##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062578_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1868405 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.309779196694507 32.0 32.0 32.0 32.0 32.0 2 31.436094957998936 32.0 32.0 32.0 32.0 32.0 3 31.512190344170563 32.0 32.0 32.0 32.0 32.0 4 31.61050575223252 32.0 32.0 32.0 32.0 32.0 5 31.55124504590814 32.0 32.0 32.0 32.0 32.0 6 35.1431343846757 36.0 36.0 36.0 36.0 36.0 7 35.15207677136381 36.0 36.0 36.0 36.0 36.0 8 35.10016243801531 36.0 36.0 36.0 36.0 36.0 9 35.224276856463135 36.0 36.0 36.0 36.0 36.0 10 35.09824529478352 36.0 36.0 36.0 36.0 36.0 11 35.231140999943804 36.0 36.0 36.0 36.0 36.0 12 35.14413470312914 36.0 36.0 36.0 36.0 36.0 13 35.18394191837423 36.0 36.0 36.0 36.0 36.0 14 35.141528737077884 36.0 36.0 36.0 36.0 36.0 15 35.103915906883145 36.0 36.0 36.0 36.0 36.0 16 35.118725865109546 36.0 36.0 36.0 36.0 36.0 17 35.0876421332634 36.0 36.0 36.0 36.0 36.0 18 35.108715722768885 36.0 36.0 36.0 36.0 36.0 19 35.088410703246886 36.0 36.0 36.0 36.0 36.0 20 35.079533077678555 36.0 36.0 36.0 36.0 36.0 21 35.082338679247805 36.0 36.0 36.0 36.0 36.0 22 35.059117803688174 36.0 36.0 36.0 36.0 36.0 23 35.02582255988396 36.0 36.0 36.0 36.0 36.0 24 34.998870159307 36.0 36.0 36.0 36.0 36.0 25 34.971776996957296 36.0 36.0 36.0 32.0 36.0 26 34.93118462003687 36.0 36.0 36.0 32.0 36.0 27 34.92076236147945 36.0 36.0 36.0 32.0 36.0 28 34.899754603525466 36.0 36.0 36.0 32.0 36.0 29 34.878835691405236 36.0 36.0 36.0 32.0 36.0 30 34.86135286514433 36.0 36.0 36.0 32.0 36.0 31 34.86522194063921 36.0 36.0 36.0 32.0 36.0 32 34.83050409306333 36.0 36.0 36.0 32.0 36.0 33 34.809211065052814 36.0 36.0 36.0 32.0 36.0 34 34.79620424907876 36.0 36.0 36.0 32.0 36.0 35 34.7701365603282 36.0 36.0 36.0 32.0 36.0 36 34.743805545371586 36.0 36.0 36.0 32.0 36.0 37 34.73551826290338 36.0 36.0 36.0 32.0 36.0 38 34.70655826761328 36.0 36.0 36.0 32.0 36.0 39 34.70142019530027 36.0 36.0 36.0 32.0 36.0 40 34.693602832362366 36.0 36.0 36.0 32.0 36.0 41 34.647757846933615 36.0 36.0 36.0 32.0 36.0 42 34.628340215317344 36.0 36.0 36.0 32.0 36.0 43 34.62069198059307 36.0 36.0 36.0 32.0 36.0 44 34.58980841948079 36.0 36.0 36.0 32.0 36.0 45 34.55388794185415 36.0 36.0 36.0 32.0 36.0 46 34.549766244470554 36.0 36.0 36.0 32.0 36.0 47 34.52400095268424 36.0 36.0 36.0 32.0 36.0 48 34.48914983635775 36.0 36.0 36.0 32.0 36.0 49 34.47370457689848 36.0 36.0 36.0 32.0 36.0 50 33.95890237930213 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 4.0 20 14.0 21 57.0 22 175.0 23 472.0 24 1223.0 25 2867.0 26 5796.0 27 10715.0 28 18331.0 29 27723.0 30 40507.0 31 57447.0 32 85473.0 33 141337.0 34 315256.0 35 1161005.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.67276301125092 18.078982331913362 11.621346448878388 26.626908207957328 2 16.738977077974283 20.39137541788567 36.20525023898297 26.664397265157085 3 18.71765942551793 23.718954654152547 28.447770172918375 29.115615747411148 4 12.675872404196104 15.439895097409547 35.600888460715055 36.2833440376793 5 14.707946082353665 36.328151551724595 33.18857528212567 15.775327083796073 6 34.68001430103683 35.14265712407862 16.380681611392873 13.79664696349168 7 30.595968856825856 30.224314561687173 20.523677172430144 18.656039409056827 8 28.434214441844485 32.428372022324936 19.406991207469048 19.730422328361534 9 27.69570837157897 14.044010800656176 18.55459603244479 39.705684795320074 10 16.235505685330537 26.220332315531163 31.06965566887265 26.47450633026566 11 37.92346948332936 21.03462579044693 21.873094966027175 19.16880976019653 12 24.83406970116222 23.71193611663424 28.13137408645342 23.322620095750118 13 29.600595160042925 19.00096606463802 25.20213765216856 26.196301123150494 14 23.62480297365935 19.570114616477692 24.630741193691946 32.17434121617101 15 25.385770215772276 27.096962382352864 21.922227782520384 25.595039619354477 16 26.249822709744407 25.569723908895554 23.45439024194433 24.726063139415704 17 