##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062572_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 499739 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.853495524663874 32.0 32.0 32.0 32.0 32.0 2 31.41383802344824 32.0 32.0 32.0 32.0 32.0 3 31.524901998843397 32.0 32.0 32.0 32.0 32.0 4 31.640766480102613 32.0 32.0 32.0 32.0 32.0 5 31.59173888769938 32.0 32.0 32.0 32.0 32.0 6 35.16540634211058 36.0 36.0 36.0 36.0 36.0 7 35.17093722923366 36.0 36.0 36.0 36.0 36.0 8 35.147356920312404 36.0 36.0 36.0 36.0 36.0 9 35.174268968401506 36.0 36.0 36.0 36.0 36.0 10 35.148591564796824 36.0 36.0 36.0 36.0 36.0 11 35.21302519915396 36.0 36.0 36.0 36.0 36.0 12 35.12002265182425 36.0 36.0 36.0 36.0 36.0 13 35.13176678226034 36.0 36.0 36.0 36.0 36.0 14 35.09661443273389 36.0 36.0 36.0 36.0 36.0 15 35.104674640162166 36.0 36.0 36.0 36.0 36.0 16 35.078362905436634 36.0 36.0 36.0 36.0 36.0 17 35.08910251151101 36.0 36.0 36.0 36.0 36.0 18 35.0768401105377 36.0 36.0 36.0 36.0 36.0 19 34.98338932922986 36.0 36.0 36.0 36.0 36.0 20 34.917152753737454 36.0 36.0 36.0 36.0 36.0 21 34.8102989760655 36.0 36.0 36.0 32.0 36.0 22 34.797098085200474 36.0 36.0 36.0 32.0 36.0 23 34.71501323690967 36.0 36.0 36.0 32.0 36.0 24 34.69298974064461 36.0 36.0 36.0 32.0 36.0 25 34.668166783060755 36.0 36.0 36.0 32.0 36.0 26 34.59350781107738 36.0 36.0 36.0 32.0 36.0 27 34.534222864335185 36.0 36.0 36.0 32.0 36.0 28 34.42253456304191 36.0 36.0 36.0 32.0 36.0 29 34.36292744812792 36.0 36.0 36.0 32.0 36.0 30 34.29366729432764 36.0 36.0 36.0 32.0 36.0 31 34.230832494562165 36.0 36.0 36.0 32.0 36.0 32 34.14920188338313 36.0 36.0 36.0 32.0 36.0 33 34.0577461434869 36.0 36.0 36.0 32.0 36.0 34 33.938053664012614 36.0 36.0 36.0 32.0 36.0 35 33.7754667936663 36.0 36.0 36.0 32.0 36.0 36 33.68149574077668 36.0 36.0 36.0 27.0 36.0 37 33.47112792877882 36.0 36.0 36.0 21.0 36.0 38 33.344980079601555 36.0 36.0 36.0 21.0 36.0 39 32.95576691032719 36.0 36.0 36.0 14.0 36.0 40 32.76386073530383 36.0 36.0 36.0 14.0 36.0 41 32.81056311394548 36.0 36.0 36.0 14.0 36.0 42 32.43300402810267 36.0 36.0 36.0 14.0 36.0 43 32.505647948228976 36.0 36.0 36.0 14.0 36.0 44 32.47266473098958 36.0 36.0 36.0 14.0 36.0 45 32.03334740734663 36.0 36.0 36.0 14.0 36.0 46 32.19377114853954 36.0 36.0 36.0 14.0 36.0 47 31.90866832486558 36.0 36.0 36.0 14.0 36.0 48 31.9091645839128 36.0 36.0 36.0 14.0 36.0 49 31.957699919357903 36.0 36.0 36.0 14.0 36.0 50 31.30989176350055 36.0 32.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 4.0 21 22.0 22 97.0 23 297.0 24 845.0 25 1994.0 26 4461.0 27 8566.0 28 14020.0 29 18791.0 30 23474.0 31 29175.0 32 39920.0 33 43645.0 34 72937.0 35 241488.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.18993295306714 19.102571800260183 13.807064945461821 22.900430301210847 2 10.645489219833745 23.322740607627562 42.6976230403791 23.334147132159593 3 19.428897315577256 30.063133460734186 29.561067365703824 20.94690185798473 4 10.577763903813405 18.958171998471197 37.45530148858299 33.008762609132404 5 9.44553056695595 41.692363413701955 36.07603168854142 12.786074330800679 6 28.65155723467779 36.84935125227122 20.546212770044743 13.95287874300625 7 24.180021971469106 33.653166953149544 23.900676152951842 18.266134922429508 8 26.17386275635882 36.460032136775396 22.457722931370174 14.908382175495607 9 26.84801466365443 15.866482303762563 20.677993912822494 36.607509119760515 10 15.28798032573003 29.58644412383264 35.248399664624934 19.877175885812395 11 32.506968637628844 22.52095593900016 24.754922069320184 