##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062492_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1074549 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.22787048333766 32.0 32.0 32.0 32.0 32.0 2 31.40222083869605 32.0 32.0 32.0 32.0 32.0 3 31.49072215413164 32.0 32.0 32.0 32.0 32.0 4 31.603592763103403 32.0 32.0 32.0 32.0 32.0 5 31.527407312277056 32.0 32.0 32.0 32.0 32.0 6 35.13020160085766 36.0 36.0 36.0 36.0 36.0 7 35.144733278798824 36.0 36.0 36.0 36.0 36.0 8 35.08200463636372 36.0 36.0 36.0 36.0 36.0 9 35.20574771369198 36.0 36.0 36.0 36.0 36.0 10 35.08345920009232 36.0 36.0 36.0 36.0 36.0 11 35.21994436735784 36.0 36.0 36.0 36.0 36.0 12 35.110625015704265 36.0 36.0 36.0 36.0 36.0 13 35.15474399026941 36.0 36.0 36.0 36.0 36.0 14 35.114153938070764 36.0 36.0 36.0 36.0 36.0 15 35.09197533104586 36.0 36.0 36.0 36.0 36.0 16 35.090323475244034 36.0 36.0 36.0 36.0 36.0 17 35.0586795018189 36.0 36.0 36.0 36.0 36.0 18 35.07904432464225 36.0 36.0 36.0 36.0 36.0 19 35.05878931533136 36.0 36.0 36.0 36.0 36.0 20 35.03729843869382 36.0 36.0 36.0 36.0 36.0 21 35.031068848419196 36.0 36.0 36.0 36.0 36.0 22 35.027568775365296 36.0 36.0 36.0 36.0 36.0 23 34.987579905616215 36.0 36.0 36.0 36.0 36.0 24 34.959409947801355 36.0 36.0 36.0 32.0 36.0 25 34.93503041741233 36.0 36.0 36.0 32.0 36.0 26 34.89463951853289 36.0 36.0 36.0 32.0 36.0 27 34.877868761685136 36.0 36.0 36.0 32.0 36.0 28 34.86346737096214 36.0 36.0 36.0 32.0 36.0 29 34.8410635531744 36.0 36.0 36.0 32.0 36.0 30 34.81221144871011 36.0 36.0 36.0 32.0 36.0 31 34.80397171278369 36.0 36.0 36.0 32.0 36.0 32 34.76892352047231 36.0 36.0 36.0 32.0 36.0 33 34.746649059279754 36.0 36.0 36.0 32.0 36.0 34 34.73035198953235 36.0 36.0 36.0 32.0 36.0 35 34.69029239243627 36.0 36.0 36.0 32.0 36.0 36 34.659511106520036 36.0 36.0 36.0 32.0 36.0 37 34.65369843534357 36.0 36.0 36.0 32.0 36.0 38 34.60836313653449 36.0 36.0 36.0 32.0 36.0 39 34.57842592566742 36.0 36.0 36.0 32.0 36.0 40 34.573869595523334 36.0 36.0 36.0 32.0 36.0 41 34.53414781457151 36.0 36.0 36.0 32.0 36.0 42 34.488682228544256 36.0 36.0 36.0 32.0 36.0 43 34.485571155898896 36.0 36.0 36.0 32.0 36.0 44 34.43582749600065 36.0 36.0 36.0 32.0 36.0 45 34.373366872985784 36.0 36.0 36.0 32.0 36.0 46 34.37980492280948 36.0 36.0 36.0 32.0 36.0 47 34.333127665653215 36.0 36.0 36.0 32.0 36.0 48 34.29184150746034 36.0 36.0 36.0 32.0 36.0 49 34.278270232441706 36.0 36.0 36.0 32.0 36.0 50 33.76807013919328 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 4.0 21 28.0 22 100.0 23 296.0 24 755.0 25 1761.0 26 3753.0 27 7018.0 28 11819.0 29 17493.0 30 25154.0 31 35432.0 32 52411.0 33 84802.0 34 186987.0 35 646736.