##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062540_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1174662 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.08613456466626 32.0 32.0 32.0 32.0 32.0 2 31.389073622880453 32.0 32.0 32.0 32.0 32.0 3 31.48717588548876 32.0 32.0 32.0 32.0 32.0 4 31.605993043105165 32.0 32.0 32.0 32.0 32.0 5 31.545637809003782 32.0 32.0 32.0 32.0 32.0 6 35.11785773269247 36.0 36.0 36.0 36.0 36.0 7 35.12212108674665 36.0 36.0 36.0 36.0 36.0 8 35.081847373968 36.0 36.0 36.0 36.0 36.0 9 35.161608190270904 36.0 36.0 36.0 36.0 36.0 10 35.075328903122774 36.0 36.0 36.0 36.0 36.0 11 35.197839037953045 36.0 36.0 36.0 36.0 36.0 12 35.10418911993408 36.0 36.0 36.0 36.0 36.0 13 35.12440770196022 36.0 36.0 36.0 36.0 36.0 14 35.09015699835357 36.0 36.0 36.0 36.0 36.0 15 35.075833729191885 36.0 36.0 36.0 36.0 36.0 16 35.08007494921944 36.0 36.0 36.0 36.0 36.0 17 35.06375791504279 36.0 36.0 36.0 36.0 36.0 18 35.05876584072695 36.0 36.0 36.0 36.0 36.0 19 35.02887043251591 36.0 36.0 36.0 36.0 36.0 20 34.98650675683729 36.0 36.0 36.0 36.0 36.0 21 34.95971947675161 36.0 36.0 36.0 36.0 36.0 22 34.96889062555867 36.0 36.0 36.0 36.0 36.0 23 34.93233117271181 36.0 36.0 36.0 32.0 36.0 24 34.92992792820403 36.0 36.0 36.0 32.0 36.0 25 34.8972206473011 36.0 36.0 36.0 32.0 36.0 26 34.85086263112282 36.0 36.0 36.0 32.0 36.0 27 34.83788187580768 36.0 36.0 36.0 32.0 36.0 28 34.80630257895463 36.0 36.0 36.0 32.0 36.0 29 34.77662170054024 36.0 36.0 36.0 32.0 36.0 30 34.75647037190273 36.0 36.0 36.0 32.0 36.0 31 34.738981085622925 36.0 36.0 36.0 32.0 36.0 32 34.68414999378545 36.0 36.0 36.0 32.0 36.0 33 34.62093095716044 36.0 36.0 36.0 32.0 36.0 34 34.58281956852269 36.0 36.0 36.0 32.0 36.0 35 34.52217999730986 36.0 36.0 36.0 32.0 36.0 36 34.48192331070555 36.0 36.0 36.0 32.0 36.0 37 34.44587464308882 36.0 36.0 36.0 32.0 36.0 38 34.39697802431678 36.0 36.0 36.0 32.0 36.0 39 34.33641847612334 36.0 36.0 36.0 32.0 36.0 40 34.28107659905573 36.0 36.0 36.0 32.0 36.0 41 34.2410463605701 36.0 36.0 36.0 32.0 36.0 42 34.16359429350741 36.0 36.0 36.0 32.0 36.0 43 34.13669549197982 36.0 36.0 36.0 32.0 36.0 44 34.08232240423202 36.0 36.0 36.0 32.0 36.0 45 33.964197360602455 36.0 36.0 36.0 32.0 36.0 46 33.96801888543258 36.0 36.0 36.0 32.0 36.0 47 33.864917738038685 36.0 36.0 36.0 32.0 36.0 48 33.814113336432094 36.0 36.0 36.0 32.0 36.0 49 33.770934107002695 36.0 36.0 36.0 27.0 36.0 50 33.2357486664249 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 2.0 20 3.0 21 45.0 22 150.0 23 427.0 24 1102.0 25 2752.0 26 5540.0 27 10382.0 28 17038.0 29 24694.0 30 33468.0 31 44682.0 32 62849.0 33 92515.0 34 188411.0 35 690600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.748569959180614 18.110728328857448 11.966533894394104 25.174167817567835 2 15.39374435987809 21.159949600721937 37.34501370656042 26.101292332839556 3 18.648384971234083 25.713784654885607 28.75817049105524 26.87965988282507 4 12.100842625367978 16.101312547779703 35.81200379343164 35.98584103342068 5 13.587312775930439 37.68360600751535 33.35751050089302 15.371570715661187 6 33.093802621699254 35.373189473021085 17.53114523546428 14.001862669815385 7 29.027498974172993 31.35020967733697 21.29719017044903 18.325101178041002 8 28.397275131058976 32.163039240223995 20.228116683777973 19.211568944939057 9 27.664213194944587 14.154369512251183 19.223146743488766 38.95827054931546 10 15.839194593849124 27.44772538823934 32.128561237189935 24.584518780721602 11 36.274690081061614 21.684109982275753 22.301223671149657 19.739976265512972 12 24.238376656433935 24.592350820916995 29.563312680583863 21.605959842065207 13 29.976367670019123 20.062026353112643 25.79559056137 24.166015415498247 14 23.58814705847299 19.74389228561067 