20.217153354050815 12 22.409697862284112 26.54005390814005 33.4824778534395 17.567770376136345 13 31.89044681323651 22.63281432907978 26.833407038474082 18.643331819209628 14 22.398091803921645 22.768685253702433 28.00181694844709 26.83140599392883 15 23.892872079225356 30.28120678994435 29.399746667760574 16.426174463069724 16 21.115822459323766 26.792385625296404 33.1244909842938 18.967300931086026 17 19.061149920258373 27.82192304382888 33.267765773733885 19.849161262178857 18 21.11061974350611 24.189226776377268 37.950610218534074 16.74954326158255 19 21.553651005825042 30.49331751174113 29.150016308513045 18.803015173920787 20 20.899109335072907 25.63238010241346 36.55308070812964 16.91542985438399 21 20.815665777535873 27.483346306772134 27.503156647770137 24.197831267921856 22 19.592427247022943 31.160865972037406 28.88147613054014 20.365230650399507 23 18.60231040603195 29.797354218902267 29.63166773055535 21.968667644510433 24 19.76911948036875 31.627909768899364 29.905810833254957 18.697159917476924 25 22.755878568612818 27.268434122612 29.12620387842454 20.84948343035064 26 16.126618094645405 28.22813508651516 33.369819045541774 22.27542777329766 27 20.984754041609722 30.50832534583052 31.607299010083263 16.899621602476493 28 18.85104024300685 27.296248641791017 30.83869780025173 23.014013314950404 29 18.471241988317903 28.8494594178161 32.532582007808074 20.146716586057924 30 21.818389199161963 26.92105278955615 32.257238278381315 19.003319732900575 31 18.798412771466705 27.27023506270273 31.36297147110792 22.568380694722645 32 17.42649663124151 30.897328405427633 31.725560742707692 19.950614220623166 33 17.77687953111524 29.886000492256958 32.28925499110536 20.04786498552244 34 16.892417842113584 31.33915904101941 34.48360043942939 17.28482267743762 35 20.31440411895009 30.46410226138044 31.308743163931574 17.912750455737893 36 18.595706959032615 30.494318034013755 32.10035638603351 18.80961862092012 37 20.62476612791877 30.06429356123897 30.131328553504925 19.17961175733733 38 20.00604315452666 31.86883553214778 27.36148269396625 20.763638619359305 39 19.369911093590854 29.256071669411433 31.05841249132047 20.315604745677245 40 22.36407404665235 29.815963933173116 28.83525200154481 18.984710018629723 41 18.958096126177864 28.145491946796223 32.492561116903026 20.403850810122883 42 21.93585051396829 31.770584244975876 29.80795975499211 16.485605486063726 43 19.17040695242917 29.674890292732808 29.046962514432533 22.10774024040549 44 18.677549680933446 29.890002581347463 32.71447695697154 18.71797078074755 45 20.363229605854254 30.020470685697937 29.823367797990553 19.79293191045726 46 19.26109281263382 27.955248550240324 31.671195706550233 21.11246293057562 47 22.7264632137976 27.61081284430473 30.87711785552058 18.785606086377086 48 17.983187223730788 34.25908324145204 26.582075843590353 21.17565369122682 49 18.78760713092234 28.5246898881216 33.460666467896246 19.22703651305982 50 16.83438755030126 35.312032881163965 25.577551481873538 22.27602808666124 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 34.0 1 36.5 2 39.0 3 136.5 4 234.0 5 265.0 6 296.0 7 304.0 8 312.0 9 427.5 10 543.0 11 796.0 12 1049.0 13 1872.5 14 2696.0 15 3871.5 16 5047.0 17 6198.5 18 7350.0 19 7893.5 20 8437.0 21 9127.5 22 9818.0 23 9747.0 24 9676.0 25 9228.0 26 8780.0 27 11049.5 28 13319.0 29 15703.0 30 18087.0 31 19768.0 32 21449.0 33 25433.0 34 29417.0 35 33660.0 36 37903.0 37 38484.0 38 39065.0 39 35178.5 40 31292.0 41 30231.0 42 29170.0 43 28914.5 44 28659.0 45 34323.0 46 39987.0 47 44558.0 48 49129.0 49 41870.5 50 34612.0 51 27220.0 52 19828.0 53 15680.5 54 11533.0 55 10576.5 56 9620.0 57 8923.5 58 8227.0 59 7230.5 60 6234.0 61 5596.5 62 4959.0 63 4230.0 64 3501.0 65 3282.5 66 3064.0 67 2625.5 68 2187.0 69 1901.0 70 1615.0 71 1311.5 72 1008.0 73 845.0 74 682.0 75 584.0 76 486.0 77 350.5 78 215.0 79 162.0 80 109.0 81 73.5 82 38.0 83 24.5 84 11.0 85 10.0 86 9.0 87 6.5 88 4.0 89 4.