##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062545_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1041983 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.174404956702748 32.0 32.0 32.0 32.0 32.0 2 31.414777400399046 32.0 32.0 32.0 32.0 32.0 3 31.509981448833617 32.0 32.0 32.0 32.0 32.0 4 31.627555343993137 32.0 32.0 32.0 32.0 32.0 5 31.560415093144513 32.0 32.0 32.0 32.0 32.0 6 35.167175472152614 36.0 36.0 36.0 36.0 36.0 7 35.1806459414405 36.0 36.0 36.0 36.0 36.0 8 35.14071150872903 36.0 36.0 36.0 36.0 36.0 9 35.235740890206465 36.0 36.0 36.0 36.0 36.0 10 35.134557857469844 36.0 36.0 36.0 36.0 36.0 11 35.24625641685133 36.0 36.0 36.0 36.0 36.0 12 35.159917196345816 36.0 36.0 36.0 36.0 36.0 13 35.19075647107486 36.0 36.0 36.0 36.0 36.0 14 35.139679822031646 36.0 36.0 36.0 36.0 36.0 15 35.117284063175696 36.0 36.0 36.0 36.0 36.0 16 35.1136851560918 36.0 36.0 36.0 36.0 36.0 17 35.09105714776537 36.0 36.0 36.0 36.0 36.0 18 35.09869258903456 36.0 36.0 36.0 36.0 36.0 19 35.06924297229418 36.0 36.0 36.0 36.0 36.0 20 35.048477758274366 36.0 36.0 36.0 36.0 36.0 21 35.00595115275393 36.0 36.0 36.0 36.0 36.0 22 34.976313433136625 36.0 36.0 36.0 36.0 36.0 23 34.90359919499647 36.0 36.0 36.0 32.0 36.0 24 34.87091919925757 36.0 36.0 36.0 32.0 36.0 25 34.82728221093818 36.0 36.0 36.0 32.0 36.0 26 34.77191086610818 36.0 36.0 36.0 32.0 36.0 27 34.72345326171348 36.0 36.0 36.0 32.0 36.0 28 34.677787449507335 36.0 36.0 36.0 32.0 36.0 29 34.63674839224824 36.0 36.0 36.0 32.0 36.0 30 34.60930648580639 36.0 36.0 36.0 32.0 36.0 31 34.58632626444002 36.0 36.0 36.0 32.0 36.0 32 34.5319539762165 36.0 36.0 36.0 32.0 36.0 33 34.4746305841842 36.0 36.0 36.0 32.0 36.0 34 34.43572879787866 36.0 36.0 36.0 32.0 36.0 35 34.338946028869955 36.0 36.0 36.0 32.0 36.0 36 34.304948353284075 36.0 36.0 36.0 32.0 36.0 37 34.22349596874421 36.0 36.0 36.0 32.0 36.0 38 34.139145264366114 36.0 36.0 36.0 32.0 36.0 39 33.98071081773887 36.0 36.0 36.0 32.0 36.0 40 33.86571182063431 36.0 36.0 36.0 32.0 36.0 41 33.87595862888358 36.0 36.0 36.0 32.0 36.0 42 33.672407323344046 36.0 36.0 36.0 27.0 36.0 43 33.72978733818114 36.0 36.0 36.0 27.0 36.0 44 33.708460694656246 36.0 36.0 36.0 27.0 36.0 45 33.4775749700331 36.0 36.0 36.0 21.0 36.0 46 33.63197096305794 36.0 36.0 36.0 27.0 36.0 47 33.48439082019572 36.0 36.0 36.0 21.0 36.0 48 33.51816584339668 36.0 36.0 36.0 21.0 36.0 49 33.5633901896672 36.0 36.0 36.0 21.0 36.0 50 32.9507343210014 36.0 36.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 10.0 21 34.0 22 135.0 23 390.0 24 1117.0 25 2564.0 26 5799.0 27 11068.0 28 17911.0 29 24727.0 30 32713.0 31 43688.0 32 62608.0 33 81996.0 34 167904.0 35 589319.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.105006867993424 17.421665999545013 11.892715319512877 25.58061181294869 2 14.87486311578701 21.18674893635808 36.48774064508575 27.450647302769166 3 19.279234838422383 25.132344698918207 28.299980037927934 27.28844042473147 4 12.244741271922162 16.150087045649542 35.22546454737222 36.37970713505608 5 13.43140914966943 37.50262720217125 33.940764868524724 15.1251987796346 6 34.58211209833605 34.32385328672966 17.08673311720593 