FastQCFastQC Report
Thu 2 Feb 2017
SRR4062555_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062555_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2060994
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGTACG1650.021.3332752
GTATCAA31000.021.221871
CGCAATA6100.019.47535736
ATACCGT4650.018.9246796
TACCGTC4600.018.652127
TTAACGG3600.018.3332835
CGTCGTA4600.017.69560210
CTAGCGG7100.017.35206629
ACCGTCG4750.017.1367958
CAATACG7200.017.11106338
GTATTAG6100.016.952831
TATTGGG1854.2382453E-1016.6486032
ATACGAA7150.016.6153440
TAACGGC4000.016.49995436
TCTAGCG7350.016.4625428
TGCGTAG2151.2732926E-1116.3720513
TAGCGGC7350.016.16322130
AATACGA7400.016.0540139
GTATATA2750.016.0018981
GCAATAC7700.015.99995537
Produced by FastQC (version 0.11.5)