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 1.0 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.017809296452748334 2 0.005002611363131554 3 8.004178181010487E-4 4 4.0020890905052435E-4 5 0.0 6 0.0014007311816768351 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.0010445452526218E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 499739.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.78520493468914 #Duplication Level Percentage of deduplicated Percentage of total 1 76.5539988381871 32.75378528861789 2 12.386550074290973 10.599221667246567 3 4.267929059253334 5.478126583406069 4 1.9915345121908563 3.4083284895436785 5 1.1235585695154464 2.4035841826422275 6 0.6671766536866243 1.7127173913373408 7 0.47559205629552304 1.4243812515739915 8 0.335577877348212 1.148621460311298 9 0.25389951515281717 0.9776828509768345 >10 1.5968841984066118 13.341274469358892 >50 0.18964953144455982 5.737923140634379 >100 0.13835474502392867 11.76397064136387 >500 0.01364723675406099 3.9628676838332217 >1k 0.004705943708296893 3.0455409300711977 >5k 9.411887416593785E-4 2.241973969082559 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 5916 1.183817952971451 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 5219 1.0443451481673434 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 2135 0.42722301041143473 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 2032 0.4066122515953328 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1977 0.39560650659644336 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 1399 0.27994613188084183 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 1330 0.2661389245185987 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 1322 0.2645380888823966 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 1298 0.2597355819737903 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 1247 0.24953025479300195 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 1215 0.24312691224819355 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1171 0.234322316249082 No Hit GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 981 0.19630246988928218 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 952 0.19049944070804958 No Hit CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 922 0.18449630707229173 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATA 866 0.17329045761887704 No Hit GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 848 0.16968857743742233 No Hit CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 752 0.15047854980299716 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 731 0.14627635625796667 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 729 0.14587614734891613 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGACTGTCTCTTATA 721 0.14427531171271404 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 716 0.14327478944008773 No Hit ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC 711 0.14227426716746142 No Hit TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA 708 0.14167395380388562 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACCTGTCTCTTATA 683 0.13667134244075407 