14.007301497728358 7 29.06626896267782 31.020815158817676 21.293574450973672 18.619341427530827 8 28.811506521699492 32.382869970047494 20.384689577469114 18.4209339307839 9 27.170884745720418 14.740643561363283 18.364695009419542 39.72377668349675 10 15.389214603309268 27.58989350114157 32.7263496621346 24.294542233414557 11 36.92449876821407 21.571849060877195 21.05226284881807 20.45138932209067 12 23.31563950659464 24.6111500859419 29.34692792492776 22.726282482535705 13 30.738505330701173 19.76327828764961 25.043402819431794 24.454813562217424 14 24.021505149316255 19.493216300073993 25.065955970490883 31.41932258011887 15 25.951766967407337 26.078448496760505 24.65855968859377 23.31122484723839 16 26.052344424045305 25.568843253680722 25.026895832273656 23.351916490000317 17 23.727066564425712 25.62450634991166 27.123763055635266 23.524664030027363 18 25.524216805840403 23.552111694720548 28.460349161166736 22.463322338272313 19 24.466330064885895 27.677610863133083 25.58237514431617 22.273683927664848 20 23.971888216986265 23.820254265184747 28.769567257815147 23.43829026001384 21 25.215286621758704 25.811361605707578 24.17285118855106 24.800500583982657 22 23.638485464734067 26.076433108793523 25.47421599008813 24.81086543638428 23 22.811792514849092 25.105783875552675 25.685735755765688 26.396687853832546 24 22.92753336666721 27.585766754352036 25.26778267975581 24.21891719922494 25 25.180449201186583 24.625065859999633 24.733800839361102 25.460684099452678 26 22.86668784423546 25.086397762727415 26.286993165915373 25.759921227121747 27 25.58535024083886 25.81923121586437 25.69379730763362 22.901621235663153 28 24.124289935632348 23.806530432838155 26.346303154657996 25.722876476871505 29 22.989626510221374 26.14946692988273 27.537013559722183 23.323893000173708 30 25.314232573851974 24.783321800835523 26.837481993468227 23.064963631844282 31 23.14087657860061 25.434963910159762 25.8249894671986 25.599170044041024 32 23.087132899481087 25.963475411786945 26.22384434294993 24.725547345782033 33 23.132143230743687 25.167972989962408 26.340448932468185 25.359434846825717 34 22.81620717420534 26.410219744468 27.391617713532757 23.381955367793907 35 25.15856784611649 25.460588128597106 26.295438601205586 23.085405424080815 36 23.95941200576209 26.244094193475327 26.03219054437548 23.7643032563871 37 25.154441099326956 25.762704381933293 26.30474777419593 22.778106744543816 38 24.068051014267986 25.65656061567223 25.28851238455906 24.986875985500724 39 23.656432014725766 25.60953489644265 26.49477006822568 24.239263020605904 40 24.795030245215134 25.807522771484752 25.362409943348403 24.035037039951707 41 22.694995983619695 25.843991696601577 26.765215939223573 24.69579638055515 42 25.832475193933107 26.04188360078811 25.756082392898925 22.369558812379857 43 24.46863336541959 24.244637388517855 25.45300643100703 25.833722815055527 44 24.006917579269526 24.99081079057912 27.46206032152156 23.540211308629797 45 24.704529728412076 25.306458934550758 26.031038894108637 23.957972442928533 46 23.480517436464897 25.021425493506133 27.307355302341783 24.19070176768719 47 24.408195151163838 