##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062499_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1946332 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.24862870260572 32.0 32.0 32.0 32.0 32.0 2 31.346568827928635 32.0 32.0 32.0 32.0 32.0 3 31.451488749093166 32.0 32.0 32.0 32.0 32.0 4 31.57089386600025 32.0 32.0 32.0 32.0 32.0 5 31.48398115018404 32.0 32.0 32.0 32.0 32.0 6 35.07200159068442 36.0 36.0 36.0 36.0 36.0 7 35.09035251950849 36.0 36.0 36.0 36.0 36.0 8 35.02280854448265 36.0 36.0 36.0 36.0 36.0 9 35.173204776985635 36.0 36.0 36.0 36.0 36.0 10 35.02394401366262 36.0 36.0 36.0 36.0 36.0 11 35.18252281727886 36.0 36.0 36.0 36.0 36.0 12 35.072128496063364 36.0 36.0 36.0 36.0 36.0 13 35.13152689263702 36.0 36.0 36.0 36.0 36.0 14 35.08815916297939 36.0 36.0 36.0 36.0 36.0 15 35.04690772180697 36.0 36.0 36.0 36.0 36.0 16 35.054067856871285 36.0 36.0 36.0 36.0 36.0 17 35.02536052430931 36.0 36.0 36.0 36.0 36.0 18 35.04522815223713 36.0 36.0 36.0 36.0 36.0 19 35.028332268081705 36.0 36.0 36.0 36.0 36.0 20 35.01923001831137 36.0 36.0 36.0 36.0 36.0 21 35.015687971014195 36.0 36.0 36.0 36.0 36.0 22 34.99778455063165 36.0 36.0 36.0 36.0 36.0 23 34.958102728619785 36.0 36.0 36.0 32.0 36.0 24 34.93384222219025 36.0 36.0 36.0 32.0 36.0 25 34.901942217463414 36.0 36.0 36.0 32.0 36.0 26 34.85922494209621 36.0 36.0 36.0 32.0 36.0 27 34.838092884461645 36.0 36.0 36.0 32.0 36.0 28 34.82795072988576 36.0 36.0 36.0 32.0 36.0 29 34.804759927905415 36.0 36.0 36.0 32.0 36.0 30 34.79537817802924 36.0 36.0 36.0 32.0 36.0 31 34.79044479564637 36.0 36.0 36.0 32.0 36.0 32 34.75509214255327 36.0 36.0 36.0 32.0 36.0 33 34.73074531991459 36.0 36.0 36.0 32.0 36.0 34 34.719758499577665 36.0 36.0 36.0 32.0 36.0 35 34.68931353951947 36.0 36.0 36.0 32.0 36.0 36 34.66166871838926 36.0 36.0 36.0 32.0 36.0 37 34.661957980447326 36.0 36.0 36.0 32.0 36.0 38 34.62075534903603 36.0 36.0 36.0 32.0 36.0 39 34.61302850695565 36.0 36.0 36.0 32.0 36.0 40 34.60487059761644 36.0 36.0 36.0 32.0 36.0 41 34.568579769535724 36.0 36.0 36.0 32.0 36.0 42 34.539843151117076 36.0 36.0 36.0 32.0 36.0 43 34.537521347848156 36.0 36.0 36.0 32.0 36.0 44 34.500029799643634 36.0 36.0 36.0 32.0 36.0 45 34.45669649371227 36.0 36.0 36.0 32.0 36.0 46 34.47136819412104 36.0 36.0 36.0 32.0 36.0 47 34.444030617592475 36.0 36.0 36.0 32.0 36.0 48 34.40201568899859 36.0 36.0 36.0 32.0 36.0 49 34.39538064420664 36.0 36.0 36.0 32.0 36.0 50 33.860207302762326 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 11.0 21 52.0 22 157.0 23 480.0 24 1250.0 25 2973.0 26 6120.0 27 11412.0 28 19429.0 29 30399.0 30 44436.0 31 64408.0 32 97611.0 33 162675.0 34 361131.0 35 1143786.