##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062539_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1354040 Sequences flagged as poor quality 0 Sequence length 25 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.17856341023899 32.0 32.0 32.0 32.0 32.0 2 30.867718088091934 32.0 32.0 32.0 32.0 32.0 3 30.853394286727127 32.0 32.0 32.0 32.0 32.0 4 30.91669965436767 32.0 32.0 32.0 32.0 32.0 5 30.735190245487576 32.0 32.0 32.0 32.0 32.0 6 34.38309872677321 36.0 36.0 36.0 32.0 36.0 7 34.25390608844643 36.0 36.0 36.0 32.0 36.0 8 34.25770065876931 36.0 36.0 36.0 32.0 36.0 9 34.3882507163747 36.0 36.0 36.0 32.0 36.0 10 34.098178783492365 36.0 36.0 36.0 32.0 36.0 11 34.40076881037488 36.0 36.0 36.0 32.0 36.0 12 34.18583129006529 36.0 36.0 36.0 32.0 36.0 13 34.302691944108005 36.0 36.0 36.0 32.0 36.0 14 34.21590499542111 36.0 36.0 36.0 32.0 36.0 15 34.16586216064518 36.0 36.0 36.0 32.0 36.0 16 34.16029511683554 36.0 36.0 36.0 32.0 36.0 17 34.09398245251248 36.0 36.0 36.0 32.0 36.0 18 34.11694853918643 36.0 36.0 36.0 32.0 36.0 19 34.08944048920268 36.0 36.0 36.0 32.0 36.0 20 34.084905172668456 36.0 36.0 36.0 32.0 36.0 21 34.06106983545538 36.0 36.0 36.0 32.0 36.0 22 34.01500472659596 36.0 36.0 36.0 32.0 36.0 23 33.98700629228088 36.0 36.0 36.0 32.0 36.0 24 33.963113349679475 36.0 36.0 36.0 32.0 36.0 25 33.53276343387197 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 7.0 4 44.0 5 132.0 6 230.0 7 51.0 8 212.0 9 246.0 10 153.0 11 50.0 12 96.0 13 92.0 14 245.0 15 280.0 16 432.0 17 608.0 18 807.0 19 1177.0 20 1727.0 21 2581.0 22 3800.0 23 5626.0 24 7790.0 25 10787.0 26 14918.0 27 19858.0 28 26738.0 29 36072.0 30 46508.0 31 64144.0 32 93809.0 33 136644.0 34 310657.0 35 567518.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.27581968908243 17.52966184317039 11.11240774989512 26.082110717852057 2 17.21672943145369 20.357061352425447 36.255250196270744 26.170959019850116 3 19.110027880869293 24.016100740412487 28.40687605014864 28.466995328569585 4 13.109185226877388 15.57462235113976 35.45655791649955 35.85963450548331 5 15.088486356537146 36.038778257342585 33.070565966922345 15.802169419197925 6 33.616864069276865 35.17285966558545 17.123414190821702 14.086862074315986 7 29.903784828022495 30.679182004754963 20.870023420069128 18.547009747153414 8 28.25331542536717 31.9328998265135 19.933207327088216 19.880577421031116 9 27.848751596726117 14.293064294838434 18.845803567204428 39.01238054123102 10 16.425316515596382 26.406158846724598 31.13819917912605 26.030325458552966 11 37.13027475180357 21.41325010702743 22.128540870430633 19.327934270738368 12 24.74968572062412 23.967462841085556 28.361162463950308 22.92168897434001 13 29.466554081032083 19.63345094687279 25.192095542022937 25.707899430072196 14 23.74884833857589 19.724207590391558 25.128697702001045 31.39824636903151 15 25.360918343657257 26.740932864677987 22.63497377491826 25.26317501674649 16 25.770946606356254 25.714534977427956 23.65207259134174 24.86244582487405 17 24.006994790877194 25.479450029021727 25.371200834051173 25.1423543460499 18 24.889299384158498 24.712710826623756 26.177330998538785 24.220658790678964 19 25.41912764656249 25.132942830330858 25.628257016149846 23.819672506956806 20 25.70469843321475 24.14759976249402 25.216598503239084 24.93110330105214 21 26.802504475711363 24.111309702957705 24.547677695539228 24.538508125791708 22 25.78400794639879 24.40670118685649 24.842924754023308 24.96636611272141 23 24.59558317815343 24.297031343135675 25.36544312428542 25.741942354425472 24 24.58897828787789 25.171641128793702 25.221484351890194 25.017896231438208 25 24.747169242054948 24.551574812465983 25.34053396909534 25.360721976383726 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 199.0 1 199.0 2 578.0 3 957.0 4 957.0 5 957.0 6 