24.48142098423965 27.66621688282523 23.44416698177128 48 23.90461264723129 28.049018074191228 24.704529728412076 23.341839550165407 49 22.779450336521805 25.41586570990122 28.21475974176162 23.589924211815354 50 22.596146002381996 27.996905899616404 24.39655925288608 25.010388845115518 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 14.0 1 16.0 2 18.0 3 88.0 4 158.0 5 182.5 6 207.0 7 213.0 8 219.0 9 294.0 10 369.0 11 613.0 12 857.0 13 1414.5 14 1972.0 15 2810.0 16 3648.0 17 4554.5 18 5461.0 19 5881.5 20 6302.0 21 7038.5 22 7775.0 23 7927.0 24 8079.0 25 8572.5 26 9066.0 27 10812.5 28 12559.0 29 13954.0 30 15349.0 31 16404.0 32 17459.0 33 20039.5 34 22620.0 35 25506.5 36 28393.0 37 33424.5 38 38456.0 39 40985.5 40 43515.0 41 48477.0 42 53439.0 43 57331.0 44 61223.0 45 72445.0 46 83667.0 47 92501.0 48 101335.0 49 96304.5 50 91274.0 51 80678.5 52 70083.0 53 65651.5 54 61220.0 55 61969.0 56 62718.0 57 60309.0 58 57900.0 59 53182.0 60 48464.0 61 42387.0 62 36310.0 63 31373.0 64 26436.0 65 22785.0 66 19134.0 67 16770.5 68 14407.0 69 13076.5 70 11746.0 71 9288.0 72 6830.0 73 6078.0 74 5326.0 75 3933.0 76 2540.0 77 2302.0 78 2064.0 79 1693.0 80 1322.0 81 1078.0 82 834.0 83 704.5 84 575.0 85 477.5 86 380.0 87 282.0 88 184.0 89 112.5 90 41.0 91 27.0 92 13.0 93 13.0 94 13.0 95 9.0 96 5.0 97 3.5 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.018618345980692584 2 0.004222717645105535 3 6.717959889940623E-4 4 9.597085557058033E-5 5 0.0 6 4.798542778529016E-4 7 1.9194171114116066E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 9.597085557058033E-5 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1041983.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.81868185858904 #Duplication Level Percentage of deduplicated Percentage of total 1 79.87648152191304 44.5859991005513 2 12.700331334740108 14.178315085450555 3 3.5144619522738814 5.885179008542747 4 1.3581954829440488 3.0325072625690623 5 0.6609093817404439 1.844554525836331 6 0.3954026587579083 1.3242513129148754 7 0.2478329131631978 0.9683594573760702 8 0.1641662925118958 0.7330836842900463 9 0.12953696150189367 0.6507524198702249 >10 0.7610402061269032 8.291622248562499 >50 0.09306123319577565 3.6433118734613523 >100 0.08958679279009414 9.567009735239285 >500 0.006744951255668889 2.5246355454894993 >1k 0.001902422149034815 1.6366882471026678 >5k 3.458949361881482E-4 1.1337304927435254 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 6098 0.5852302772693988 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 5646 0.5418514505514965 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 2697 0.25883339747385514 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 2341 0.22466777289072856 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 1501 0.14405225421144108 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 1497 0.14366837078915873 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 1447 0.13886982801062975 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 1404 0.13474308122109477 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 1401 0.13445516865438303 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 