##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062516_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1670526 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28847081697621 32.0 32.0 32.0 32.0 32.0 2 31.40955483482448 32.0 32.0 32.0 32.0 32.0 3 31.498640547947172 32.0 32.0 32.0 32.0 32.0 4 31.603303989282416 32.0 32.0 32.0 32.0 32.0 5 31.534085671219724 32.0 32.0 32.0 32.0 32.0 6 35.1333346502838 36.0 36.0 36.0 36.0 36.0 7 35.14800248544471 36.0 36.0 36.0 36.0 36.0 8 35.08853259392551 36.0 36.0 36.0 36.0 36.0 9 35.22456459821637 36.0 36.0 36.0 36.0 36.0 10 35.09912686183873 36.0 36.0 36.0 36.0 36.0 11 35.228808770411234 36.0 36.0 36.0 36.0 36.0 12 35.12677084942108 36.0 36.0 36.0 36.0 36.0 13 35.18066944184047 36.0 36.0 36.0 36.0 36.0 14 35.13943153234371 36.0 36.0 36.0 36.0 36.0 15 35.09862342759107 36.0 36.0 36.0 36.0 36.0 16 35.11629211398087 36.0 36.0 36.0 36.0 36.0 17 35.084899606471254 36.0 36.0 36.0 36.0 36.0 18 35.095830295368046 36.0 36.0 36.0 36.0 36.0 19 35.07616283733387 36.0 36.0 36.0 36.0 36.0 20 35.07260108492774 36.0 36.0 36.0 36.0 36.0 21 35.06215287879387 36.0 36.0 36.0 36.0 36.0 22 35.044333940327775 36.0 36.0 36.0 36.0 36.0 23 35.0019532769918 36.0 36.0 36.0 36.0 36.0 24 34.974272175350755 36.0 36.0 36.0 36.0 36.0 25 34.94239778369208 36.0 36.0 36.0 32.0 36.0 26 34.89521863173635 36.0 36.0 36.0 32.0 36.0 27 34.881555270615365 36.0 36.0 36.0 32.0 36.0 28 34.85910844847671 36.0 36.0 36.0 32.0 36.0 29 34.83455031528992 36.0 36.0 36.0 32.0 36.0 30 34.82206921652222 36.0 36.0 36.0 32.0 36.0 31 34.81812794293534 36.0 36.0 36.0 32.0 36.0 32 34.78266905154425 36.0 36.0 36.0 32.0 36.0 33 34.75793492588562 36.0 36.0 36.0 32.0 36.0 34 34.74050029751108 36.0 36.0 36.0 32.0 36.0 35 34.704303913857075 36.0 36.0 36.0 32.0 36.0 36 34.68248503764683 36.0 36.0 36.0 32.0 36.0 37 34.66202262042015 36.0 36.0 36.0 32.0 36.0 38 34.61937377807948 36.0 36.0 36.0 32.0 36.0 39 34.58976873152528 36.0 36.0 36.0 32.0 36.0 40 34.563274082534484 36.0 36.0 36.0 32.0 36.0 41 34.53717751175378 36.0 36.0 36.0 32.0 36.0 42 34.48171114966184 36.0 36.0 36.0 32.0 36.0 43 34.49166190768656 36.0 36.0 36.0 32.0 36.0 44 34.462145455982125 36.0 36.0 36.0 32.0 36.0 45 34.38553365826093 36.0 36.0 36.0 32.0 36.0 46 34.42301825891965 36.0 36.0 36.0 32.0 36.0 47 34.374361129368836 36.0 36.0 36.0 32.0 36.0 48 34.35248837791211 36.0 36.0 36.0 32.0 36.0 49 34.34908046926537 36.0 36.0 36.0 32.0 36.0 50 33.824971895079756 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 10.0 21 33.0 22 158.0 23 434.0 24 1080.0 25 2652.0 26 5688.0 27 10547.0 28 17959.0 29 26858.0 30 38147.0 31 54883.0 32 81528.0 33 129397.0 34 284723.0 35 1016427.