26.641110378985616 30.026850276930727 15 24.876773063230104 27.020794066718768 24.574898992220742 23.52753387783039 16 24.578304227088303 26.136709964228004 25.405010122060645 23.879975686623045 17 22.900204484353797 25.968065707412002 26.902206762455922 24.229523045778276 18 23.92986237743283 24.637385052040504 28.567962528795515 22.864790041731155 19 24.316016011414348 25.916987184398575 27.12908053550723 22.63791626867984 20 24.757845235480506 23.942376615571117 28.007716262209897 23.292061886738484 21 25.70118042466684 24.48653314740751 26.21962743325314 23.59265899467251 22 24.513775026348007 24.849956838648055 26.69006063020682 23.946207504797123 23 23.139933019030153 24.847402912497383 27.235323863375164 24.777340205097296 24 23.387578724773594 25.93988738888293 27.150874038659634 23.521659847683846 25 24.09944307383741 24.803986167935967 26.92834194006446 24.16822881816216 26 23.199269236597424 25.417268967583865 27.597470591540375 23.785991204278336 27 24.297457481386132 25.65137886472875 26.919828852895556 23.13133480098956 28 23.273247964095205 25.00276675332989 27.61373058803298 24.11025469454192 29 23.037265187773166 25.756089836906277 27.851841636147253 23.354803339173312 30 23.71073551370522 25.49278005077205 27.62147749735669 23.175006938166042 31 23.29223214848186 25.601492173918967 26.8176718068687 24.288603870730473 32 23.072764761267496 25.835942594550605 26.884073886786158 24.207218757395744 33 23.052503613805502 25.390367612130127 27.180584712879106 24.37654406118526 34 23.359996322346344 25.683388072483833 27.634502520725114 23.322113084444716 35 24.34521590040369 25.50623072849892 27.02062380497539 23.127929566122 36 23.45491724427963 26.105466934318127 26.792217676233676 23.64739814516857 37 24.25659466297539 25.974195130173616 26.55206348719887 23.21714671965212 38 23.440104472605736 25.963724032955867 26.635747134069206 23.960424360369196 39 23.489565509057073 25.878678292138506 26.73177475733445 23.899981441469972 40 23.996945504323797 25.936652415758747 26.69244429461411 23.373957785303347 41 22.823756961577033 26.154587447282708 27.196078531526513 23.825577059613746 42 24.258978327382685 26.268066899244207 26.64775058697736 22.825204186395744 43 23.360847631063233 25.348398092387427 26.527375534409046 24.763378742140294 44 22.989677030498985 25.87450687942574 27.02326286199775 24.112553228077523 45 23.314110782505946 26.022719727036375 26.588244107666714 24.074925382790966 46 22.877219148997753 25.809892547813757 26.915657440182795 24.3972308630057 47 23.4450420631637 25.48954507764787 27.081662639976432 23.983750219211995 48 23.493055874796323 27.015005167443913 25.689091840886995 23.80284711687277 49 22.7960042974064 26.267896637500833 26.6995101569643 24.236588908128464 50 22.485702270099825 27.424314398524853 25.613069972468676 24.476913358906646 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 63.0 1 63.0 2 63.0 3 246.0 4 429.0 5 488.5 6 548.0 7 506.5 8 465.0 9 671.0 10 877.0 11 1251.0 12 1625.0 13 2891.5 14 4158.0 15 5858.5 16 7559.0 17 8712.5 18 9866.0 19 10477.0 20 11088.0 21 11717.0 22 12346.0 23 12480.0 24 12614.0 25 12019.5 26 11425.0 27 12563.0 28 13701.0 29 15910.0 30 18119.0 31 20875.5 32 23632.0 33 26725.5 34 29819.0 35 32847.5 36 35876.0 37 40579.5 38 45283.0 39 48091.5 40 50900.0 41 55992.5 42 61085.0 43 63893.0 44 66701.0 45 74466.0 46 82231.0 47 87256.5 48 92282.0 49 91960.5 50 91639.0 51 85580.5 52 79522.0 53 76474.5 54 73427.0 55 72388.0 56 71349.0 57 68560.0 58 65771.0 59 59963.0 60 54155.0 61 48070.5 62 41986.0 63 36320.5 64 30655.0 65 26574.0 66 22493.0 67 19462.5 68 16432.0 69 14761.0 70 13090.0 71 10178.5 72 7267.0 73 6495.5 74 5724.0 75 4221.0 76 2718.0 77 2436.0 78 2154.0 79 1782.5 80 1411.0 81 1149.0 82 887.0 83 735.5 84 584.0 85 488.0 86 392.0 87 285.5 88 179.0 89 111.5 90 44.0 91 26.5 92 9.0 93 8.5 94 8.0 95 5.5 96 3.0 97 4.5 98 6.0 99 4.