1344 0.12898482988685994 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1160 0.11132619246187318 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 1111 0.10662362053891475 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1051 0.10086536920467992 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.87912566711741E-4 2 0.0 0.0 0.0 0.0 2.87912566711741E-4 3 0.0 0.0 0.0 0.0 2.87912566711741E-4 4 0.0 0.0 0.0 0.0 2.87912566711741E-4 5 0.0 0.0 0.0 0.0 3.838834222823213E-4 6 0.0 0.0 0.0 0.0 4.7985427785290165E-4 7 0.0 0.0 0.0 0.0 4.7985427785290165E-4 8 0.0 0.0 0.0 0.0 4.7985427785290165E-4 9 0.0 0.0 0.0 9.597085557058033E-5 4.7985427785290165E-4 10 0.0 0.0 0.0 9.597085557058033E-5 4.7985427785290165E-4 11 0.0 0.0 0.0 9.597085557058033E-5 4.7985427785290165E-4 12 0.0 0.0 0.0 9.597085557058033E-5 5.75825133423482E-4 13 0.0 0.0 0.0 9.597085557058033E-5 5.75825133423482E-4 14 0.0 0.0 0.0 1.9194171114116066E-4 5.75825133423482E-4 15 0.0 0.0 0.0 2.87912566711741E-4 8.63737700135223E-4 16 0.0 0.0 0.0 2.87912566711741E-4 8.63737700135223E-4 17 0.0 0.0 0.0 4.7985427785290165E-4 8.63737700135223E-4 18 0.0 0.0 0.0 0.0010556794112763835 8.63737700135223E-4 19 0.0 0.0 0.0 0.0014395628335587048 8.63737700135223E-4 20 0.0 0.0 0.0 0.002015387966982187 0.0010556794112763835 21 0.0 0.0 0.0 0.0026871839559762492 0.001151650266846964 22 0.0 0.0 0.0 0.0037428633672526327 0.001151650266846964 23 0.0 0.0 0.0 0.006334076467658302 0.001151650266846964 24 0.0 0.0 0.0 0.010268881546052095 0.001151650266846964 25 0.0 0.0 0.0 0.013819803202163567 0.001151650266846964 26 0.0 0.0 0.0 0.01794654999169852 0.0014395628335587048 27 0.0 0.0 0.0 0.024184655603786243 0.0015355336891292853 28 0.0 0.0 0.0 0.034069653727556014 0.0015355336891292853 29 0.0 0.0 0.0 0.05124843687468989 0.0015355336891292853 30 0.0 0.0 0.0 0.07792833472331122 0.0015355336891292853 31 0.0 0.0 0.0 0.1292727424535717 0.0015355336891292853 32 0.0 0.0 0.0 0.19395709910814285 0.0015355336891292853 33 0.0 0.0 0.0 0.25297917528404973 0.0015355336891292853 34 0.0 9.597085557058033E-5 0.0 0.3303316848739375 0.0015355336891292853 35 0.0 9.597085557058033E-5 0.0 0.40566880649684306 0.0015355336891292853 36 0.0 9.597085557058033E-5 0.0 0.5221774251595276 0.0015355336891292853 37 0.0 9.597085557058033E-5 0.0 0.7064414678550418 0.0015355336891292853 38 0.0 9.597085557058033E-5 0.0 0.8937765779288146 0.0016315045446998655 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGAACCG 30 0.005744807 29.333176 5 GATTTCG 70 1.1320735E-6 25.142721 41 CTATGCG 195 0.0 24.820377 38 ATTTCGT 65 1.813156E-5 23.692177 42 ATGCGTT 180 0.0 23.222097 40 GATCTAG 50 0.002577408 22.004105 1 TATGCGG 60 2.872515E-4 21.999882 39 GTTTCGG 50 0.0025802827 21.99988 21 TATGCGT 175 0.0 21.371311 39 TGGTATA 430 0.0 20.97663 44 CGGCTAA 105 7.7439836E-8 20.952267 9 ACCGTGT 75 5.4719356E-5 20.533222 8 GGTTTCG 55 0.004483346 19.999891 20 CGGTCCA 280 0.0 19.642752 10 ATCACGG 125 2.2871973E-8 19.359894 35 TAAGGGG 80 8.987432E-5 19.249895 4 TAGGACG 115 2.0208427E-7 19.130331 4 CCTTATA 70 8.119971E-4 18.857944 2 GTCTTAG 165 8.185452E-11 18.670147 1 AATCACG 120 3.1611125E-7 18.333235 34 >>END_MODULE