 34.419389783645045 36.0 36.0 36.0 32.0 36.0 45 34.361122373706614 36.0 36.0 36.0 32.0 36.0 46 34.36532158530508 36.0 36.0 36.0 32.0 36.0 47 34.3321699617945 36.0 36.0 36.0 32.0 36.0 48 34.27628704674503 36.0 36.0 36.0 32.0 36.0 49 34.27714528629121 36.0 36.0 36.0 32.0 36.0 50 33.743270276690716 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 9.0 21 31.0 22 102.0 23 308.0 24 849.0 25 1926.0 26 4057.0 27 7445.0 28 12346.0 29 19040.0 30 26673.0 31 37625.0 32 55794.0 33 88804.0 34 192350.0 35 672370.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.50624291592719 17.94899735527948 11.229745915688703 26.31501381310463 2 16.21753657061865 20.780524487734475 36.479342813992886 26.522596127653987 3 18.897530907197584 24.29958123571633 28.62708009034377 28.17580776674231 4 12.311149175741003 15.554154427885933 36.12200408490238 36.01269231147068 5 14.194442608690993 36.88920761538008 33.49974190298767 15.41660787294125 6 34.27537759170084 35.489779660774765 16.642077361644972 13.592765385879426 7 29.915051253244073 30.590122296902656 20.981590270546395 18.513236179306872 8 28.188837706098056 32.79019838640249 19.692980654333976 19.327983253165485 9 27.487510426583455 13.899729757245918 18.662646664297057 39.950113151873566 10 15.72864626777431 26.73233107148662 31.836757658515324 25.70226500222374 11 37.691719640557494 21.01213323878707 22.192234941512893 19.103912179142547 12 24.50394468686313 23.753587905699032 28.911152112912532 22.831315294525307 13 29.637663945186983 19.44488601757203 25.574377486081517 25.343072551159473 14 23.4382451546528 19.676726794042157 25.291542455618927 31.593485595686115 15 24.995400693378965 27.45312726058153 22.730130548862498 24.82134149717701 16 25.57018006062154 25.799609550125297 24.283267275978044 24.346943113275117 17 23.714114244990327 25.941339639592975 25.64135767959176 24.703188435824938 18 24.760255560695665 24.54502587221608 27.06124847508426 23.633470092003993 19 25.312350969069442 25.232242657631186 25.786481432197288 23.66892494110208 20 25.381921063395414 24.28907222608227 25.884629742420966 24.444376968101352 21 26.378586342827848 24.33122509453138 24.729712592454995 24.560475970185777 22 25.38576126115667 24.699705465762403 25.3960315574949 24.518501715586023 23 23.96658492106161 24.32291955053611 25.979116468732755 25.73137905966953 24 24.320151035871017 25.283683446247057 25.752812721592804 24.64335279628912 25 24.732481107120083 24.541007060605466 25.803806975585275 24.92270485668918 26 23.953546110058284 25.343072551159473 26.379390105149973 24.323991233632274 27 25.00808227668357 25.053092966722453 25.489803828409247 24.44902092818473 28 24.066162142080174 24.74730605661702 26.284188923440745 24.902342877862065 29 24.03999521314884 25.050413758982042 26.218191106101983 24.691399921767136 30 24.22182411179798 25.095960290569007 26.3710845611547 24.311131036478308 31 24.548240921504572 25.071490193206603 25.358076114505767 25.022192770783057 32 24.230308269642613 25.095960290569007 25.516953133512065 25.156778306276312 33 23.934434428176694 24.664965072061758 26.15112160566706 25.24947889409449 34 24.576283295854193 25.05675455063435 26.267399221600847 24.099562931910615 35 25.407820071552706 24.757397739105894 25.931069343254737 23.903712846086663 