##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062574_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2191104 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.31491522082019 32.0 32.0 32.0 32.0 32.0 2 31.446861034437433 32.0 32.0 32.0 32.0 32.0 3 31.51795213737002 32.0 32.0 32.0 32.0 32.0 4 31.611651934367334 32.0 32.0 32.0 32.0 32.0 5 31.553857324891926 32.0 32.0 32.0 32.0 32.0 6 35.151385329039606 36.0 36.0 36.0 36.0 36.0 7 35.17354310886201 36.0 36.0 36.0 36.0 36.0 8 35.109709990945206 36.0 36.0 36.0 36.0 36.0 9 35.232960188106084 36.0 36.0 36.0 36.0 36.0 10 35.11016181796939 36.0 36.0 36.0 36.0 36.0 11 35.245642835757685 36.0 36.0 36.0 36.0 36.0 12 35.15138441625774 36.0 36.0 36.0 36.0 36.0 13 35.19425960611637 36.0 36.0 36.0 36.0 36.0 14 35.16108865667718 36.0 36.0 36.0 36.0 36.0 15 35.119393693772636 36.0 36.0 36.0 36.0 36.0 16 35.1367105349632 36.0 36.0 36.0 36.0 36.0 17 35.11169483511508 36.0 36.0 36.0 36.0 36.0 18 35.119756524564785 36.0 36.0 36.0 36.0 36.0 19 35.11242414782685 36.0 36.0 36.0 36.0 36.0 20 35.09498590664797 36.0 36.0 36.0 36.0 36.0 21 35.10198420522257 36.0 36.0 36.0 36.0 36.0 22 35.08248398980605 36.0 36.0 36.0 36.0 36.0 23 35.04307326352377 36.0 36.0 36.0 36.0 36.0 24 35.022201136961094 36.0 36.0 36.0 36.0 36.0 25 34.99182740755345 36.0 36.0 36.0 36.0 36.0 26 34.9571918996086 36.0 36.0 36.0 32.0 36.0 27 34.93819827812828 36.0 36.0 36.0 32.0 36.0 28 34.92722025061339 36.0 36.0 36.0 32.0 36.0 29 34.90672327739806 36.0 36.0 36.0 32.0 36.0 30 34.88919056329595 36.0 36.0 36.0 32.0 36.0 31 34.891029818758035 36.0 36.0 36.0 32.0 36.0 32 34.863812489046616 36.0 36.0 36.0 32.0 36.0 33 34.839197044047204 36.0 36.0 36.0 32.0 36.0 34 34.83374362878257 36.0 36.0 36.0 32.0 36.0 35 34.80474363608482 36.0 36.0 36.0 32.0 36.0 36 34.77780196649726 36.0 36.0 36.0 32.0 36.0 37 34.77178217008412 36.0 36.0 36.0 32.0 36.0 38 34.74042172347821 36.0 36.0 36.0 32.0 36.0 39 34.73280592797056 36.0 36.0 36.0 32.0 36.0 40 34.72215285080033 36.0 36.0 36.0 32.0 36.0 41 34.693553569342214 36.0 36.0 36.0 32.0 36.0 42 34.67773825432293 36.0 36.0 36.0 32.0 36.0 43 34.6659318772637 36.0 36.0 36.0 32.0 36.0 44 34.64217901112864 36.0 36.0 36.0 32.0 36.0 45 34.603254341190556 36.0 36.0 36.0 32.0 36.0 46 34.60175692253768 36.0 36.0 36.0 32.0 36.0 47 34.57476368077462 36.0 36.0 36.0 32.0 36.0 48 34.53829028654048 36.0 36.0 36.0 32.0 36.0 49 34.53450224179227 36.0 36.0 36.0 32.0 36.0 50 34.02784943115434 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 9.0 21 51.0 22 185.0 23 509.0 24 1251.0 25 3110.0 26 6397.0 27 12042.0 28 20398.0 29 31599.0 30 46161.0 31 66392.0 32 97960.0 33 162471.0 34 364109.0 35 1378453.