##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062514_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1603966 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28123414087331 32.0 32.0 32.0 32.0 32.0 2 31.39572596925371 32.0 32.0 32.0 32.0 32.0 3 31.47766162125631 32.0 32.0 32.0 32.0 32.0 4 31.577521593350482 32.0 32.0 32.0 32.0 32.0 5 31.51324279941096 32.0 32.0 32.0 32.0 32.0 6 35.09555003036224 36.0 36.0 36.0 36.0 36.0 7 35.10598666056512 36.0 36.0 36.0 36.0 36.0 8 35.047131921748964 36.0 36.0 36.0 36.0 36.0 9 35.18128563822425 36.0 36.0 36.0 36.0 36.0 10 35.05341260350905 36.0 36.0 36.0 36.0 36.0 11 35.18577949906669 36.0 36.0 36.0 36.0 36.0 12 35.08442510626784 36.0 36.0 36.0 36.0 36.0 13 35.133389984575736 36.0 36.0 36.0 36.0 36.0 14 35.10147596644817 36.0 36.0 36.0 36.0 36.0 15 35.060238184599925 36.0 36.0 36.0 36.0 36.0 16 35.06618344777882 36.0 36.0 36.0 36.0 36.0 17 35.03861303793222 36.0 36.0 36.0 36.0 36.0 18 35.050165651890374 36.0 36.0 36.0 36.0 36.0 19 35.035470203233736 36.0 36.0 36.0 36.0 36.0 20 35.01871174326638 36.0 36.0 36.0 36.0 36.0 21 35.02006276941032 36.0 36.0 36.0 36.0 36.0 22 35.00934184390442 36.0 36.0 36.0 36.0 36.0 23 34.96658033898474 36.0 36.0 36.0 32.0 36.0 24 34.93632907430706 36.0 36.0 36.0 32.0 36.0 25 34.91568836247152 36.0 36.0 36.0 32.0 36.0 26 34.8752966085316 36.0 36.0 36.0 32.0 36.0 27 34.85753438663912 36.0 36.0 36.0 32.0 36.0 28 34.839871294029926 36.0 36.0 36.0 32.0 36.0 29 34.81239939001201 36.0 36.0 36.0 32.0 36.0 30 34.799543755915025 36.0 36.0 36.0 32.0 36.0 31 34.800577443661524 36.0 36.0 36.0 32.0 36.0 32 34.763468801707766 36.0 36.0 36.0 32.0 36.0 33 34.742684071856885 36.0 36.0 36.0 32.0 36.0 34 34.72246419188437 36.0 36.0 36.0 32.0 36.0 35 34.69356021262296 36.0 36.0 36.0 32.0 36.0 36 34.66979287590884 36.0 36.0 36.0 32.0 36.0 37 34.65551514184216 36.0 36.0 36.0 32.0 36.0 38 34.61332409789235 36.0 36.0 36.0 32.0 36.0 39 34.60066173472505 36.0 36.0 36.0 32.0 36.0 40 34.58598997734366 36.0 36.0 36.0 32.0 36.0 41 34.55412084794815 36.0 36.0 36.0 32.0 36.0 42 34.52360461506042 36.0 36.0 36.0 32.0 36.0 43 34.5166138184974 36.0 36.0 36.0 32.0 36.0 44 34.47457240365444 36.0 36.0 36.0 32.0 36.0 45 34.428755971136546 36.0 36.0 36.0 32.0 36.0 46 34.43292750594464 36.0 36.0 36.0 32.0 36.0 47 34.40208395938567 36.0 36.0 36.0 32.0 36.0 48 34.37199105217941 36.0 36.0 36.0 32.0 36.0 49 34.35806993415073 36.0 36.0 36.0 32.0 36.0 50 33.83621036854896 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 6.0 21 37.0 22 118.0 23 397.0 24 1033.0 25 2506.0 26 5267.0 27 9903.0 28 16944.0 29 25946.0 30 37596.0 31 54210.0 32 79658.0 33 129345.0 34 280941.0 35 960056.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.3159922928709 17.99982540484252 11.356292596541769 26.327889705744806 2 16.420849180123447 20.63912962154748 36.336492300018705 26.60352889831037 3 18.706735903767992 24.33238546918652 28.38561133496721 28.575267292078276 4 12.302380474399083 15.549456783996668 36.1772631090684 35.970899632535854 5 14.42918018784699 36.61463934686854 33.277097692281316 15.679082773003152 6 34.26336425885667 35.5237440311828 16.651215335036202 13.561676374924328 7 30.122895373093943 30.488987921190347 20.90250042706641 18.485616278649296 8 28.327052024202526 32.38817555245907 19.671875633196485 19.612896790141928 9 27.572529592273153 14.001917746386145 18.739736378451912 39.685816282888794 10 16.06012845658823 26.398315176256855 31.23582420076236 26.305732166392552 11 37.926614404544736 21.193840767198306 21.908257406952515 18.971287421304442 12 24.89847041645521 23.796265008111146 28.4065248265861 22.898739748847543 13 29.326743833722162 19.38401437436953 25.51456826391582 25.774673527992487 14 23.591086095341176 19.839572659270832 24.849030465733062 31.72031077965493 15 25.370238521265414 27.06559864735287 22.35683300020075 25.207329831180957 16 26.022621427137484 25.74992237990082 23.705677053004866 24.52177913995683 17 24.052754235438904 25.811706731938205 25.184012628696617 24.95152640392627 18 25.072975362320648 24.39029256231117 