36 24.014274818840903 25.444257296822283 25.792643610000233 24.748824274336584 37 25.19759157085522 25.099979102179624 25.518649965080993 24.183779361884163 38 24.275229652756817 24.81964466560808 25.911421819825065 24.993703861810037 39 24.673181309132346 24.80580209228263 25.55964184350926 24.96137475507576 40 25.088369201971183 24.91332762959774 26.00581923921217 23.992483929218906 41 23.808868892076156 25.072472569378085 26.679104144377146 24.439554394168614 42 25.251711567211498 25.48533848217523 25.79067885765727 23.472271092956007 43 24.238613813637883 24.505552211507375 26.084677253704896 25.171156721149845 44 23.879867897197013 25.15981474171544 25.91231488907187 25.048002472015675 45 23.93050492349076 25.37450858864695 25.818364004308165 24.87662248355413 46 23.77526388034269 24.983768422951584 26.027590555231566 25.213377141474158 47 24.3417850505433 24.5788951473253 26.408795668253056 24.670524133878345 48 24.755165065988887 25.792554303075555 25.129896921947537 24.322383708988028 49 23.74396396283757 25.445351704379526 25.840177970998447 24.970506361784462 50 23.60089414172843 26.174096860590872 25.268255914579633 24.95675308310106 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 41.0 1 56.5 2 72.0 3 216.5 4 361.0 5 392.0 6 423.0 7 366.5 8 310.0 9 389.0 10 468.0 11 739.5 12 1011.0 13 1581.0 14 2151.0 15 2940.5 16 3730.0 17 4070.5 18 4411.0 19 4658.5 20 4906.0 21 5458.0 22 6010.0 23 6449.5 24 6889.0 25 7803.5 26 8718.0 27 10691.0 28 12664.0 29 14309.0 30 15954.0 31 17806.5 32 19659.0 33 22988.0 34 26317.0 35 29963.5 36 33610.0 37 39172.0 38 44734.0 39 47355.0 40 49976.0 41 54224.0 42 58472.0 43 59359.5 44 60247.0 45 66984.0 46 73721.0 47 78525.5 48 83330.0 49 84284.0 50 85238.0 51 80838.0 52 76438.0 53 74560.0 54 72682.0 55 73613.5 56 74545.0 57 72708.0 58 70871.0 59 64590.5 60 58310.0 61 51587.0 62 44864.0 63 39321.5 64 33779.0 65 29056.0 66 24333.0 67 21314.5 68 18296.0 69 16878.5 70 15461.0 71 12184.5 72 8908.0 73 8006.5 74 7105.0 75 5236.5 76 3368.0 77 2970.5 78 2573.0 79 2211.5 80 1850.0 81 1546.5 82 1243.0 83 1033.0 84 823.0 85 669.5 86 516.0 87 378.0 88 240.0 89 154.5 90 69.0 91 43.5 92 18.0 93 14.0 94 10.0 95 7.5 96 5.0 97 4.0 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01294950407864725 2 0.004554653158696619 3 9.823761714835846E-4 4 8.930692468032585E-5 5 0.0 6 5.358415480819552E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.679207740409776E-4 47 8.930692468032585E-5 48 0.0 49 8.930692468032585E-5 50 8.930692468032585E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1119734.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.412315528085 #Duplication Level Percentage of deduplicated Percentage of total 1 81.02602786045577 47.32917905372349 2 12.089973950464321 14.124067462417006 3 3.1836662296492997 5.57895949027151 4 1.1914579418186488 2.7838326894381464 5 0.6515569238658026 1.9029474310678858 6 0.3747419191167529 1.3133725932628728 7 0.25265189428648316 1.0330587517481302 8 0.18218017316450663 0.8513252606277062 9 0.1360336251231281 0.7151435129809252 >10 0.7486857374030378 8.14892670968875 >50 0.07645140377995005 3.2016018363396035 >100 0.07826877889629971 9.327133504254558 >500 0.007073404646189541 2.825121752660337 >1k 0.0012301573297720941 