2406.0 7 3855.0 8 3855.0 9 3855.0 10 4072.5 11 4290.0 12 4290.0 13 4290.0 14 4443.5 15 4597.0 16 4597.0 17 4597.0 18 7547.0 19 10497.0 20 10497.0 21 10497.0 22 16146.5 23 21796.0 24 21796.0 25 21796.0 26 31447.0 27 41098.0 28 41098.0 29 41098.0 30 49735.0 31 58372.0 32 58372.0 33 58372.0 34 71211.0 35 84050.0 36 84050.0 37 84050.0 38 94709.0 39 105368.0 40 105368.0 41 105368.0 42 120571.0 43 135774.0 44 135774.0 45 135774.0 46 155176.0 47 174578.0 48 174578.0 49 174578.0 50 175890.5 51 177203.0 52 177203.0 53 177203.0 54 165391.5 55 153580.0 56 153580.0 57 153580.0 58 140646.5 59 127713.0 60 127713.0 61 127713.0 62 113814.5 63 99916.0 64 99916.0 65 99916.0 66 83854.5 67 67793.0 68 67793.0 69 67793.0 70 52090.0 71 36387.0 72 36387.0 73 36387.0 74 29129.0 75 21871.0 76 21871.0 77 21871.0 78 17718.0 79 13565.0 80 13565.0 81 13565.0 82 9772.5 83 5980.0 84 5980.0 85 5980.0 86 4425.5 87 2871.0 88 2871.0 89 2871.0 90 1915.5 91 960.0 92 960.0 93 960.0 94 577.5 95 195.0 96 195.0 97 195.0 98 385.0 99 575.0 100 575.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008271542938170217 2 0.0031756816637617796 3 0.004800449026616643 4 0.014992171575433519 5 0.03677882485007829 6 0.04652742902720747 7 0.06846178842574814 8 0.08840211515169419 9 0.09394109479779032 10 0.11661398481581045 11 0.11690939706360225 12 0.12850432778943016 13 0.117278662373342 14 0.12156213996632301 15 0.11210894803698561 16 0.10945023780685947 17 0.11853416442645713 18 0.12879974003722194 19 0.13049836046202476 20 0.12207911139995864 21 0.1285781808513781 22 0.1463029157188857 23 0.13633275235591266 24 0.13293551150630706 25 0.12939056453280554 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 1354040.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.839071646728065 #Duplication Level Percentage of deduplicated Percentage of total 1 81.56371672929951 46.36005938950088 2 11.881620338711011 13.50680539422433 3 3.0429462266072766 5.188747157738155 4 1.1665182974202226 2.6521526833714915 5 0.5823195547786574 1.6549251447677449 6 0.35350522392976896 1.205574525026207 7 0.21710812266430993 0.8638156897442337 8 0.1632276922179193 0.7422168394163514 9 0.11863771252514249 0.6068931697998451 >10 0.7108630558869949 7.8174091989511645 >50 0.09782262518626492 3.9045100519727676 >100 0.0924794991451501 10.854148549809633 >500 0.006893673891103825 2.618755305172036 >1k 0.002341247736601299 2.0239869005051894 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTT 3813 0.2816017252075271 No Hit TATCAACGCAGAGTACTTTTTTTTT 2565 0.18943310389648754 No Hit GTACTTTTTTTTTTTTTTTTTTTTT 2431 0.17953679359546248 No Hit GAGTACTTTTTTTTTTTTTTTTTTT 1817 0.13419101355942217 No Hit ACGCAGAGTACTTTTTTTTTTTTTT 1531 0.11306903784230894 No Hit GTACATGGAAGCAGTGGTATCAACG 1398 0.10324658060323182 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 2.2155918584384508E-4 0.0 10 0.0 0.0 0.0 2.2155918584384508E-4 0.0 11 0.0 0.0 0.0 2.2155918584384508E-4 0.0 12 0.0 0.0 0.0 2.2155918584384508E-4 0.0 13 0.0 0.0 0.0 3.692653097397418E-4 7.385306194794836E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGA 85 1.7103957E-8 14.53289 16 CGAACGT 80 1.2894634E-7 14.24867 4 GTACTAA 70 7.312423E-6 13.562138 1 GTAAGAC 80 2.0067728E-6 13.057899 3 CGACCAT 195 0.0 12.666888 10 AATCGTA 60 4.0920867E-4 12.66642 13 CCGACCA 190 0.0 12.500219 9 CGCGTAA 100 1.4415491E-7 12.350216 10 GCGTAAC 100 1.4415491E-7 12.350216 11 TCGCGTA 110 3.8107828E-8 12.091121 9 ACGAACG 95 1.038281E-6 12.001098 15 ACGTCTG 105 2.7167334E-7 11.762546 7 CAATACT 130 2.6175258E-9 11.6912155 4 CGTACTC 65 8.045978E-4 11.6881895 3 CTAATTC 65 8.045978E-4 11.6881895 3 ATATACG 230 0.0 11.565848 6 TCGAACG 100 1.936969E-6 11.395985 3 CGGTCCA 310 0.0 11.338909 10 GTCACGC 60 0.0058726068 11.083938 8 CGTCGTA 120 1.2741293E-7 11.083528 10 >>END_MODULE