##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062517_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1888620 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.319566667725642 32.0 32.0 32.0 32.0 32.0 2 31.407015704588535 32.0 32.0 32.0 32.0 32.0 3 31.492856689011024 32.0 32.0 32.0 32.0 32.0 4 31.596566275905158 32.0 32.0 32.0 32.0 32.0 5 31.52169891243342 32.0 32.0 32.0 32.0 32.0 6 35.116951530747315 36.0 36.0 36.0 36.0 36.0 7 35.126369518484395 36.0 36.0 36.0 36.0 36.0 8 35.06947083055353 36.0 36.0 36.0 36.0 36.0 9 35.21508350012178 36.0 36.0 36.0 36.0 36.0 10 35.07049485867988 36.0 36.0 36.0 36.0 36.0 11 35.209825163346785 36.0 36.0 36.0 36.0 36.0 12 35.11484046552509 36.0 36.0 36.0 36.0 36.0 13 35.16911236776059 36.0 36.0 36.0 36.0 36.0 14 35.133792928169775 36.0 36.0 36.0 36.0 36.0 15 35.08502133833169 36.0 36.0 36.0 36.0 36.0 16 35.097274200209675 36.0 36.0 36.0 36.0 36.0 17 35.06452542067753 36.0 36.0 36.0 36.0 36.0 18 35.08097605659159 36.0 36.0 36.0 36.0 36.0 19 35.067532907625676 36.0 36.0 36.0 36.0 36.0 20 35.06916266903877 36.0 36.0 36.0 36.0 36.0 21 35.068061335790155 36.0 36.0 36.0 36.0 36.0 22 35.05704959176541 36.0 36.0 36.0 36.0 36.0 23 35.00927237877392 36.0 36.0 36.0 36.0 36.0 24 34.98606760491788 36.0 36.0 36.0 36.0 36.0 25 34.95508943037773 36.0 36.0 36.0 32.0 36.0 26 34.91939246645699 36.0 36.0 36.0 32.0 36.0 27 34.905124376528896 36.0 36.0 36.0 32.0 36.0 28 34.89572545032881 36.0 36.0 36.0 32.0 36.0 29 34.86988383052176 36.0 36.0 36.0 32.0 36.0 30 34.86112134786246 36.0 36.0 36.0 32.0 36.0 31 34.856884391778124 36.0 36.0 36.0 32.0 36.0 32 34.82844140165835 36.0 36.0 36.0 32.0 36.0 33 34.80288994080334 36.0 36.0 36.0 32.0 36.0 34 34.799320138513835 36.0 36.0 36.0 32.0 36.0 35 34.777930976056595 36.0 36.0 36.0 32.0 36.0 36 34.75428619838824 36.0 36.0 36.0 32.0 36.0 37 34.75109868581292 36.0 36.0 36.0 32.0 36.0 38 34.71526299626182 36.0 36.0 36.0 32.0 36.0 39 34.71457678092999 36.0 36.0 36.0 32.0 36.0 40 34.70791848016012 36.0 36.0 36.0 32.0 36.0 41 34.67770223761265 36.0 36.0 36.0 32.0 36.0 42 34.652494943397826 36.0 36.0 36.0 32.0 36.0 43 34.651399963994876 36.0 36.0 36.0 32.0 36.0 44 34.62200866240959 36.0 36.0 36.0 32.0 36.0 45 34.5813191642575 36.0 36.0 36.0 32.0 36.0 46 34.596008725948046 36.0 36.0 36.0 32.0 36.0 47 34.58062447713145 36.0 36.0 36.0 32.0 36.0 48 34.546048437483456 36.0 36.0 36.0 32.0 36.0 49 34.53452044349843 36.0 36.0 36.0 32.0 36.0 50 34.017942201183935 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 9.0 21 39.0 22 143.0 23 406.0 24 1024.0 25 2620.0 26 5314.0 27 10042.0 28 17041.0 29 27142.0 30 40257.0 31 58726.0 32 88626.0 33 148602.0 34 332939.0 35 1155687.