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.867647701548904 17.434353703008544 11.296988463590171 26.40101013185238 2 16.322496487458714 20.087366046012946 36.286302495805 27.303834970723333 3 18.781558457262477 23.622771714762727 28.519297388643356 29.07637243933144 4 12.427896875471408 15.304419451621168 35.549444365959424 36.718239306948 5 14.428629066533535 36.61170194298084 33.41558287629166 15.544086114193972 6 35.290927375906904 34.88141417043795 16.33724828197208 13.490410171683068 7 30.576435551697816 30.226844854162614 20.550186318672274 18.64653327546729 8 28.600632375670898 32.73729352311786 19.241843586989965 19.42023051422127 9 27.193590521787748 13.963745550802562 18.267479823720194 40.5751841036895 10 15.661115121823904 26.691952115680927 31.652126336255765 25.994806426239396 11 38.223110565175276 20.761245260474844 21.502089760949545 19.513554413400332 12 24.257090281743597 23.61244302692685 28.68324108693908 23.44722560439047 13 29.83365718342606 18.933737038513616 25.206192540553097 26.026413237507228 14 23.61806999711468 19.231846735698817 24.862767774940348 32.28731549224616 15 25.62396514630721 26.702128551127007 22.228028776564987 25.445877526000793 16 26.279686757344695 25.49071370334853 23.600171443006573 24.629428096300206 17 24.417339209326883 25.657307937739372 25.162793036444807 24.76255981648894 18 25.422112556164944 24.323177250758143 26.25981277753235 23.994897415544564 19 25.498016792315713 25.39840744771407 25.000448960387327 24.103126799582885 20 25.494425109217094 24.047335988784372 25.378054576821913 25.080184325176617 21 26.71463958058719 24.318986953809755 24.119768264606478 24.84660520099657 22 25.491791208278116 24.465168455923465 24.822540924235838 25.220499411562585 23 24.362566042072974 24.01088040533341 25.279163568839998 26.347389983753622 24 24.64056231390592 25.232052658863136 24.886592606161173 25.24079242106977 25 25.329866161915472 24.216923292424063 24.85606329982293 25.597147245837537 26 24.64565053162896 25.002424386091565 25.420196991845685 24.93172809043379 27 25.780921697716767 24.67013383808453 24.657802392779278 24.89114207141942 28 24.719878649000375 24.25721000451355 25.540398652879393 25.482512693606687 29 24.596863502872747 24.74819308409447 25.586671503466572 25.06827190956621 30 24.84385157728763 24.76052452939972 25.708249976354754 24.687373916957892 31 24.99859325745304 24.700723005807752 24.628051284445736 25.67263245229347 32 24.832058884447175 24.787102984329486 24.667080907450707 25.71375722377263 33 24.400997051228178 24.379686398176386 25.28431164794801 25.935004902647428 34 25.071025533275147 24.6099731461827 25.639529106401216 24.679472214140937 35 25.946857456872863 24.339279963316944 25.290956261680453 24.42290631812974 36 24.684201263554115 25.13453846273569 24.960042525527886 25.221217748182305 37 25.920279001943104 24.6691760559249 24.859295814611684 24.551249127520315 38 24.77429264794442 24.466365683623003 25.13986612599864 25.61947554243394 39 25.220379688792633 24.3993807938338 24.98350818843885 25.39673132893472 40 25.687897105462593 24.524610811205573 25.00781191073949 24.779680172592343 41 24.258107925288204 24.946753298063005 25.790798826237964 25.00433995041083 42 25.907887695252874 25.039538444777275 