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.90279973854013 17.91068552878067 11.388612984622801 26.797901748056397 2 16.701954854548617 20.28291100849974 36.066977421797375 26.948156715154266 3 18.66421796264966 23.6188729724142 28.55490712161202 29.16200194332412 4 12.782124404237324 15.43385305730138 35.59172816928856 36.19229436917273 5 14.616786788760368 36.34195364528566 33.4664625686412 15.57479699731277 6 34.874300120670426 35.06201473968231 16.352896181447424 13.710788958199839 7 30.432786394438605 30.299520241850686 20.690893722981656 18.576799640729057 8 28.365015991938307 32.77822504089263 19.342669266269425 19.514089700899635 9 27.55149915293843 14.033884288468279 18.451794164037853 39.96282239455544 10 15.949767788293027 26.572266765977332 31.59854575592943 25.87941968980021 11 37.78241470966234 20.942730240098143 22.032956902091367 19.24189814814815 12 24.601844549596915 23.582997429606262 28.54131980955719 23.27383821123963 13 29.619817224558943 19.1811525148966 25.203230882696577 25.995799377847877 14 23.511389692136934 19.353440092300502 24.86066384799626 32.2745063675663 15 25.281593205982006 27.06393671865872 22.087860731393853 25.566609343965418 16 26.020900879191494 25.59180212349574 23.569533897067416 24.817763100245354 17 24.342888333917514 25.648120764692138 25.0606999941582 24.948290907232153 18 25.121536905596447 24.674273790746582 26.03833501285197 24.165854290805 19 25.773719549596912 24.897631513611405 25.226187346652644 24.102461590139036 20 25.67769489718425 24.35521088912256 25.025284057717023 24.941810155976167 21 26.526536394438605 24.13185316625774 24.44347689566538 24.898133543638277 22 25.770479173968923 24.4652467431943 24.744421077228647 25.019853005608134 23 24.582265378548897 24.22687375861666 25.43585334151186 25.755007521322586 24 24.94600895256455 24.880060462670873 25.042444356817384 25.131486227947192 25 25.01889458464774 24.4337557687814 25.250010953382407 25.297338693188458 26 24.65953236359388 25.010725186937727 25.60951009171632 24.720232357752074 27 25.464925443977098 24.766601676597734 24.75076491120458 25.017707968220588 28 24.659349807220472 24.5508656823227 25.522750175254117 25.26703433520271 29 24.716900703937377 24.816850318378314 25.339098463605563 25.12715051407875 30 24.765734533824045 24.90790030961561 25.5065939362075 24.819771220352845 31 25.14093352027106 24.617635675896718 24.851262194765745 25.39016860906648 32 24.864999561864703 24.771667615959807 24.875313996962262 25.488018825213228 33 24.62648966000701 24.41390276317327 25.352333800677652 25.60727377614207 34 25.061065106905012 24.551687186003036 25.587740244187408 24.799507462904543 35 25.63465723215329 24.454795390816685 25.242206668419207 24.66834070861082 36 24.650267627643416 24.8198168594462 25.221167046383925 25.308748466526467 37 25.57048866690034 24.551093877789462 24.814066333683844 25.06435112162636 38 24.752088444911788 24.47227516357051 25.45095988141138 25.32467651010632 39 25.174843366631617 24.391311411964015 24.925745195116253 25.508100026288115 40 25.45524995618647 24.406919981890407 25.463464992989838 24.674365068933287 41 24.52339094812478 24.683584165790396 25.75564646862951 25.037378417455308 42 25.436720484285548 24.882844447365347 25.292409671106437 24.388025397242668 