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.412917602674945 17.660397661859264 11.2968123291487 26.62987240631709 2 16.977018913422075 19.801350557808014 35.687481368010324 27.534149160759586 3 18.64529998252683 23.043455239567727 28.43456298547609 29.876681792429356 4 12.59434147085329 14.95130301627963 35.162219146487004 37.29213636638008 5 14.84724296046849 36.07983607078184 33.275989876205905 15.796931092543762 6 36.073476182508635 34.574332896328094 15.79678621124932 13.55540470991395 7 31.328271436286816 29.795617964439643 20.305672925204647 18.570437674068895 8 28.883576367930026 32.51352839639525 18.795416759326915 19.80747847634781 9 27.284419311454926 13.729813302834874 18.220499624064132 40.765267761646065 10 15.945028645254206 26.31090425813557 31.195105420889323 26.548961675720896 11 38.68856625472567 20.539865086677047 21.355963613643823 19.41560504495346 12 24.59690144126399 23.375692304433926 28.070813609937417 23.95659264436467 13 29.558195931420826 18.50441062786585 25.183467293579437 26.75392614713389 14 23.625398439071915 19.135718143406297 24.350054537175293 32.8888288803465 15 25.562050597790982 26.777806017091844 21.602069235738263 26.058074149378914 16 26.600745517891372 25.267179210216984 22.941512850652856 25.190562421238788 17 24.859738856943164 25.532081625737312 24.422011839332423 25.186167677987104 18 25.8391841662166 24.104266607364107 25.381018945049828 24.675530281369465 19 26.025563639059207 24.778462581143902 24.64291387362201 24.55305990617488 20 26.03657697154536 23.947538414291916 24.206457625144285 25.809426989018437 21 27.067435481992142 23.949550465419193 24.062807764399402 24.92020628818926 22 26.172125679067253 23.78165009371922 24.388707098304582 25.657517128908943 23 24.723501816140885 23.50377524329934 25.185532293420593 26.58719064713918 24 25.21926062415944 24.58377016022281 24.463735425866506 25.733233789751246 25 25.419300865181988 23.985820334424076 24.687973229130264 25.90690557126367 26 25.229797418220713 24.87414090711737 24.92454808272707 24.97151359193485 27 26.01222056316252 24.154514936832182 24.221018521460113 25.61224597854518 28 25.176266268492338 24.086264044646356 25.118922811364914 25.618546875496396 29 25.04426512480012 24.43932606876979 25.056602175133165 25.459806631296928 30 25.11796973451515 24.56560875136343 25.25664241615571 25.059779097965713 31 25.532081625737312 24.42444748017071 24.150967373002512 25.892503521089473 32 25.39483855937139 24.20878736855482 24.046605457953426 26.34976861412036 33 24.995181667037308 23.9999576410289 24.696127331067128 26.308733360866665 34 25.84506147345681 24.12422827249526 24.842954114644556 25.187756139403373 35 26.420561044572228 23.79769355402357 24.93275513337781 24.848990268026387 36 25.05702576484417 24.723660662282512 24.44372081202148 25.77559276085184 37 26.225445033940126 24.270843261217184 24.323421334095798 25.180290370746896 38 25.157522423780325 24.006629178977242 24.90951064798636 25.926337749256074 39 25.822928911056753 24.03352712562612 24.242462750579787 25.901081212737342 40 25.896686469485658 24.237114930478338 24.832046679586153 25.034151920449855 41 24.836388474123964 24.610826953013312 25.257171903294466 25.295612669568257 42 26.379419893890777 24.688979254693905 24.551630290900235 24.379970560515083 43 25.490199193061603 23.565248700109073 24.824527962215797 26.12002414461353 44 25.0464889707829 24.27153159449757 24.570744776609377 26.111234658110156 