25.071803731279847 23.980770128690004 43 25.08317739442547 23.778797815777786 25.222115668956963 25.915909120839782 44 24.721435045009777 24.575313404281047 25.325316696657218 25.377934854051958 45 24.87701478456486 24.809491142310865 25.162194422595043 25.151299650529236 46 24.469777782566688 24.51563160345903 25.565540434569712 25.44905017940457 47 24.868828661648283 24.20813816015923 25.91077655228147 25.012256625911018 48 25.409122635624946 25.402537883277482 24.56567572129976 24.62266375979781 49 24.389802972237487 25.0134987423123 25.355127666375743 25.241570619074473 50 24.31018733021815 25.616063443490255 24.651816254281584 25.421932972010016 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 22.0 1 19.0 2 16.0 3 83.5 4 151.0 5 189.0 6 227.0 7 221.0 8 215.0 9 284.5 10 354.0 11 564.0 12 774.0 13 1394.0 14 2014.0 15 2694.0 16 3374.0 17 3910.0 18 4446.0 19 4724.5 20 5003.0 21 5870.0 22 6737.0 23 7347.5 24 7958.0 25 9359.5 26 10761.0 27 13223.5 28 15686.0 29 17917.5 30 20149.0 31 22235.0 32 24321.0 33 27760.0 34 31199.0 35 36081.5 36 40964.0 37 49237.5 38 57511.0 39 63174.0 40 68837.0 41 75718.5 42 82600.0 43 86289.5 44 89979.0 45 101158.5 46 112338.0 47 121723.5 48 131109.0 49 133363.5 50 135618.0 51 128404.5 52 121191.0 53 118673.0 54 116155.0 55 117586.5 56 119018.0 57 115381.5 58 111745.0 59 103353.5 60 94962.0 61 83464.0 62 71966.0 63 62590.5 64 53215.0 65 45626.5 66 38038.0 67 33405.0 68 28772.0 69 26105.5 70 23439.0 71 18302.0 72 13165.0 73 11874.0 74 10583.0 75 7767.5 76 4952.0 77 4482.5 78 4013.0 79 3385.5 80 2758.0 81 2228.5 82 1699.0 83 1441.0 84 1183.0 85 975.5 86 768.0 87 584.5 88 401.0 89 244.0 90 87.0 91 58.0 92 29.0 93 18.0 94 7.0 95 7.0 96 7.0 97 6.5 98 6.0 99 5.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014905484859259896 2 0.004968494953086633 3 8.979207746542106E-4 4 1.1972276995389475E-4 5 0.0 6 3.591683098616843E-4 7 5.9861384976947376E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 5.9861384976947376E-5 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1670526.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.20201045572385 #Duplication Level Percentage of deduplicated Percentage of total 1 79.12339823214823 43.67770656503449 2 12.650087784431335 13.966205562840065 3 3.684679037283322 6.102050722263014 4 1.5023439007529413 3.3172961486982726 5 0.7838810247346952 2.1635904261724086 6 0.4829762527860072 1.5996756093695699 7 0.31203199937411064 1.2057355584379053 8 0.22994730478616202 1.0154842818456988 9 0.17372770747010224 0.8631106851792167 >10 0.8972629988882685 8.879367160209494 >50 0.07541093557511674 2.8762538479617645 >100 0.07170253747772384 8.440799740664616 >500 0.00971282871290767 3.6510006296474664 >1k 0.0028374555790516786 2.2417230616759927 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 2144 0.12834280939057519 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 2003 0.1199023541088256 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1960 