26.47500009351819 24.06173198184999 19 25.384328595493923 25.093050600823208 25.420488962983008 24.102131840699865 20 25.638511040757724 24.140162572024593 25.188002738212656 25.03332364900503 21 26.72350910181388 24.25749672998056 24.34976801253892 24.66922615566664 22 25.685519518493532 24.484558899627547 24.97116522420051 24.858756357678406 23 24.19066239558694 24.097206549266005 25.641316586511188 26.070814468635866 24 24.614985604433013 25.277219093172796 25.27004936513617 24.83774593725802 25 24.86312053996157 24.526517395007126 25.30009987742882 25.31026218760248 26 24.29714844329618 25.331272608022864 25.780346964960604 24.591231983720352 27 25.443369747239032 24.819977480819418 24.919667873259158 24.81698489868239 28 24.31497924519597 24.491853318586553 25.842754771609872 25.350412664607603 29 24.34559086663932 24.932822765569842 25.738388469581025 24.983197898209813 30 24.44883495036678 25.024408248055135 26.072123723320818 24.45463307825727 31 24.79298189612498 24.88974205188888 24.90308398058313 25.414192071403008 32 24.612928204213805 24.883320469386508 24.823344135723573 25.680407190676114 33 24.137606408115882 24.409370273434725 25.653785678748804 25.79923763970059 34 24.985816407579712 24.732132726005414 25.843565262605317 24.438485603809557 35 25.760645799225166 24.436490549051538 25.57890877986192 24.223954871861373 36 24.380816052210584 25.13226589591051 25.211132904313434 25.275785147565472 37 25.59056738110409 24.908133962939363 24.92409440100351 24.577204254953035 38 24.450518277818855 24.671719974114165 25.55035455863778 25.327407189429202 39 25.225721742231443 24.58749125604907 24.953583804145474 25.23320319757401 40 25.479530114728117 24.74366663632521 25.374976776315705 24.401826472630965 41 24.163479774508936 25.175720682358605 26.051300339284 24.60949920384846 42 25.784711147243772 25.443806165467347 25.156144207545545 23.615338479743336 43 24.697406304123653 24.138978008262022 25.530341665596403 25.633274022017922 44 24.329630428575168 24.880327887249482 25.323666461757917 25.46637522241743 45 24.426764657106197 25.12160482204735 25.335262717538896 25.116367803307547 46 24.259818636940334 24.687758149336176 25.58921173467002 25.46321147905347 47 24.570159217838782 24.44584236822975 26.019504154078078 24.96449425985339 48 25.222542123710852 25.48701157007069 24.713117360343052 24.57732894587541 49 24.11366575101966 25.26013643680726 25.368679884735712 25.257517927437366 50 24.061919018233553 25.870249119993815 24.88587663329522 25.18195522847741 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 31.0 1 37.0 2 43.0 3 135.5 4 228.0 5 272.5 6 317.0 7 284.5 8 252.0 9 341.5 10 431.0 11 623.0 12 815.0 13 1438.5 14 2062.0 15 2747.5 16 3433.0 17 4020.0 18 4607.0 19 5047.5 20 5488.0 21 6431.5 22 7375.0 23 7896.0 24 8417.0 25 9649.0 26 10881.0 27 13477.0 28 16073.0 29 18221.5 30 20370.0 31 22738.5 32 25107.0 33 29321.0 34 33535.0 35 38780.5 36 44026.0 37 52697.0 38 61368.0 39 65929.5 40 70491.0 41 77279.5 42 84068.0 43 85254.0 44 86440.0 45 96763.0 46 107086.0 47 114549.0 48 122012.0 49 124818.5 50 127625.0 51 119508.0 52 111391.0 53 109337.0 54 107283.0 55 108777.5 56 110272.0 57 108042.5 58 105813.0 59 96456.0 60 87099.0 61 76601.0 62 66103.0 63 57475.0 64 48847.0 65 42431.5 66 36016.0 67 31820.5 68 27625.0 69 25452.5 70 23280.0 71 17904.0 72 12528.0 73 11288.0 74 10048.0 75 7154.5 76 4261.0 77 3932.0 78 3603.0 79 3150.0 80 2697.0 81 2157.0 82 1617.0 83 1510.5 84 1404.0 85 1147.5 86 891.0 87 654.0 88 417.0 89 270.0 90 123.0 91 78.5 92 34.0 93 27.0 94 20.0 95 13.5 96 7.0 97 5.5 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015960438064148492 2 0.004114800438413283 3 5.611091506927204E-4 4 0.0 5 6.234546118808005E-5 6 3.1172730594040027E-4 7 0.0 8 6.234546118808005E-5 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 6.234546118808005E-5 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1603966.