45 25.096896146392606 24.456799144348786 24.803930912518133 25.642373796740475 46 24.97843660202148 24.247372548272097 24.94169013622137 25.83250071348505 47 25.17776216378211 23.9952049619325 25.280323876864525 25.54670899742087 48 26.17493196090267 24.806313604642543 24.058624816003217 24.960129618451568 49 24.884624752464763 24.82500450064068 24.522667344410205 25.767703402484354 50 24.953272710521663 24.89788829715697 24.590150046224277 25.558688946097092 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7.0 1 11.0 2 15.0 3 76.5 4 138.0 5 163.0 6 188.0 7 175.0 8 162.0 9 250.0 10 338.0 11 477.0 12 616.0 13 1151.0 14 1686.0 15 2133.0 16 2580.0 17 2962.0 18 3344.0 19 3607.0 20 3870.0 21 4653.0 22 5436.0 23 6129.0 24 6822.0 25 8215.0 26 9608.0 27 11832.0 28 14056.0 29 15982.0 30 17908.0 31 19915.5 32 21923.0 33 25805.5 34 29688.0 35 34635.5 36 39583.0 37 49334.5 38 59086.0 39 66847.5 40 74609.0 41 83624.0 42 92639.0 43 95609.5 44 98580.0 45 110384.5 46 122189.0 47 132037.5 48 141886.0 49 148016.5 50 154147.0 51 148655.0 52 143163.0 53 142188.0 54 141213.0 55 143877.0 56 146541.0 57 141966.0 58 137391.0 59 127219.0 60 117047.0 61 102542.5 62 88038.0 63 76328.0 64 64618.0 65 55044.5 66 45471.0 67 39167.0 68 32863.0 69 30162.0 70 27461.0 71 20996.0 72 14531.0 73 13339.0 74 12147.0 75 8560.5 76 4974.0 77 4552.5 78 4131.0 79 3626.0 80 3121.0 81 2477.0 82 1833.0 83 1615.0 84 1397.0 85 1163.0 86 929.0 87 696.0 88 463.0 89 288.0 90 113.0 91 75.0 92 37.0 93 26.5 94 16.0 95 13.0 96 10.0 97 7.0 98 4.0 99 4.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014931537312958668 2 0.003547563829674577 3 5.294871387573996E-4 4 1.0589742775147993E-4 5 0.0 6 4.235897110059197E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.5884614162721988E-4 47 5.2948713875739963E-5 48 0.0 49 0.0 50 1.0589742775147993E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1888620.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.323187884892185 #Duplication Level Percentage of deduplicated Percentage of total 1 79.23823633162577 40.66758890915519 2 12.120034578569909 12.44077623694667 3 3.47411857592139 5.349085212192227 4 1.5633112706439263 3.20936472263311 5 0.8410716939853 2.1583240287536047 6 0.5529304829501827 1.7026893038241837 7 0.3779987423901155 1.35800703331586 8 0.27769958479465456 1.140194237277808 9 0.21687003207612404 1.0017415262560958 >10 1.153303939775453 10.71462857424864 >50 0.08738379154014424 3.147212197989587 >100 0.08005706110245302 8.914576768137024 >500 0.011805891873168948 4.2080866669160555 >1k 0.005178022751389889 3.98772458235397 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2671 0.14142601476210143 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2619 0.13867268164056296 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2307 0.12215268291133209 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2274 0.12040537535343265 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2151 0.11389268354671665 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 2117 0.1120924272749415 