0.11732831455481686 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1836 0.10990550281767539 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1818 0.10882799788809033 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1783 0.10673284941389717 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.986138497694738E-5 2 0.0 0.0 0.0 0.0 5.986138497694738E-5 3 0.0 0.0 0.0 0.0 5.986138497694738E-5 4 0.0 0.0 0.0 0.0 5.986138497694738E-5 5 0.0 0.0 0.0 0.0 5.986138497694738E-5 6 0.0 0.0 0.0 0.0 5.986138497694738E-5 7 0.0 0.0 0.0 0.0 5.986138497694738E-5 8 0.0 0.0 0.0 0.0 5.986138497694738E-5 9 0.0 0.0 0.0 5.986138497694738E-5 1.1972276995389477E-4 10 0.0 0.0 0.0 1.1972276995389477E-4 1.1972276995389477E-4 11 0.0 0.0 0.0 1.7958415493084213E-4 1.1972276995389477E-4 12 0.0 0.0 0.0 2.3944553990778953E-4 1.1972276995389477E-4 13 0.0 0.0 0.0 2.3944553990778953E-4 1.1972276995389477E-4 14 0.0 0.0 0.0 2.3944553990778953E-4 1.7958415493084213E-4 15 0.0 0.0 0.0 2.3944553990778953E-4 2.3944553990778953E-4 16 0.0 0.0 0.0 2.3944553990778953E-4 2.993069248847369E-4 17 0.0 0.0 0.0 2.3944553990778953E-4 2.993069248847369E-4 18 0.0 0.0 0.0 2.3944553990778953E-4 2.993069248847369E-4 19 0.0 0.0 0.0 4.190296948386317E-4 2.993069248847369E-4 20 0.0 0.0 0.0 4.7889107981557907E-4 2.993069248847369E-4 21 0.0 0.0 0.0 9.577821596311581E-4 3.5916830986168426E-4 22 0.0 0.0 0.0 0.001436673239446737 3.5916830986168426E-4 23 0.0 0.0 0.0 0.0022747326291240005 4.7889107981557907E-4 24 0.0 0.0 0.0 0.003591683098616843 4.7889107981557907E-4 25 0.0 0.0 0.0 0.004190296948386317 4.7889107981557907E-4 26 0.0 0.0 0.0 0.0055671088028561065 5.986138497694738E-4 27 0.0 0.0 0.0 0.007243227582210633 5.986138497694738E-4 28 0.0 0.0 0.0 0.012630752230135897 5.986138497694738E-4 29 0.0 0.0 0.0 0.023585385680917267 5.986138497694738E-4 30 0.0 0.0 0.0 0.039867682394646956 5.986138497694738E-4 31 0.0 0.0 0.0 0.0799748103292017 5.986138497694738E-4 32 0.0 0.0 0.0 0.12834280939057519 6.584752347464211E-4 33 0.0 0.0 0.0 0.175214273827525 6.584752347464211E-4 34 0.0 0.0 0.0 0.23010716385138574 6.584752347464211E-4 35 0.0 0.0 0.0 0.2951764893213275 6.584752347464211E-4 36 0.0 0.0 0.0 0.3907152597445355 6.584752347464211E-4 37 0.0 0.0 0.0 0.5296535342760305 6.584752347464211E-4 38 0.0 0.0 0.0 0.7119913129158122 6.584752347464211E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCAATA 570 0.0 18.526154 36 ATACGAA 570 0.0 18.140192 40 TAGGACG 170 1.2732926E-10 18.117487 4 GTATTAG 525 0.0 17.185429 1 CGAGCCG 725 0.0 16.992952 15 TTAACGG 170 2.4701876E-9 16.823381 35 TACGAAT 630 0.0 16.761757 41 ACCGTCG 410 0.0 16.633999 8 CGCGGGA 365 0.0 16.273829 44 TAGCGGC 640 0.0 15.81236 30 CGAATGC 655 0.0 15.78612 43 CAATACG 655 0.0 15.78612 38 GCAATAC 670 0.0 15.761055 37 CATGGGT 1020 0.0 15.744959 4 CGTCGTA 425 0.0 15.529274 10 GTGTATA 400 0.0 15.404013 1 GTTATAG 445 0.0 15.329836 1 AATACGA 675 0.0 15.318383 39 TTGATTA 575 0.0 15.304213 36 GGCGTTA 475 0.0 15.284075 42 >>END_MODULE