43 24.729040702769016 24.05937828601472 25.60951009171632 25.60207091949994 44 24.483639297815166 24.49974989776843 25.426177853721228 25.590432950695174 45 24.448907947774273 24.8614853516766 25.45319619698563 25.2364105035635 46 24.386803152208092 24.354171125996587 25.651191479709496 25.60783424208582 47 24.63894913249211 24.289992624722515 25.881153975347587 25.189904267437786 48 25.02560353137049 25.069462700081786 25.109168711298047 24.795765057249678 49 24.241341351209254 24.875861666082486 25.446167776609418 25.436629206098843 50 23.96474468098701 25.229815864345884 25.360343790476207 25.445095664190898 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 38.0 1 51.0 2 64.0 3 181.0 4 298.0 5 365.5 6 433.0 7 390.5 8 348.0 9 474.5 10 601.0 11 858.0 12 1115.0 13 1911.0 14 2707.0 15 3590.5 16 4474.0 17 5060.0 18 5646.0 19 6022.5 20 6399.0 21 7577.0 22 8755.0 23 9570.5 24 10386.0 25 12920.0 26 15454.0 27 19050.5 28 22647.0 29 26026.0 30 29405.0 31 31768.5 32 34132.0 33 39661.5 34 45191.0 35 52508.5 36 59826.0 37 70802.0 38 81778.0 39 88454.5 40 95131.0 41 103384.5 42 111638.0 43 115015.5 44 118393.0 45 129197.5 46 140002.0 47 147999.0 48 155996.0 49 160068.0 50 164140.0 51 159975.0 52 155810.0 53 153823.0 54 151836.0 55 152603.5 56 153371.0 57 150132.5 58 146894.0 59 135035.0 60 123176.0 61 108363.0 62 93550.0 63 82479.0 64 71408.0 65 60619.0 66 49830.0 67 44759.0 68 39688.0 69 36022.0 70 32356.0 71 25869.0 72 19382.0 73 17023.0 74 14664.0 75 11232.5 76 7801.0 77 6891.0 78 5981.0 79 5090.5 80 4200.0 81 3317.5 82 2435.0 83 2096.0 84 1757.0 85 1458.5 86 1160.0 87 849.0 88 538.0 89 361.5 90 185.0 91 113.0 92 41.0 93 29.5 94 18.0 95 14.5 96 11.0 97 9.0 98 7.0 99 7.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014969622619464893 2 0.004426992055146629 3 5.933082135763524E-4 4 2.2819546676013553E-4 5 0.0 6 5.476691202243253E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.2819546676013553E-4 47 0.0 48 0.0 49 0.0 50 9.127818670405421E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2191104.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.778777638030284 #Duplication Level Percentage of deduplicated Percentage of total 1 79.85719335715952 44.543366310661895 2 12.23985166034416 13.654479281696252 3 3.3557657657515874 5.615415373595166 4 1.4144259812329796 3.1557980917058868 5 0.7760576767659291 2.164377429330657 6 0.4692867626955175 1.5705745190918614 7 0.32463166462607346 1.2675290204808958 8 0.24709750608325343 1.1026237477383702 9 0.1833146990560365 0.920256285278619 >10 0.9726296397387358 9.790806633708167 >50 0.07879057400206088 3.060917070806916 >100 0.07016959745507649 8.22346747981543 >500 0.008562228772960806 3.1730847572700607 >1k 0.002222886316057104 1.7573039988198071 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.5639093352027105E-5 2 0.0 0.0 0.0 0.0 4.5639093352027105E-5 3 0.0 0.0 0.0 0.0 4.5639093352027105E-5 4 0.0 0.0 0.0 0.0 9.127818670405421E-5 5 0.0 4.5639093352027105E-5 0.0 0.0 