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.06062986556068 17.41205225672662 11.300107596138453 26.227210281574255 2 16.648270444934184 19.975783995473225 35.827494937161234 27.548450622431353 3 18.997639929123423 23.457671347101655 28.12048645751128 29.424202266263645 4 12.526592626095114 14.893266551641343 34.89603981588503 37.684101006378505 5 14.837015343181188 36.36483771331042 32.63313259795505 16.165014345553345 6 35.8209024673745 34.272430233131665 16.006990878913175 13.899676420580656 7 31.1891779714094 29.901847193566788 20.103410826309457 18.805564008714352 8 29.239988125250687 31.92250888512297 18.969912028209045 19.867590961417303 9 27.495628398518818 13.620504974645176 18.41302723282047 40.470839394015535 10 16.47286442963513 25.924550671956325 30.692039171782763 26.910545726625774 11 38.53858688621924 20.62297763992149 21.3365793463118 19.501856127547466 12 24.986296576517216 23.36087046751707 27.86880821628423 23.784024739681485 13 29.903708439540683 18.49836536072343 25.335745508115497 26.26218069162039 14 23.906215537867514 19.104852361316237 24.509910669499483 32.47902143131677 15 25.714043752309106 26.63470907329494 22.04617937385824 25.60506780053771 16 26.449608161191346 25.15995082588137 23.429085132460223 24.96135588046706 17 24.444208686621085 25.497022471753265 24.707574991926844 25.351193849698806 18 25.720185864022955 23.766249840630813 26.119609250020243 24.393955045325992 19 25.853730262649727 24.6409423860615 24.970941297232606 24.534386054056167 20 25.969872011420602 23.359288408439262 25.01477363991777 25.656065940222362 21 27.30466456159747 23.63047194683537 24.12733155956592 24.93753193200124 22 26.16316240580932 23.59073434529277 24.819435874957772 25.426667373940138 23 24.44709361788062 23.451513146445624 25.579661792994084 26.521731442679673 24 25.091550036340827 24.686356787824472 24.93353025315737 25.288562922677325 25 25.211321214760794 23.962239041681674 25.013191580839962 25.813248162717567 26 24.88048474290144 24.80184710050449 25.602275931576873 24.715392225017194 27 25.811293854444983 24.121840883942937 24.802963848088826 25.263901413523254 28 24.83655933791758 23.944929454124477 25.62377332257533 25.594737885382614 29 24.544809031509963 24.370689470652337 25.687334872583754 25.39716662525394 30 24.559140625508935 24.57775308524786 25.94139494802005 24.921711341223155 31 25.217742513370727 24.575240403183102 24.458168031425277 25.748849052020894 32 25.050137313421722 24.33541885944708 24.540435103471317 26.07400872365988 33 24.544436782315184 23.99304266254959 25.284468181534763 26.17805237360046 34 25.51340143632352 24.243380246038104 25.42164200981063 24.82157630782775 35 26.005328747223256 23.951816064227877 25.484738248325577 24.558116940223293 36 24.714647726627636 24.85787060431865 24.844004321813152 25.583477347240564 37 25.975548811640977 24.501628124915662 24.773463099402633 24.74935996404073 38 24.909240993198075 24.180004820627072 25.24184564873263 25.66890853744222 39 25.60804579409594 24.091037263075023 24.59152630545466 25.70939063737438 40 25.705388958530513 24.432762023881647 25.124959401572195 24.73688961601565 41 24.331882492096685 24.872109136018924 25.842469724507676 24.953538647376714 42 26.315226201876325 24.91389410813281 24.822320806217306 23.948558883773565 43 25.14087305464897 23.621258779264604 25.20471379155348 26.033154374532945 44 24.660392406488675 24.598040666363282 25.041203332747042 25.700363594400997 45 24.911195301470663 24.71511303812111 