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 2104 0.11140409399455688 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 1984 0.10505024832946808 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 1935 0.1024557613495568 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 1896 0.10039076150840295 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0589742775147991E-4 2 0.0 0.0 0.0 0.0 1.0589742775147991E-4 3 0.0 0.0 0.0 0.0 1.0589742775147991E-4 4 0.0 0.0 0.0 0.0 1.0589742775147991E-4 5 0.0 0.0 0.0 0.0 2.1179485550295983E-4 6 0.0 0.0 0.0 0.0 2.647435693786998E-4 7 0.0 0.0 0.0 0.0 2.647435693786998E-4 8 0.0 0.0 0.0 5.294871387573996E-5 2.647435693786998E-4 9 0.0 0.0 0.0 5.294871387573996E-5 2.647435693786998E-4 10 0.0 0.0 0.0 1.0589742775147991E-4 2.647435693786998E-4 11 0.0 0.0 0.0 1.5884614162721988E-4 2.647435693786998E-4 12 0.0 0.0 0.0 1.5884614162721988E-4 4.765384248816596E-4 13 0.0 0.0 0.0 1.5884614162721988E-4 5.824358526331395E-4 14 0.0 0.0 0.0 1.5884614162721988E-4 6.353845665088795E-4 15 0.0 0.0 0.0 1.5884614162721988E-4 0.0010060255636390593 16 0.0 0.0 0.0 2.1179485550295983E-4 0.0010589742775147992 17 0.0 0.0 0.0 2.1179485550295983E-4 0.0010589742775147992 18 0.0 0.0 0.0 3.1769228325443977E-4 0.0010589742775147992 19 0.0 0.0 0.0 3.706409971301797E-4 0.0010589742775147992 20 0.0 0.0 0.0 4.2358971100591965E-4 0.001270769133017759 21 0.0 0.0 0.0 5.294871387573996E-4 0.001376666560769239 22 0.0 0.0 0.0 7.942307081360994E-4 0.001376666560769239 23 0.0 0.0 0.0 0.001270769133017759 0.001376666560769239 24 0.0 0.0 0.0 0.0018532049856508986 0.001376666560769239 25 0.0 0.0 0.0 0.002223845982781078 0.001376666560769239 26 0.0 0.0 0.0 0.0030710254047929177 0.001376666560769239 27 0.0 0.0 0.0 0.003865256112929017 0.0014296152746449788 28 0.0 0.0 0.0 0.007253973800976374 0.0014296152746449788 29 0.0 0.0 0.0 0.014560896315828489 0.0014296152746449788 30 0.0 0.0 0.0 0.029439484914911416 0.0014296152746449788 31 0.0 0.0 0.0 0.06295602079825481 0.0014825639885207187 32 0.0 0.0 0.0 0.09684319767872838 0.0015355127023964589 33 0.0 0.0 0.0 0.13380139996399487 0.0015355127023964589 34 0.0 0.0 0.0 0.17721934534210165 0.0015355127023964589 35 0.0 0.0 0.0 0.22587921339390665 0.0015355127023964589 36 0.0 0.0 0.0 0.29751882326778284 0.0015355127023964589 37 0.0 0.0 0.0 0.40886996854846397 0.0015355127023964589 38 0.0 0.0 0.0 0.5500841884550625 0.0016414101301479387 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGTG 255 0.0 19.843533 44 CGCAATA 775 0.0 19.303099 36 GTATCAA 2530 0.0 19.046883 1 TAGCGGC 780 0.0 18.89731 30 CTAGCGG 785 0.0 18.776947 29 TCTAGCG 780 0.0 18.615261 28 TATACCG 95 1.5979766E-5 18.526194 5 ATAGCAC 230 0.0 18.173792 3 CGTCGTA 535 0.0 18.093338 10 ATACGAA 815 0.0 18.085772 40 ATTACAC 235 0.0 17.787115 3 TTAGCTA 75 0.0012912925 17.599882 4 ATACCGA 75 0.0012912925 17.599882 6 CAATACG 885 0.0 17.15243 38 CGAATGC 860 0.0 17.139875 43 GCAATAC 865 0.0 17.04035 37 AATACGA 865 0.0 17.04035 39 TACGAAT 880 0.0 16.750332 41 CGGTCCA 895 0.0 16.714973 10 ACCGTCG 605 0.0 16.36353 8 >>END_MODULE