24.41537032923804 25.629132870014796 24.9960260221954 24.959470778551758 18 25.344183942988806 24.403006842734847 26.086635392219566 24.16617382205678 19 25.88154067239169 24.714020782432076 25.18993473042515 24.214503814751083 20 25.96647943031623 23.968625645938648 24.930301513858076 25.13459340988704 21 27.090111619268843 23.943845151345666 24.16660199474953 24.79944123463596 22 26.125973758366094 24.24436886007049 24.72766878701352 24.9019885945499 23 24.43463810041185 23.96605660978214 25.500199367910064 26.099105921895948 24 24.886788463957227 24.763153598925285 25.128224341082365 25.221833596035122 25 24.902791418348805 24.264439455043206 25.32149079027299 25.511278336335003 26 24.605211396886652 25.16868666054737 25.628918783668425 24.59718315889756 27 25.67104027231783 24.50865845467123 24.734144898991385 25.086156374019552 28 24.56378568886296 24.581661898785327 25.656696487110665 25.197855925241047 29 24.633470794608236 24.81025259512793 25.37624337335856 25.180033236905274 30 24.572028013198423 24.89631530637094 25.662048645770053 24.86960803466058 31 25.234357647298093 24.6663330487769 24.59177747865158 25.50753182527343 32 25.043820799023763 24.651935741983134 24.70754467045421 25.596698788538884 33 24.649045576307063 24.118700174747982 25.367786962676718 25.864467286268233 34 25.230129441957178 24.490835766335454 25.499075414591587 24.779959377115777 35 25.945713054717796 24.28622274078693 25.26299169612584 24.505072508369437 36 24.501486562067644 24.90803653383501 25.205509512123975 25.38496739197337 37 25.76149175366155 24.693522014766607 24.683138826967387 24.86184740460446 38 24.680355704464503 24.3603501382195 25.475525916490266 25.483768240825732 39 25.31265972848499 24.30559755513392 24.720336329650156 25.661406386730928 40 25.565067530861885 24.422542221841624 25.44426930991942 24.568120937377067 41 24.423238002467347 24.89508430987928 25.78734267998641 24.894335007666967 42 25.831016294647043 24.901667465030332 25.1973742309617 24.069942009360926 43 24.97162017870858 23.843599219655268 25.583639521409975 25.60114108022618 44 24.478525801418858 24.520540246895077 25.217177218001453 25.783756733684616 45 24.49843583163179 24.87629823298482 25.327110556865346 25.29815537851804 46 24.351866272961452 24.353204314058583 25.4296316158773 25.86529779710266 47 24.648885011547282 24.201123418102608 25.86098838313963 25.28900318721048 48 25.33176693489902 24.983180841412864 24.86398826806822 24.821063955619902 49 24.297462273971647 24.96096938297639 25.35997281103401 25.381595532017954 50 24.111273578947596 25.36582024016219 25.114108083690677 25.408798097199536 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 48.0 1 55.0 2 62.0 3 167.0 4 272.0 5 315.5 6 359.0 7 333.5 8 308.0 9 421.0 10 534.0 11 769.0 12 1004.0 13 1740.0 14 2476.0 15 3310.0 16 4144.0 17 4691.0 18 5238.0 19 5623.0 20 6008.0 21 6928.5 22 7849.0 23 8636.5 24 9424.0 25 11168.5 26 12913.0 27 15890.0 28 18867.0 29 21842.5 30 24818.0 31 27516.0 32 30214.0 33 34974.5 34 39735.0 35 45660.0 36 51585.0 37 61138.5 38 70692.0 39 76230.5 40 81769.0 41 88286.5 42 94804.0 43 97067.0 44 99330.0 45 108855.0 46 118380.0 47 125741.0 48 133102.0 49 136448.0 50 139794.0 51 133260.0 52 126726.0 53 123990.0 54 121254.0 55 123521.0 56 125788.0 57 123877.5 58 121967.0 59 112499.0 60 103031.0 61 91007.0 62 78983.0 63 70929.5 64 62876.0 65 53960.5 66 45045.0 67 41652.5 68 38260.0 69 35933.5 70 33607.0 71 26367.0 72 19127.0 73 17067.0 74 15007.0 75 11109.0 76 7211.0 77 6440.0 78 5669.0 79 4905.0 80 4141.0 81 3198.0 82 2255.0 83 2019.0 84 1783.0 85 1482.0 86 1181.0 87 849.5 88 518.0 89 345.5 90 173.0 91 108.0 92 43.0 93 28.0 94 13.0 95 10.0 96 7.0 97 7.0 98 7.0 99 5.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01557478169882868 2 0.003800032648167822 3 4.816942793452169E-4 4 2.6760793296956494E-4 5 0.0 6 4.816942793452169E-4 7 1.0704317318782599E-4 8 5.3521586593912995E-5 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.0704317318782599E-4 47 0.0 48 0.0 49 0.0 50 5.3521586593912995E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1868405.