##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062560_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1044371 Sequences flagged as poor quality 0 Sequence length 25 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.01401321944022 32.0 32.0 32.0 32.0 32.0 2 30.63693649095963 32.0 32.0 32.0 32.0 32.0 3 30.631563879119586 32.0 32.0 32.0 32.0 32.0 4 30.691347231970248 32.0 32.0 32.0 32.0 32.0 5 30.482821717569713 32.0 32.0 32.0 32.0 32.0 6 34.105620512250916 36.0 36.0 36.0 32.0 36.0 7 33.96124270015157 36.0 36.0 36.0 32.0 36.0 8 33.9274568137185 36.0 36.0 36.0 32.0 36.0 9 34.116909603962576 36.0 36.0 36.0 32.0 36.0 10 33.75233896766571 36.0 36.0 36.0 32.0 36.0 11 34.136534813777864 36.0 36.0 36.0 32.0 36.0 12 33.8800541186992 36.0 36.0 36.0 32.0 36.0 13 33.99584438863201 36.0 36.0 36.0 32.0 36.0 14 33.88124909634603 36.0 36.0 36.0 32.0 36.0 15 33.84490951970133 36.0 36.0 36.0 32.0 36.0 16 33.8341154628001 36.0 36.0 36.0 32.0 36.0 17 33.74757054724806 36.0 36.0 36.0 32.0 36.0 18 33.783769369314165 36.0 36.0 36.0 32.0 36.0 19 33.767635256053644 36.0 36.0 36.0 32.0 36.0 20 33.74631811875282 36.0 36.0 36.0 32.0 36.0 21 33.68589514645657 36.0 36.0 36.0 27.0 36.0 22 33.643822932655155 36.0 36.0 36.0 27.0 36.0 23 33.56943844668226 36.0 36.0 36.0 27.0 36.0 24 33.56200526441274 36.0 36.0 36.0 27.0 36.0 25 33.02535593194372 36.0 36.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 7.0 4 50.0 5 85.0 6 204.0 7 52.0 8 162.0 9 199.0 10 131.0 11 32.0 12 86.0 13 62.0 14 215.0 15 277.0 16 389.0 17 556.0 18 886.0 19 1298.0 20 2009.0 21 2843.0 22 4332.0 23 6163.0 24 8402.0 25 11526.0 26 15473.0 27 19348.0 28 25239.0 29 33144.0 30 41861.0 31 55878.0 32 78698.0 33 109374.0 34 228646.0 35 396744.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.120860947762644 17.20305930052064 11.393950536775668 25.282129214941047 2 15.262159015175309 20.637673221440007 37.952922836503475 26.147244926881207 3 19.18364259299335 25.08852633574702 28.482594448838576 27.245236622421054 4 11.979885406960431 16.130842535603232 36.23480560075157 35.654466456684766 5 13.37759965669972 37.81274425661696 34.474091556958726 14.335564529724593 6 33.41214339087617 35.497767899909945 17.713294886287436 13.376793822926448 7 28.852822501439686 31.220421777428996 21.643377783910214 18.283377937221108 8 27.995077687433152 33.65880400072071 20.304635177667116 18.04148313417902 9 27.00381377579139 14.8386453667752 18.56635001816312 39.59119083927029 10 15.039008948378573 27.9749476077899 32.986768210726936 23.99927523310459 11 36.542661402738446 21.428297512928133 22.250290966892088 19.778750117441334 12 23.243762032967457 24.408514930467664 30.202652430371785 22.145070606193094 13 30.158810812365484 20.252525010426005 25.330348540119747 24.258315637088774 14 23.325372727943833 19.98872540513282 25.69495509815896 30.99094676876439 15 25.227221091562356 27.609339815002105 23.939099666681685 23.22433942675385 16 25.211927976601885 