No Hit GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA 679 0.13587092462265304 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 664 0.1328693578047741 No Hit CAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTA 652 0.13046810435047093 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 642 0.12846705980521833 No Hit GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA 630 0.12606580635091516 No Hit GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 629 0.1258657018963899 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 608 0.1216635083513594 No Hit CTCTAATACTTGTAATGCTAGAGGTGATGTTTTTGGTAAACAGGCGGGGT 596 0.11926225489705625 No Hit GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG 562 0.11245870344319736 No Hit ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA 557 0.11145818117057103 No Hit GTGTATATCAATGAGTTACAATGAGAAACATGGAAAATGATAAAAACCAC 544 0.10885682326174262 No Hit ATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACT 537 0.10745609208006579 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 524 0.10485473417123738 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 524 0.10485473417123738 No Hit CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGA 512 0.10245348071693423 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 502 0.10045243617168162 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.0010445452526218E-4 0.0 4 0.0 0.0 0.0 2.0010445452526218E-4 0.0 5 0.0 0.0 0.0 2.0010445452526218E-4 0.0 6 0.0 0.0 0.0 2.0010445452526218E-4 0.0 7 0.0 0.0 0.0 2.0010445452526218E-4 0.0 8 0.0 0.0 0.0 2.0010445452526218E-4 0.0 9 0.0 0.0 0.0 2.0010445452526218E-4 0.0 10 0.0 0.0 0.0 2.0010445452526218E-4 0.0 11 0.0 0.0 0.0 2.0010445452526218E-4 0.0 12 0.0 0.0 0.0 2.0010445452526218E-4 0.0 13 0.0 0.0 0.0 2.0010445452526218E-4 0.0 14 0.0 0.0 0.0 2.0010445452526218E-4 0.0 15 0.0 0.0 0.0 4.0020890905052435E-4 0.0 16 0.0 0.0 0.0 0.0010005222726263108 0.0 17 0.0 0.0 0.0 0.0010005222726263108 0.0 18 0.0 0.0 0.0 0.0020010445452526217 0.0 19 0.0 0.0 0.0 0.003201671272404195 0.0 20 0.0 0.0 0.0 0.00460240245408103 0.0 21 0.0 0.0 0.0 0.006203238090283128 0.0 22 0.0 0.0 0.0 0.008804595999111537 0.0 23 0.0 0.0 0.0 0.01720898308917255 0.0 24 0.0 0.0 0.0 0.028614936997112494 0.0 25 0.0 0.0 0.0 0.03501827954192088 0.0 26 0.0 0.0 0.0 0.0444231889046082 0.0 27 0.0 0.0 0.0 0.05402820272182079 0.0 28 0.0 0.0 0.0 0.07063687244741755 0.0 29 0.0 0.0 0.0 0.0952497203540248 0.0 30 0.0 0.0 0.0 0.14107364044030984 0.0 31 0.0 0.0 0.0 0.22511751134091995 0.0 32 0.0 0.0 0.0 0.32997224551215737 0.0 33 0.0 0.0 0.0 0.4204194589575759 0.0 34 0.0 0.0 0.0 0.5444842207632384 0.0 35 0.0 0.0 0.0 0.6741519072956083 0.0 36 0.0 0.0 0.0 0.8546461252773948 0.0 37 0.0 0.0 0.0 1.1327913170675092 0.0 38 0.0 0.0 0.0 1.4015315994949364 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCGTT 20 7.852382E-4 43.999798 26 GACGTGT 25 0.0023515287 35.19984 22 TCGGTTA 25 0.0023515287 35.19984 42 CTGGACC 25 0.0023515287 35.19984 4 GATCATA 45 1.0356362E-6 34.222065 44 TCGTATA 95 0.0 32.420906 44 CACGATT 30 0.0057419576 29.3332 28 AGGCCGT 30 0.0057419576 29.3332 13 GCGGGGT 165 0.0 29.3332 44 CGTCTCG 55 4.953583E-6 27.999874 25 CGCGTCT 55 4.953583E-6 27.999874 23 TGTTGTA 40 7.0224E-4 27.502625 2 TCATAAG 40 7.0224E-4 27.502625 2 CGGGCTT 40 7.026509E-4 27.499872 31 GTACTCG 85 8.210918E-9 25.882236 35 GCGTCTC 60 9.738387E-6 25.666552 24 TATGTCG 70 1.1300926E-6 25.142742 16 ACAGGCG 185 0.0 24.972858 40 ACTGATA 45 0.0013971048 24.444332 3 GAATCTC 45 0.0013971048 24.444332 37 >>END_MODULE