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.87853690494667 #Duplication Level Percentage of deduplicated Percentage of total 1 80.58834412958356 43.41982073294311 2 12.057586787818295 12.992902694641309 3 3.2535445289535483 5.258886569253333 4 1.301292972668045 2.8044704580817212 5 0.6823488164776257 1.838197794531822 6 0.3959140684608815 1.2798762449254315 7 0.29137640469636983 1.0989254061564826 8 0.20050570749998034 0.8642363328952107 9 0.15736269964403996 0.7630624818210102 >10 0.8751486146671632 8.641427858165498 >50 0.09250008818676209 3.530298046590661 >100 0.08829494292506616 10.05273733070754 >500 0.011785241350619143 4.315169868779846 >1k 0.0039949970680064895 3.1399881805070593 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2354 0.1259898148420712 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2330 0.12470529676381727 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2165 0.11587423497582162 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2149 0.11501788959031901 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1999 0.10698965160123207 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1968 0.10533048241682076 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1917 0.1026008815005312 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.0704317318782598E-4 0.0 5 0.0 0.0 0.0 1.0704317318782598E-4 0.0 6 0.0 0.0 0.0 1.0704317318782598E-4 0.0 7 0.0 0.0 0.0 1.0704317318782598E-4 0.0 8 0.0 0.0 0.0 1.0704317318782598E-4 0.0 9 0.0 0.0 0.0 1.0704317318782598E-4 5.352158659391299E-5 10 0.0 0.0 0.0 1.0704317318782598E-4 5.352158659391299E-5 11 0.0 0.0 0.0 1.0704317318782598E-4 5.352158659391299E-5 12 0.0 0.0 0.0 1.0704317318782598E-4 5.352158659391299E-5 13 0.0 0.0 0.0 1.0704317318782598E-4 5.352158659391299E-5 14 0.0 0.0 0.0 1.0704317318782598E-4 1.0704317318782598E-4 15 0.0 0.0 0.0 1.6056475978173896E-4 1.6056475978173896E-4 16 0.0 0.0 0.0 1.6056475978173896E-4 1.6056475978173896E-4 17 0.0 0.0 0.0 2.1408634637565195E-4 1.6056475978173896E-4 18 0.0 0.0 0.0 3.2112951956347793E-4 2.1408634637565195E-4 19 0.0 0.0 0.0 3.746511061573909E-4 2.1408634637565195E-4 20 0.0 0.0 0.0 5.887374525330429E-4 2.6760793296956494E-4 21 0.0 0.0 0.0 5.887374525330429E-4 3.2112951956347793E-4 22 0.0 0.0 0.0 9.633885586904338E-4 3.2112951956347793E-4 23 0.0 0.0 0.0 0.0016591691844113027 3.2112951956347793E-4 24 0.0 0.0 0.0 0.0027296009162895624 3.2112951956347793E-4 25 0.0 0.0 0.0 0.0033183383688226054 3.2112951956347793E-4 26 0.0 0.0 0.0 0.004174683754325214 5.352158659391299E-4 27 0.0 0.0 0.0 0.006315547218081733 5.887374525330429E-4 28 0.0 0.0 0.0 0.014290263620574768 5.887374525330429E-4 29 0.0 0.0 0.0 0.028419962481367796 5.887374525330429E-4 30 0.0 0.0 0.0 0.05951600429243124 5.887374525330429E-4 31 0.0 0.0 0.0 0.12117287204861901 5.887374525330429E-4 32 0.0 0.0 0.0 0.19712000342538155 5.887374525330429E-4 33 0.0 0.0 0.0 0.2715685303775145 5.887374525330429E-4 34 0.0 0.0 0.0 0.3553298133969883 6.957806257208689E-4 35 0.0 0.0 0.0 0.44915315469611783 6.957806257208689E-4 36 0.0 0.0 0.0 0.5833317722870577 6.957806257208689E-4 37 0.0 0.0 0.0 0.7608093534324731 6.957806257208689E-4 38 0.0 0.0 0.0 1.0070621733510667 6.957806257208689E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTACG 50 0.0025809961 21.999947 9 GTATCAA 3750 0.0 18.59878 1 ACCGTCG 475 0.0 18.063114 8 AAACGCT 485 0.0 17.69068 29 TAGGACG 440 0.0 17.499958 4 ACGCTTC 505 0.0 17.4257 31 GTAAACG 495 0.0 17.333292 27 CGTCGTA 470 0.0 17.319107 10 TAGTACG 270 0.0 17.111528 2 TAAACGC 515 0.0 17.087337 28 CGCAATA 685 0.0 17.021856 36 TATACTG 325 0.0 16.923037 5 TTAGTAC 130 7.322251E-7 16.923035 3 ATACGAA 665 0.0 16.87214 40 ATACCGT 460 0.0 16.73909 6 CGCTTCG 530 0.0 16.603733 32 GTATTAG 520 0.0 16.501284 1 TGCGTAG 255 0.0 16.392117 13 TGCACCG 135 1.0862495E-6 16.296257 5 CCGTCGT 475 0.0 16.210485 9 >>END_MODULE