25.984675424023713 25.600171018663463 23.203225580710935 17 23.238514342690596 26.32104233778187 27.028877128393923 23.41156619113361 18 24.491173436319496 24.71859695413562 28.42851499729623 22.361714612248655 19 24.347607647015394 27.38547358550446 25.47726730132919 22.78965146615096 20 24.09216022579869 24.87227398799486 27.813543511211797 23.222022274994654 21 25.054171284808646 25.88025940854545 24.38599485324855 24.679574453397354 22 23.927884730646593 26.450672484476517 25.286758888542593 24.3346838963343 23 22.917267970308945 25.964523005198142 25.51528326076138 25.602925763731538 24 23.170285026109337 27.27855007373514 25.620995625751497 23.93016927440403 25 24.619926439849813 25.564740986196927 25.161847671426212 24.653484902527047 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 236.0 1 236.0 2 486.5 3 737.0 4 737.0 5 737.0 6 1908.5 7 3080.0 8 3080.0 9 3080.0 10 3208.5 11 3337.0 12 3337.0 13 3337.0 14 3493.5 15 3650.0 16 3650.0 17 3650.0 18 5865.5 19 8081.0 20 8081.0 21 8081.0 22 12857.0 23 17633.0 24 17633.0 25 17633.0 26 26450.5 27 35268.0 28 35268.0 29 35268.0 30 44690.5 31 54113.0 32 54113.0 33 54113.0 34 63185.0 35 72257.0 36 72257.0 37 72257.0 38 80015.0 39 87773.0 40 87773.0 41 87773.0 42 101222.5 43 114672.0 44 114672.0 45 114672.0 46 143368.0 47 172064.0 48 172064.0 49 172064.0 50 155462.0 51 138860.0 52 138860.0 53 138860.0 54 121870.5 55 104881.0 56 104881.0 57 104881.0 58 94025.0 59 83169.0 60 83169.0 61 83169.0 62 73007.0 63 62845.0 64 62845.0 65 62845.0 66 51399.0 67 39953.0 68 39953.0 69 39953.0 70 29980.5 71 20008.0 72 20008.0 73 20008.0 74 15282.0 75 10556.0 76 10556.0 77 10556.0 78 8494.5 79 6433.0 80 6433.0 81 6433.0 82 4440.5 83 2448.0 84 2448.0 85 2448.0 86 1858.0 87 1268.0 88 1268.0 89 1268.0 90 850.5 91 433.0 92 433.0 93 433.0 94 272.0 95 111.0 96 111.0 97 111.0 98 308.0 99 505.0 100 505.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0076601131207205105 2 0.004117310802387275 3 0.004691819286441312 4 0.014745717757386981 5 0.03705579722148546 6 0.04892897255860226 7 0.07085604636666472 8 0.09182560603463712 9 0.10034748188143869 10 0.12227455568950113 11 0.12418958396968127 12 0.13433923385463595 13 0.12505134669576234 14 0.1262003636638704 15 0.1171997307470238 16 0.11585921095089771 17 0.12744513204598748 18 0.13242420557445583 19 0.13424348244062695 20 0.1262003636638704 21 0.13242420557445583 22 0.15281925675837418 23 0.14343561818549155 24 0.13874379889905025 25 0.13548825082274404 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 1044371.