24.856009358344757 25.51768230206347 46 24.514563784434216 24.373016028119704 25.337048380297222 25.77537180714886 47 24.915848416405396 24.184657935561805 25.64992382850852 25.249569819524286 48 25.78988952574522 25.16851255736127 24.12463275290378 24.91696516398973 49 24.453887165685327 25.106533066430657 24.86996870314895 25.569611064735064 50 24.417220619999647 25.393444133306158 24.606974647037966 25.58236059965623 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 20.0 1 22.0 2 24.0 3 96.5 4 169.0 5 190.5 6 212.0 7 216.0 8 220.0 9 288.0 10 356.0 11 522.0 12 688.0 13 1235.0 14 1782.0 15 2446.5 16 3111.0 17 3657.0 18 4203.0 19 4411.0 20 4619.0 21 4963.0 22 5307.0 23 5588.5 24 5870.0 25 6077.5 26 6285.0 27 7499.0 28 8713.0 29 9813.0 30 10913.0 31 12301.5 32 13690.0 33 15802.0 34 17914.0 35 21061.5 36 24209.0 37 29323.5 38 34438.0 39 37783.0 40 41128.0 41 45393.5 42 49659.0 43 51767.5 44 53876.0 45 61192.0 46 68508.0 47 74151.5 48 79795.0 49 82564.5 50 85334.0 51 80600.5 52 75867.0 53 75569.0 54 75271.0 55 77305.0 56 79339.0 57 77938.0 58 76537.0 59 70392.5 60 64248.0 61 57373.5 62 50499.0 63 44039.0 64 37579.0 65 32528.0 66 27477.0 67 23975.5 68 20474.0 69 18813.5 70 17153.0 71 13319.0 72 9485.0 73 8694.0 74 7903.0 75 5659.5 76 3416.0 77 3168.5 78 2921.0 79 2567.5 80 2214.0 81 1772.5 82 1331.0 83 1106.0 84 881.0 85 719.0 86 557.0 87 413.0 88 269.0 89 157.0 90 45.0 91 30.0 92 15.0 93 13.0 94 11.0 95 8.0 96 5.0 97 5.0 98 5.0 99 4.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014983030089833036 2 0.004932301830814602 3 4.653114934730757E-4 4 2.791868960838454E-4 5 0.0 6 5.583737921676908E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1074549.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.71742019329986 #Duplication Level Percentage of deduplicated Percentage of total 1 77.03625646760777 39.84116445854085 2 13.637006902453514 14.105416323062375 3 4.084250482947896 6.336806952039126 4 1.7619370601387203 3.6449135717336647 5 0.9206672906284781 2.3807268563829957 6 0.5516195332364004 1.7117003512331315 7 0.3578767868816782 1.2955924915211439 8 0.24469211370686295 1.0123875890051628 9 0.1975721919097102 0.9196131660755185 >10 1.0066479904030157 9.443831628982199 >50 0.09153873211953953 3.3073390505471894 >100 0.09657623976432378 10.495536890601345 >500 0.010650463296233577 3.746378727189903 >1k 0.0027077449058220955 1.7585919430854544 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1646 0.15318054365133651 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1559 0.145084123664905 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1443 0.13428889701632965 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1388 0.1291704705881258 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1388 0.1291704705881258 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 1369 0.12740228691292813 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 1207 0.11232619452440047 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1180 0.10981351245964587 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 1164 