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.44755612719166 17.81646198931077 11.168760029824194 26.567221853673377 2 16.949789135331546 20.283341691192184 35.49837843836833 27.268490735107942 3 18.75934134194719 23.72167797603787 28.427479331518285 29.091501350496657 4 12.519202807334832 15.322581473850786 35.75364917562798 36.404566543186405 5 14.788741078089451 36.25465747878573 33.12682522817279 15.829776214952023 6 34.93215929105329 35.293712660379256 16.2192420172592 13.55488603130825 7 30.637301999147116 30.19755128883591 20.411132747273072 18.7540139647439 8 28.87457021720857 31.81738778379023 19.186089526350077 20.12195247265112 9 27.68309825867324 13.56690431026156 18.245396982631945 40.50460044843326 10 16.24044613149247 25.82596391571428 30.903463540649796 27.030126412143456 11 38.427668044300766 20.814845565915785 21.52176504316838 19.23572134661507 12 24.755437407389902 23.50601027984948 28.07835456643574 23.660197746324883 13 29.704438913813263 18.6950633293806 25.27472188711895 26.325775869687185 14 23.838687335973514 19.328870922329795 24.274584192213865 32.55785754948282 15 26.045505083408177 26.336719531919528 21.796486930287333 25.821288454384966 16 26.771588814241355 25.249083917851628 22.755932698018633 25.223394569888384 17 24.59832135524669 25.296609211583636 24.462784355392607 25.64228507777707 18 25.793132929017247 24.033001563967503 25.532488804582158 24.64137670243309 19 26.16567985318024 24.615019431422798 24.606490567899 24.61281014749796 20 26.186334088942687 23.710857140508402 24.318256083751386 25.784552686797525 21 27.510928248623568 23.604040831677224 23.686246745159615 25.198784174539597 22 26.33363681016394 23.830929152888615 24.25125826426324 25.58417577268421 23 24.995838325629954 23.446308235182897 24.91270759562089 26.645145843566258 24 25.228892090352517 24.730056331602214 24.391470725446634 25.649580852598632 25 25.523548911490952 23.985373512843648 24.624062081905862 25.867015493759542 26 25.08549415002168 24.66495952386335 25.104504267514482 25.145042058600488 27 26.08599149579825 24.19864647963451 24.169257865564557 25.54610415900268 28 25.064171991212188 23.928445917757095 25.201764138903332 25.805617952127385 29 24.941685180123432 24.33356693513748 25.052457648540948 25.67229023619814 30 25.144271378161587 24.4755776506783 25.27631462669267 25.10383634446744 31 25.510858373597106 24.353964277420296 24.074001763316843 26.06117558566575 32 25.256276935281342 24.30279109627751 24.175371930379814 26.265560038061338 33 25.020859750546155 23.75571074205223 24.749426099966502 26.474003407435116 34 25.6175205463405 24.07980755595654 25.08236004957017 25.2203118481328 35 26.527951038157934 23.76742508472347 24.74757646691315 24.95704741020545 36 25.123976793270625 24.568984119872663 24.4117653103376 25.89527377651911 37 26.439887953339923 24.270011488276406 24.103904164346062 25.18619639403761 38 25.22097977117984 23.8873429610159 24.950470937126862 25.941206330677396 39 25.700034731998443 24.018615529108086 24.180612557364313 26.100737181529155 40 25.952766537260857 24.171672664273107 24.819660777298015 25.05590002116802 41 24.78004780273869 24.66598709778188 25.262185485312887 25.291779614166543 42 26.286265652519713 24.741462402097895 24.540879973200873 24.43139197218152 43 25.327385050443603 23.53149411302902 24.821921439918782 