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.018728791771590467 2 0.0035754966109399983 3 6.810469735123806E-4 4 0.0 5 0.0 6 3.405234867561903E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1174662.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.10951504461619 #Duplication Level Percentage of deduplicated Percentage of total 1 77.59893852978334 45.868356244724765 2 14.045690189884736 16.6046787118202 3 4.2262933170039405 7.494424452132159 4 1.6639041080878103 3.9341025963926044 5 0.7932675261611155 2.344482938601296 6 0.42481794837630255 1.5066469746463225 7 0.23367396397297882 0.9668648282297126 8 0.16661253730055817 0.7878709024151217 9 0.12455533867471232 0.6626165098752155 >10 0.583235474783499 6.460202547547329 >50 0.06692215712114113 2.793471365537115 >100 0.0658518463654547 7.519409633681678 >500 0.005366774696003417 2.1498589998877224 >1k 8.702877885410946E-4 0.9070132945089617 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 2465 0.20984759871350228 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 2230 0.1898418438665761 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2025 0.17239001517032135 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1697 0.1444670892563137 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 8.513087168904757E-5 0.0 10 0.0 0.0 0.0 5.107852301342855E-4 0.0 11 0.0 0.0 0.0 5.107852301342855E-4 0.0 12 0.0 0.0 0.0 5.107852301342855E-4 2.5539261506714274E-4 13 0.0 0.0 0.0 5.107852301342855E-4 4.256543584452379E-4 14 0.0 0.0 0.0 5.95916101823333E-4 4.256543584452379E-4 15 0.0 0.0 0.0 0.0011067013319576184 5.95916101823333E-4 16 0.0 0.0 0.0 0.0014472248187138088 5.95916101823333E-4 17 0.0 0.0 0.0 0.0015323556904028564 5.95916101823333E-4 18 0.0 0.0 0.0 0.0017026174337809515 6.810469735123806E-4 19 0.0 0.0 0.0 0.001787748305469999 6.810469735123806E-4 20 0.0 0.0 0.0 0.002043140920537142 6.810469735123806E-4 21 0.0 0.0 0.0 0.0024687952789823795 7.661778452014282E-4 22 0.0 0.0 0.0 0.004767328814586664 7.661778452014282E-4 23 0.0 0.0 0.0 0.008853610655660947 7.661778452014282E-4 24 0.0 0.0 0.0 0.014557379058827135 7.661778452014282E-4 25 0.0 0.0 0.0 0.01745182869625475 7.661778452014282E-4 26 0.0 0.0 0.0 0.02315559709942094 7.661778452014282E-4 27 0.0 0.0 0.0 0.029966066834544745 7.661778452014282E-4 28 0.0 0.0 0.0 0.044438315021682835 7.661778452014282E-4 29 0.0 0.0 0.0 0.06776417386448187 7.661778452014282E-4 30 0.0 0.0 0.0 0.11364971370487852 7.661778452014282E-4 31 0.0 0.0 0.0 0.20227095113317703 7.661778452014282E-4 32 0.0 0.0 0.0 0.30664139982394933 7.661778452014282E-4 33 0.0 0.0 0.0 0.4020731069873717 7.661778452014282E-4 34 0.0 0.0 0.0 0.5130837636698897 7.661778452014282E-4 35 0.0 0.0 0.0 0.6466541013500053 7.661778452014282E-4 36 0.0 0.0 0.0 0.8330907103490196 7.661778452014282E-4 37 0.0 0.0 0.0 1.0946127481777737 7.661778452014282E-4 38 0.0 0.0 0.0 1.4058512150729316 7.661778452014282E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTGTCG 50 8.34145E-5 26.399899 8 TATCTCG 50 0.0025804525 21.999916 27 TATACCG 50 0.0025804525 21.999916 5 GTATTAT 95 6.854989E-7 20.845573 1 GTGATCG 75 5.4726283E-5 20.533255 9 TTCGGTC 60 0.0074121454 18.333263 12 TAATACT 280 0.0 18.07136 4 TATCGTT 75 0.0012908742 17.599932 11 GTGTATA 225 1.8189894E-12 16.62499 1 TACCGTC 240 0.0 16.499937 7 TACGCTA 255 0.0 16.392094 9 GATTTCG 125 9.440077E-6 15.839939 41 ACGCTAT 265 0.0 15.773523 10 AGTGCGG 85 0.0029799512 15.529351 10 CGAGCCG 355 0.0 15.492898 15 ATACCGT 270 0.0 15.481421 6 GATCGAA 100 4.9436896E-4 15.399941 11 TAGGGTG 200 1.2751116E-9 15.399941 5 TATAAGC 100 4.9436896E-4 15.399941 3 CTAATAC 375 0.0 15.253274 3 >>END_MODULE