Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062488_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1288925 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 1566 | 0.12149659600054309 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC | 1468 | 0.11389336074635839 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 1398 | 0.10846247842194078 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATATAC | 315 | 0.0 | 21.658949 | 1 |
CGCAATA | 330 | 0.0 | 21.33309 | 36 |
CAATACG | 325 | 0.0 | 20.307459 | 38 |
TAGCGGC | 330 | 0.0 | 19.999771 | 30 |
CTAGCGG | 330 | 0.0 | 19.999771 | 29 |
GTCTTAA | 145 | 2.9467628E-10 | 19.731565 | 1 |
CCCTATA | 125 | 2.2864697E-8 | 19.36128 | 2 |
TAGGACG | 410 | 0.0 | 19.31685 | 4 |
GTAGGAC | 670 | 0.0 | 19.045298 | 3 |
TGTAGGA | 725 | 0.0 | 18.815037 | 2 |
TCTAGCG | 355 | 0.0 | 18.591337 | 28 |
GATTTCG | 225 | 0.0 | 18.577566 | 41 |
GCGCAAT | 370 | 0.0 | 18.43222 | 35 |
AAGACGG | 455 | 0.0 | 18.373417 | 5 |
TACGAAT | 360 | 0.0 | 18.333122 | 41 |
CGAATGC | 360 | 0.0 | 18.333122 | 43 |
GACGTGA | 290 | 0.0 | 18.206686 | 7 |
ATACGAA | 365 | 0.0 | 18.081984 | 40 |
ATACACT | 455 | 0.0 | 17.889906 | 4 |
AATACGA | 370 | 0.0 | 17.837633 | 39 |