26.319199396608596 44 25.03077583885997 24.271090440890866 24.65411861902286 26.044015101226307 45 25.18337056576165 24.581982929942065 24.623599673642524 25.611046830653763 46 25.082090437947542 24.24656879695057 24.78445319367897 25.886887571422918 47 25.262660873201938 23.928715105498497 25.190782040670367 25.617841980629198 48 26.04016169903182 24.878283869350142 24.10714102218943 24.974413409428607 49 24.800303751006382 24.81936525698866 24.7487708925152 25.631560099489757 50 24.688966059729818 25.050466750002954 24.489205587333295 25.77136160293393 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7.0 1 12.0 2 17.0 3 55.5 4 94.0 5 135.0 6 176.0 7 160.5 8 145.0 9 217.0 10 289.0 11 441.0 12 593.0 13 1038.5 14 1484.0 15 2169.5 16 2855.0 17 3719.5 18 4584.0 19 5122.0 20 5660.0 21 6803.0 22 7946.0 23 8166.0 24 8386.0 25 10347.0 26 12308.0 27 15560.0 28 18812.0 29 20826.5 30 22841.0 31 24117.5 32 25394.0 33 28919.0 34 32444.0 35 38603.0 36 44762.0 37 56105.0 38 67448.0 39 73071.0 40 78694.0 41 87663.5 42 96633.0 43 97630.5 44 98628.0 45 109570.0 46 120512.0 47 129089.0 48 137666.0 49 142917.0 50 148168.0 51 142511.0 52 136854.0 53 134989.5 54 133125.0 55 136483.5 56 139842.0 57 138554.0 58 137266.0 59 125780.5 60 114295.0 61 102082.5 62 89870.0 63 79371.0 64 68872.0 65 59900.0 66 50928.0 67 45910.5 68 40893.0 69 37548.5 70 34204.0 71 27227.0 72 20250.0 73 18394.5 74 16539.0 75 12299.0 76 8059.0 77 7159.0 78 6259.0 79 5456.0 80 4653.0 81 3760.5 82 2868.0 83 2570.0 84 2272.0 85 1906.5 86 1541.0 87 1178.0 88 815.0 89 536.0 90 257.0 91 161.5 92 66.0 93 48.0 94 30.0 95 22.0 96 14.0 97 11.0 98 8.0 99 7.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.013409839636814273 2 0.0030827217555894886 3 5.651656551914062E-4 4 1.0275739185298294E-4 5 0.0 6 4.1102956741193177E-4 7 1.0275739185298294E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.5413608777947442E-4 47 5.137869592649147E-5 48 0.0 49 5.137869592649147E-5 50 5.137869592649147E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1946332.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.5771771826544 #Duplication Level Percentage of deduplicated Percentage of total 1 76.14691021389534 36.22855039158175 2 13.85996271282143 13.188358034657771 3 4.318450172617772 6.1637900705130075 4 1.8329860400951155 3.488332064117495 5 0.965080908463736 2.295791268878812 6 0.5785614164723377 1.651579141353115 7 0.38208402215757625 1.272493545459658 8 0.27756875354942556 1.056475021439164 9 0.21203384008438328 0.907917442057198 >10 1.1898598216652259 10.38522309571066 >50 0.11456197690839783 3.8551364842862132 >100 0.1004606181751408 10.261152834568845 >500 0.01583842147348463 5.149980246335351 >1k 0.005641081620693156 4.095220359041083 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2672 0.1372838755155852 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2476 0.12721365111399288 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2419 0.12428506544618287 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2347 