0.865329951519082 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1433 0.12797682306690697 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1280 0.11431286359081712 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1245 0.11118712122700569 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1228 0.10966890350744016 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1154 0.10306019108109604 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1148 0.10252434953301409 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.930692468032587E-5 2 0.0 0.0 0.0 0.0 8.930692468032587E-5 3 0.0 0.0 0.0 0.0 8.930692468032587E-5 4 0.0 0.0 0.0 0.0 8.930692468032587E-5 5 0.0 0.0 0.0 0.0 8.930692468032587E-5 6 0.0 0.0 0.0 0.0 1.7861384936065174E-4 7 0.0 0.0 0.0 0.0 1.7861384936065174E-4 8 0.0 0.0 0.0 0.0 1.7861384936065174E-4 9 0.0 0.0 0.0 0.0 1.7861384936065174E-4 10 0.0 0.0 0.0 0.0 1.7861384936065174E-4 11 0.0 0.0 0.0 8.930692468032587E-5 1.7861384936065174E-4 12 0.0 0.0 0.0 8.930692468032587E-5 6.25148472762281E-4 13 0.0 0.0 0.0 8.930692468032587E-5 7.144553974426069E-4 14 0.0 0.0 0.0 8.930692468032587E-5 7.144553974426069E-4 15 0.0 0.0 0.0 8.930692468032587E-5 7.144553974426069E-4 16 0.0 0.0 0.0 3.5722769872130347E-4 8.930692468032586E-4 17 0.0 0.0 0.0 5.358415480819552E-4 8.930692468032586E-4 18 0.0 0.0 0.0 5.358415480819552E-4 0.0010716830961639103 19 0.0 0.0 0.0 8.037623221229328E-4 0.0010716830961639103 20 0.0 0.0 0.0 8.930692468032586E-4 0.001250296945524562 21 0.0 0.0 0.0 0.0010716830961639103 0.001250296945524562 22 0.0 0.0 0.0 0.0021433661923278206 0.001250296945524562 23 0.0 0.0 0.0 0.0031257423638114054 0.001339603870204888 24 0.0 0.0 0.0 0.005358415480819552 0.001339603870204888 25 0.0 0.0 0.0 0.007591088597827698 0.001339603870204888 26 0.0 0.0 0.0 0.0103596032629178 0.0014289107948852139 27 0.0 0.0 0.0 0.013842573325450509 0.0014289107948852139 28 0.0 0.0 0.0 0.022594651944122444 0.0014289107948852139 29 0.0 0.0 0.0 0.037508908365736865 0.0014289107948852139 30 0.0 0.0 0.0 0.06742672813364603 0.0014289107948852139 31 0.0 0.0 0.0 0.12976296156051348 0.0015182177195655396 32 0.0 0.0 0.0 0.20210157055157743 0.0015182177195655396 33 0.0 0.0 0.0 0.2714037441035103 0.0015182177195655396 34 0.0 0.0 0.0 0.3516013624664429 0.0017861384936065173 35 0.0 0.0 0.0 0.44224789101697365 0.0017861384936065173 36 0.0 0.0 0.0 0.5735290702970527 0.0017861384936065173 37 0.0 0.0 0.0 0.7638421267908271 0.0017861384936065173 38 0.0 0.0 0.0 1.0005054771936905 0.0018754454182868432 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCGTA 45 0.0013981985 24.444296 7 TAGGACG 320 0.0 21.999866 4 ACCGTAT 55 0.0044835676 19.999878 8 TGTAGGA 425 0.0 19.671347 2 GTAGGAC 460 0.0 19.130318 3 CGTCTTA 150 4.656613E-10 19.066551 15 GGACGTG 380 0.0 18.526203 6 GTATAGG 155 7.185008E-10 18.455624 1 GGACCGT 85 1.4307804E-4 18.117537 6 GTACCGT 75 0.0012908424 17.599894 6 CGGATTT 100 2.4828782E-5 17.599894 35 GATTGCG 75 0.0012908424 17.599894 10 AGGACGT 390 0.0 17.487072 5 TACGCTC 90 2.2152899E-4 17.111008 34 TAGTACA 80 0.0019877148 16.500637 2 ACGTATG 80 0.0019883083 16.499899 32 TCCTACA 425 0.0 16.047678 2 GTACTAA 110 5.6102188E-5 16.003475 1 GTATTAT 125 9.419511E-6 15.843441 1 GTATGGT 280 0.0 15.7141905 3 >>END_MODULE