9.127818670405421E-5 6 0.0 4.5639093352027105E-5 0.0 0.0 9.127818670405421E-5 7 0.0 4.5639093352027105E-5 0.0 0.0 9.127818670405421E-5 8 0.0 4.5639093352027105E-5 0.0 0.0 1.3691728005608132E-4 9 0.0 4.5639093352027105E-5 0.0 0.0 1.8255637340810842E-4 10 0.0 4.5639093352027105E-5 0.0 0.0 1.8255637340810842E-4 11 0.0 4.5639093352027105E-5 0.0 0.0 1.8255637340810842E-4 12 0.0 4.5639093352027105E-5 0.0 0.0 3.6511274681621684E-4 13 0.0 4.5639093352027105E-5 0.0 0.0 4.1075184016824395E-4 14 0.0 4.5639093352027105E-5 0.0 0.0 5.020300268722982E-4 15 0.0 4.5639093352027105E-5 0.0 4.5639093352027105E-5 5.020300268722982E-4 16 0.0 4.5639093352027105E-5 0.0 4.5639093352027105E-5 5.476691202243253E-4 17 0.0 4.5639093352027105E-5 0.0 4.5639093352027105E-5 5.933082135763524E-4 18 0.0 4.5639093352027105E-5 0.0 9.127818670405421E-5 6.389473069283795E-4 19 0.0 4.5639093352027105E-5 0.0 1.3691728005608132E-4 6.389473069283795E-4 20 0.0 9.127818670405421E-5 0.0 6.389473069283795E-4 6.845864002804066E-4 21 0.0 9.127818670405421E-5 0.0 7.302254936324337E-4 6.845864002804066E-4 22 0.0 9.127818670405421E-5 0.0 0.0010040600537445964 6.845864002804066E-4 23 0.0 9.127818670405421E-5 0.0 0.0013235337072087861 7.302254936324337E-4 24 0.0 9.127818670405421E-5 0.0 0.0020993982941932467 7.302254936324337E-4 25 0.0 9.127818670405421E-5 0.0 0.003012180161233789 7.302254936324337E-4 26 0.0 9.127818670405421E-5 0.0 0.004472631148498656 7.302254936324337E-4 27 0.0 9.127818670405421E-5 0.0 0.006069999415819605 8.671427736885151E-4 28 0.0 9.127818670405421E-5 0.0 0.012642028858511508 8.671427736885151E-4 29 0.0 9.127818670405421E-5 0.0 0.027429095104568292 8.671427736885151E-4 30 0.0 9.127818670405421E-5 0.0 0.05618172391634537 8.671427736885151E-4 31 0.0 9.127818670405421E-5 0.0 0.11797705631499007 8.671427736885151E-4 32 0.0 9.127818670405421E-5 0.0 0.19232313938544224 9.584209603925693E-4 33 0.0 9.127818670405421E-5 0.0 0.26799275616310314 9.584209603925693E-4 34 0.0 9.127818670405421E-5 0.0 0.35502650718541884 0.0010040600537445964 35 0.0 9.127818670405421E-5 0.0 0.4537438661058535 0.0010040600537445964 36 0.0 9.127818670405421E-5 0.0 0.5904785897885267 0.0010040600537445964 37 0.0 9.127818670405421E-5 0.0 0.791336239630798 0.0010040600537445964 38 0.0 9.127818670405421E-5 0.0 1.0600135821941816 0.0010953382404486505 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGTACG 200 0.0 19.800781 2 TAGATCG 190 0.0 19.684086 5 TAGGACG 470 0.0 18.723715 4 GTATCAA 3785 0.0 18.486748 1 TACCGTC 505 0.0 16.989994 7 TTAACGG 355 0.0 16.732288 35 ATACCGT 515 0.0 16.660091 6 TATAACG 80 0.0019885218 16.50065 2 TAACGGC 360 0.0 16.499897 36 ATACGAA 630 0.0 16.412596 40 GTTATAG 580 0.0 16.313221 1 CTATACA 285 0.0 16.210794 4 CGCAATA 615 0.0 16.09746 36 TGTAGGA 775 0.0 15.897401 2 GTCCTAA 375 0.0 15.8427925 1 ATCGATT 125 9.447747E-6 15.839902 29 AACGCAG 4350 0.0 15.829786 6 AGGACGT 550 0.0 15.599903 5 CTAGCGG 680 0.0 15.529314 29 TGCGTAG 270 0.0 15.481385 13 >>END_MODULE