0.10832451568053203 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 1163 0.1082314533818374 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1135 0.10562570901838818 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 1099 0.10227546626538203 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.8612459738923028E-4 2 0.0 0.0 0.0 0.0 1.8612459738923028E-4 3 0.0 0.0 0.0 0.0 1.8612459738923028E-4 4 0.0 0.0 0.0 0.0 1.8612459738923028E-4 5 0.0 0.0 0.0 0.0 1.8612459738923028E-4 6 0.0 0.0 0.0 0.0 1.8612459738923028E-4 7 0.0 0.0 0.0 0.0 1.8612459738923028E-4 8 0.0 0.0 0.0 0.0 1.8612459738923028E-4 9 0.0 0.0 0.0 0.0 1.8612459738923028E-4 10 0.0 0.0 0.0 0.0 2.791868960838454E-4 11 0.0 0.0 0.0 0.0 2.791868960838454E-4 12 0.0 0.0 0.0 0.0 4.653114934730757E-4 13 0.0 0.0 0.0 0.0 5.583737921676908E-4 14 0.0 0.0 0.0 0.0 5.583737921676908E-4 15 0.0 0.0 0.0 0.0 7.444983895569211E-4 16 0.0 0.0 0.0 2.791868960838454E-4 7.444983895569211E-4 17 0.0 0.0 0.0 2.791868960838454E-4 7.444983895569211E-4 18 0.0 0.0 0.0 3.7224919477846057E-4 8.375606882515363E-4 19 0.0 0.0 0.0 3.7224919477846057E-4 9.306229869461514E-4 20 0.0 0.0 0.0 5.583737921676908E-4 0.0010236852856407666 21 0.0 0.0 0.0 8.375606882515363E-4 0.0012098098830299968 22 0.0 0.0 0.0 0.002047370571281533 0.0012098098830299968 23 0.0 0.0 0.0 0.0036294296490899905 0.001302872181724612 24 0.0 0.0 0.0 0.0068866101034015205 0.0013959344804192271 25 0.0 0.0 0.0 0.009492354466850744 0.0013959344804192271 26 0.0 0.0 0.0 0.011353600440743046 0.0013959344804192271 27 9.306229869461514E-5 0.0 0.0 0.014331593998970731 0.0013959344804192271 28 9.306229869461514E-5 0.0 0.0 0.022893325478875324 0.0013959344804192271 29 9.306229869461514E-5 0.0 0.0 0.03759716867262451 0.0013959344804192271 30 9.306229869461514E-5 0.0 0.0 0.06216561552800291 0.0013959344804192271 31 9.306229869461514E-5 0.0 0.0 0.11176782073223278 0.0013959344804192271 32 9.306229869461514E-5 0.0 0.0 0.1722583148837326 0.0014889967791138423 33 9.306229869461514E-5 0.0 0.0 0.2386117338529932 0.0014889967791138423 34 9.306229869461514E-5 0.0 0.0 0.30087041167969075 0.0015820590778084574 35 9.306229869461514E-5 0.0 0.0 0.38015949016750283 0.0015820590778084574 36 9.306229869461514E-5 0.0 0.0 0.49155506170495716 0.0015820590778084574 37 9.306229869461514E-5 0.0 0.0 0.6448286676549883 0.0015820590778084574 38 9.306229869461514E-5 0.0 0.0 0.8469599804196923 0.0015820590778084574 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTAC 95 2.67828E-8 23.163113 1 CGCAATA 460 0.0 21.043324 36 CTAGCGG 450 0.0 21.022066 29 TCTAGCG 440 0.0 20.999846 28 CCGGTCC 500 0.0 20.679846 9 ATACGAA 470 0.0 20.595592 40 CAATACG 475 0.0 20.378796 38 GTCCTAA 165 3.6379788E-12 20.004507 1 CTATAGC 100 1.1232787E-6 19.799854 4 TAGCGGC 495 0.0 19.55541 30 CGGTCCA 520 0.0 19.461393 10 ATAACGC 410 0.0 18.781223 3 GCGCAAT 520 0.0 18.615246 35 AATACGA 520 0.0 18.615246 39 GCAATAC 525 0.0 18.437958 37 CGAATGC 515 0.0 18.368795 43 TACGAAT 520 0.0 18.192173 41 AATAACG 415 0.0 18.024801 2 GTTATAT 110 2.7898295E-6 18.004055 1 TAGGACG 210 0.0 17.809391 4 >>END_MODULE