0.12058579933947547 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2279 0.11709204801647406 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 2240 0.1150882788753409 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 2217 0.1139065688690316 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 2109 0.10835766970897051 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.137869592649147E-5 0.0 5 0.0 0.0 0.0 5.137869592649147E-5 0.0 6 0.0 0.0 0.0 5.137869592649147E-5 5.137869592649147E-5 7 0.0 0.0 0.0 5.137869592649147E-5 5.137869592649147E-5 8 0.0 0.0 0.0 5.137869592649147E-5 5.137869592649147E-5 9 0.0 0.0 0.0 1.0275739185298294E-4 5.137869592649147E-5 10 0.0 0.0 0.0 1.0275739185298294E-4 1.0275739185298294E-4 11 0.0 0.0 0.0 1.0275739185298294E-4 1.0275739185298294E-4 12 0.0 0.0 0.0 1.0275739185298294E-4 3.5965087148544033E-4 13 0.0 0.0 0.0 1.0275739185298294E-4 4.1102956741193177E-4 14 0.0 0.0 0.0 1.0275739185298294E-4 4.1102956741193177E-4 15 0.0 0.0 0.0 1.0275739185298294E-4 4.1102956741193177E-4 16 0.0 0.0 0.0 2.5689347963245735E-4 4.6240826333842326E-4 17 0.0 0.0 0.0 2.5689347963245735E-4 4.6240826333842326E-4 18 0.0 0.0 0.0 3.0827217555894884E-4 4.6240826333842326E-4 19 0.0 0.0 0.0 3.5965087148544033E-4 4.6240826333842326E-4 20 0.0 0.0 0.0 7.193017429708807E-4 5.137869592649147E-4 21 0.0 0.0 0.0 8.73437830750355E-4 5.651656551914062E-4 22 0.0 0.0 0.0 0.0011303313103828124 6.165443511178977E-4 23 0.0 0.0 0.0 0.0015927395737212356 6.165443511178977E-4 24 0.0 0.0 0.0 0.0023120413166921165 6.165443511178977E-4 25 0.0 0.0 0.0 0.002723070884104048 6.165443511178977E-4 26 0.0 0.0 0.0 0.0036478874107808944 8.220591348238635E-4 27 0.0 0.0 0.0 0.0049323548089431814 8.73437830750355E-4 28 0.0 0.0 0.0 0.009813330921959872 8.73437830750355E-4 29 0.0 0.0 0.0 0.020705614458376063 8.73437830750355E-4 30 0.0 0.0 0.0 0.04069192717378125 8.73437830750355E-4 31 0.0 0.0 0.0 0.0825141856579453 8.73437830750355E-4 32 0.0 0.0 0.0 0.1312725680921857 8.73437830750355E-4 33 0.0 0.0 0.0 0.1783354535608519 8.73437830750355E-4 34 0.0 0.0 0.0 0.2337730664655362 9.248165266768465E-4 35 0.0 0.0 0.0 0.2971229985429002 9.248165266768465E-4 36 0.0 0.0 0.0 0.38883397077168746 9.248165266768465E-4 37 0.0 0.0 0.0 0.5150200479671505 9.248165266768465E-4 38 0.0 0.0 0.0 0.6842614723490135 9.248165266768465E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAA 125 2.2902896E-8 19.359877 11 ATACGAA 790 0.0 17.544191 40 GTATCAA 3955 0.0 17.525614 1 GTCGTAC 165 1.6570993E-9 17.336786 1 GTATTAG 670 0.0 17.078028 1 CGAATGC 795 0.0 16.880396 43 ATACCGT 510 0.0 16.823421 6 TACCGTC 525 0.0 16.761797 7 ATTACAC 250 0.0 16.720324 3 ACCGTCG 530 0.0 16.603666 8 GGCGTTA 545 0.0 16.550354 42 ATAACCG 160 2.1314918E-8 16.499893 10 CGCAATA 800 0.0 16.499893 36 CGTCGTA 495 0.0 16.44434 10 TAACGGC 390 0.0 16.35887 36 TTAACGG 390 0.0 16.35887 35 CCGTCGT 525 0.0 16.342752 9 GCAATAC 835 0.0 16.335224 37 GTCCTAT 665 0.0 16.213755 1 TATTACA 285 0.0 16.211254 2 >>END_MODULE