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.830321962320646 #Duplication Level Percentage of deduplicated Percentage of total 1 78.65759793856697 41.55506223877262 2 13.106261945217264 13.848160765766782 3 3.82570308797999 6.063393776106815 4 1.4733799138068775 3.1135654087693436 5 0.7653935766184617 2.0217994540322737 6 0.4463455247712026 1.4148346668062162 7 0.2963915726946578 1.0960923548664134 8 0.20974928519082162 0.8864897814398177 9 0.15976899069500577 0.759658249621095 >10 0.85954111890415 8.384903975838728 >50 0.09363827585538792 3.496179898792994 >100 0.0905965993986619 10.259779480850224 >500 0.011842553258043202 4.26947019627842 >1k 0.0037896170425738246 2.8306097520585065 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2149 0.13398039609318402 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1991 0.12412981322546736 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1886 0.11758353980071898 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1885 0.1175211943395309 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1849 0.11527675773676 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1832 0.11421688489656263 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1730 0.10785764785537849 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 1691 0.10542617486904336 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 1617 0.10081261074112544 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 2.493818447523202E-4 0.0 10 0.0 0.0 0.0 2.493818447523202E-4 0.0 11 0.0 0.0 0.0 3.117273059404002E-4 0.0 12 0.0 0.0 0.0 3.117273059404002E-4 0.0 13 0.0 0.0 0.0 3.740727671284803E-4 6.234546118808005E-5 14 0.0 6.234546118808005E-5 0.0 3.740727671284803E-4 6.234546118808005E-5 15 0.0 6.234546118808005E-5 0.0 3.740727671284803E-4 1.8703638356424015E-4 16 0.0 6.234546118808005E-5 0.0 3.740727671284803E-4 1.8703638356424015E-4 17 0.0 6.234546118808005E-5 0.0 4.364182283165603E-4 1.8703638356424015E-4 18 0.0 6.234546118808005E-5 0.0 4.364182283165603E-4 1.8703638356424015E-4 19 0.0 6.234546118808005E-5 0.0 5.611091506927204E-4 1.8703638356424015E-4 20 0.0 6.234546118808005E-5 0.0 6.858000730688806E-4 1.8703638356424015E-4 21 0.0 6.234546118808005E-5 0.0 9.351819178212006E-4 1.8703638356424015E-4 22 0.0 6.234546118808005E-5 0.0 0.0015586365297020012 1.8703638356424015E-4 23 0.0 6.234546118808005E-5 0.0 0.0024314729863351217 2.493818447523202E-4 24 0.0 6.234546118808005E-5 0.0 0.004239491360789443 2.493818447523202E-4 25 0.0 6.234546118808005E-5 0.0 0.0056110915069272045 3.117273059404002E-4 26 0.0 6.234546118808005E-5 0.0 0.007045037114253045 4.987636895046404E-4 27 0.0 6.234546118808005E-5 0.0 0.009476510100588167 4.987636895046404E-4 28 0.0 6.234546118808005E-5 0.0 0.015960438064148492 4.987636895046404E-4 29 0.0 6.234546118808005E-5 0.0 0.0281178029958241 5.611091506927204E-4 30 0.0 6.234546118808005E-5 0.0 0.052557223781551476 5.611091506927204E-4 31 0.0 6.234546118808005E-5 0.0 0.10305704734389631 6.234546118808004E-4 32 0.0 6.234546118808005E-5 0.0 0.1577963622670306 6.234546118808004E-4 33 0.0 6.234546118808005E-5 0.0 0.21852084146422057 6.234546118808004E-4 34 0.0 6.234546118808005E-5 0.0 0.28311073925507146 6.234546118808004E-4 35 0.0 6.234546118808005E-5 0.0 0.3568030743793821 6.858000730688806E-4 36 0.0 6.234546118808005E-5 0.0 0.46877552267317385 8.104909954450406E-4 37 0.0 6.234546118808005E-5 0.0 0.6211478298168415 8.104909954450406E-4 38 0.0 6.234546118808005E-5 0.0 0.8174113416369175 9.351819178212006E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCATT 45 0.0013984356 24.444376 31 TAGGACG 375 0.0 21.11994 4 GTTCGGG 170 0.0 20.705824 11 ATCGATT 70 8.125057E-4 18.85709 29 GTAATCG 60 0.007413253 18.33328 14 CGGATCG 60 0.007413253 18.33328 26 CGCAATA 615 0.0 17.88613 36 TATACTG 160 1.1023076E-9 17.87495 5 TAGCGGC 630 0.0 17.809475 30 GACGGAT 165 1.6607373E-9 17.333284 26 TGTTCGG 205 5.456968E-12 17.170683 10 CTAGCGG 655 0.0 17.129723 29 GTAGGAC 555 0.0 17.044996 3 TAAACGC 375 0.0 17.013285 28 GTATCAA 4505 0.0 16.75232 1 TAAGAGG 855 0.0 16.7251 4 ACTATAC 95 3.3472397E-4 16.21048 3 CGATTTT 95 3.3472397E-4 16.21048 31 TCGGACG 165 3.1124728E-8 15.999954 23 ATACGAA 705 0.0 15.914848 40 >>END_MODULE