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.4267100215647 #Duplication Level Percentage of deduplicated Percentage of total 1 79.61925982508255 42.53795106806301 2 12.474735449039684 13.329681468631541 3 3.6631797345428256 5.871349243028757 4 1.4322928366466745 3.0609077619794487 5 0.7208051346158559 1.9255123454588123 6 0.4144342353975534 1.3285114630556383 7 0.27375204563871186 1.0237969812104724 8 0.20625546329114788 0.8815640662095713 9 0.14020228916307803 0.6741492342727801 >10 0.8616900567417566 8.64063779283705 >50 0.09517684885624209 3.5156464672900256 >100 0.08600640393618862 8.906221908089288 >500 0.008977703711597063 3.220460476410042 >1k 0.0028728651877110603 3.2834863777237175 >5k 1.7955407423194127E-4 0.8204878750926421 >10k+ 1.7955407423194127E-4 0.9796354706472655 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGAAGCAGTGGTATCAACG 10212 0.9778134398599733 No Hit TCCATGTACTCTGCGTTGATACCAC 8553 0.8189618440190316 No Hit GAGTACATGGAAGCAGTGGTATCAA 4136 0.3960278483412504 No Hit CATGTACTCTGCGTTGATACCACTG 3616 0.34623711305656707 No Hit GCTTCCATGTACTCTGCGTTGATAC 2821 0.27011473891940696 No Hit CCCATGTACTCTGCGTTGATACCAC 2442 0.2338249530099936 No Hit GCGTTGATACCACTGCTTCCATGTA 2380 0.2278883653414352 No Hit CATGGAAGCAGTGGTATCAACGCAG 2374 0.22731385685738115 No Hit GTATCAACGCAGAGTACTTTTTTTT 2271 0.2174514612144535 No Hit GTACATGGGAAGCAGTGGTATCAAC 2035 0.19485412750832798 No Hit GTACTTTTTTTTTTTTTTTTTTTTT 1837 0.17589534753454472 No Hit GTATCAACGCAGAGTACATGGAAGC 1727 0.16536269199355402 No Hit TATCAACGCAGAGTACTTTTTTTTT 1723 0.164979686337518 No Hit ACGCAGAGTACATGGAAGCAGTGGT 1507 0.14429738091157263 No Hit ACTCTGCGTTGATACCACTGCTTCC 1459 0.1397013130391403 No Hit CAGTGGTATCAACGCAGAGTACATG 1316 0.1260088608358524 No Hit TATCAACGCAGAGTACATGGAAGCA 1299 0.1243810867976993 No Hit GAGTACTTTTTTTTTTTTTTTTTTT 1285 0.12304056700157319 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.575141400900638E-5 2 0.0 0.0 0.0 0.0 9.575141400900638E-5 3 0.0 0.0 0.0 0.0 9.575141400900638E-5 4 0.0 0.0 0.0 0.0 9.575141400900638E-5 5 0.0 9.575141400900638E-5 0.0 0.0 9.575141400900638E-5 6 0.0 9.575141400900638E-5 0.0 0.0 1.9150282801801277E-4 7 0.0 9.575141400900638E-5 0.0 0.0 1.9150282801801277E-4 8 0.0 9.575141400900638E-5 0.0 0.0 1.9150282801801277E-4 9 0.0 9.575141400900638E-5 0.0 0.0 1.9150282801801277E-4 10 0.0 9.575141400900638E-5 0.0 0.0 2.872542420270191E-4 11 0.0 9.575141400900638E-5 0.0 0.0 2.872542420270191E-4 12 0.0 1.9150282801801277E-4 0.0 0.0 4.787570700450319E-4 13 0.0 1.9150282801801277E-4 0.0 0.0 4.787570700450319E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGCCA 150 0.0 13.936112 16 ATCCCGT 110 1.8553692E-10 13.819612 10 TTAGGCA 55 1.96384E-4 13.814311 4 CGTTATT 55 1.9694385E-4 13.809677 2 GTAATAC 50 0.0015043103 13.293726 3 TCCAACG 115 3.7471182E-10 13.22193 18 CGCATCG 145 0.0 13.104804 13 GTCCTAT 200 0.0 12.815264 1 CAAGACG 205 0.0 12.50869 4 ATCCCCG 100 1.437802E-7 12.3518715 12 CCGTCGT 85 3.9352417E-6 12.29539 9 ACCGTCG 85 3.9352417E-6 12.29539 8 TGGACCG 85 3.9415772E-6 12.293622 5 CGCCAGT 155 1.8189894E-12 12.262274 18 CGGTCCA 155 1.8189894E-12 12.259333 10 ACGAGAC 70 1.0867475E-4 12.218479 19 ACGGTAT 110 3.8025973E-8 12.09216 9 CGTGGAA 175 0.0 11.944094 9 CGAACGA 80 2.8583996E-5 11.877369 16 CCCGTTT 120 9.973519E-9 11.8768 12 >>END_MODULE