##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062488_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1288925 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.245655100180382 32.0 32.0 32.0 32.0 32.0 2 31.387593537250034 32.0 32.0 32.0 32.0 32.0 3 31.503123145256705 32.0 32.0 32.0 32.0 32.0 4 31.616041274705665 32.0 32.0 32.0 32.0 32.0 5 31.545672556587853 32.0 32.0 32.0 32.0 32.0 6 35.15299261012084 36.0 36.0 36.0 36.0 36.0 7 35.17235292976705 36.0 36.0 36.0 36.0 36.0 8 35.10852221812751 36.0 36.0 36.0 36.0 36.0 9 35.24506701320868 36.0 36.0 36.0 36.0 36.0 10 35.11558546851058 36.0 36.0 36.0 36.0 36.0 11 35.25160579552728 36.0 36.0 36.0 36.0 36.0 12 35.159113990340785 36.0 36.0 36.0 36.0 36.0 13 35.20075722016409 36.0 36.0 36.0 36.0 36.0 14 35.16230890082821 36.0 36.0 36.0 36.0 36.0 15 35.12199235797273 36.0 36.0 36.0 36.0 36.0 16 35.124222123087065 36.0 36.0 36.0 36.0 36.0 17 35.111126714122236 36.0 36.0 36.0 36.0 36.0 18 35.115455903175125 36.0 36.0 36.0 36.0 36.0 19 35.104696549450125 36.0 36.0 36.0 36.0 36.0 20 35.100233915860116 36.0 36.0 36.0 36.0 36.0 21 35.08332602750354 36.0 36.0 36.0 36.0 36.0 22 35.0619904183719 36.0 36.0 36.0 36.0 36.0 23 35.010553756037005 36.0 36.0 36.0 36.0 36.0 24 34.98691855616114 36.0 36.0 36.0 36.0 36.0 25 34.96062532730764 36.0 36.0 36.0 32.0 36.0 26 34.905660918982875 36.0 36.0 36.0 32.0 36.0 27 34.881747192427795 36.0 36.0 36.0 32.0 36.0 28 34.86150629400469 36.0 36.0 36.0 32.0 36.0 29 34.83118955718913 36.0 36.0 36.0 32.0 36.0 30 34.81678452974378 36.0 36.0 36.0 32.0 36.0 31 34.81538025874275 36.0 36.0 36.0 32.0 36.0 32 34.77118218670598 36.0 36.0 36.0 32.0 36.0 33 34.746824679480966 36.0 36.0 36.0 32.0 36.0 34 34.73898093372384 36.0 36.0 36.0 32.0 36.0 35 34.69443140601664 36.0 36.0 36.0 32.0 36.0 36 34.66477878852532 36.0 36.0 36.0 32.0 36.0 37 34.635684776073084 36.0 36.0 36.0 32.0 36.0 38 34.5892988342999 36.0 36.0 36.0 32.0 36.0 39 34.545264464573194 36.0 36.0 36.0 32.0 36.0 40 34.512047636596385 36.0 36.0 36.0 32.0 36.0 41 34.50132785072832 36.0 36.0 36.0 32.0 36.0 42 34.4309009445856 36.0 36.0 36.0 32.0 36.0 43 34.439597338867664 36.0 36.0 36.0 32.0 36.0 44 34.421852318792794 36.0 36.0 36.0 32.0 36.0 45 34.33307601295653 36.0 36.0 36.0 32.0 36.0 46 34.37999728455884 36.0 36.0 36.0 32.0 36.0 47 34.32833174932599 36.0 36.0 36.0 32.0 36.0 48 34.302399286226894 36.0 36.0 36.0 32.0 36.0 49 34.311727214539246 36.0 36.0 36.0 32.0 36.0 50 33.79225478596505 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 12.0 21 29.0 22 91.0 23 314.0 24 904.0 25 2124.0 26 4569.0 27 8531.0 28 14085.0 29 20884.0 30 29717.0 31 42323.0 32 62899.0 33 98914.0 34 219574.0 35 783954.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.28243030902636 17.104347320025607 11.292711788783489 26.32051058216454 2 16.240700208631882 19.788140491731923 36.74442710802383 27.226732191612363 3 19.311606515252375 23.21272016596918 28.27163022513527 29.20404309364318 4 12.365148833791986 15.216215733935595 35.51288248077268 36.90575295149974 5 14.295633958531335 36.60406928254165 33.62709234439553 15.473204414531489 6 35.533026823966075 34.82359677311738 16.16443818943272 13.478938213483826 7 30.77062728291195 29.83923024165893 20.248051863414755 19.14209061201436 8 28.46185774967512 33.366254824757064 19.061155614174602 19.110731811393215 9 27.118024710514575 13.859534107880597 17.97777217448649 41.04466900711834 10 15.410361347634657 26.949434606358015 31.925674496188684 25.71452954981865 11 38.433190449405515 20.474193610954867 21.568438815291813 19.52417712434781 12 24.250674011288474 23.251857167794867 29.041565645790097 23.455903175126558 13 30.421785596524238 18.865100762263125 24.968403902476872 25.744709738735764 14 23.37428477219388 19.247046957736096 24.801598231084043 32.57707003898598 15 25.53267257598386 27.260391411447525 22.081036522683632 25.125899489884983 16 26.042710010279883 25.46734682002444 24.0650154198266 24.424927749869077 17 24.218786973640825 25.81950074674632 25.326066295556377 24.63564598405648 18 25.31396318637624 24.38062726690847 26.568497003316715 23.73691254339857 19 25.644781503966485 25.28960179994957 24.760401109451674 24.30521558663227 20 25.414124173245145 24.175262331012277 25.646255600597396 24.764357895145178 21 26.213705219465833 24.393195880287838 24.101402331400198 25.291696568846135 22 25.361599782764703 24.675601761157555 24.856139806427837 25.106658649649905 23 24.27775083887736 24.22794188955913 25.223112283492057 26.271194988071457 24 24.655973000756447 25.20790581298369 25.02822119207867 25.1078999941812 25 25.32404911069302 24.274026805283473 24.97453304110014 25.427391042923364 26 24.298931279942586 25.105650057218227 25.56580095816281 25.029617704676376 27 25.366177240723857 24.761875206082586 25.115115309269353 24.7568322439242 28 24.623310122776733 24.433151657388912 25.323583606493784 25.619954613340575 29 24.38031693077565 24.768702601004712 25.51715576934267 25.333824698876974 30 24.795779428593594 24.800589638652365 25.695521461683185 24.708109471070856 31 25.08493512035223 24.553639660957774 24.669938126733516 25.69148709195648 32 24.63603390422251 24.991756696471867 24.87863917605757 25.493570223248057 33 24.26696665826173 24.4044455651027 25.536163857478133 25.792423919157436 34 24.864906802180112 24.95280951180247 25.763252322671992 24.41903136334542 35 25.671315243322923 24.58583703473825 25.470682933452295 24.27216478848653 36 24.41181604825727 25.252749384176738 25.212172934810017 25.123261632755977 37 25.504121651764066 24.723238357546016 25.063677095253794 24.70896289543612 38 24.821149407451944 24.690730647632716 25.026204007215313 25.46191593770002 39 25.285645014256065 24.32717186802956 24.98617064608104 25.40101247163334 40 25.731287700991135 24.665748588940396 25.058401380995793 24.54456232907268 41 24.399712939077137 24.710747328199854 25.956514149388056 24.93302558333495 42 25.97187578796284 25.275248753806466 25.094788292569387 23.658087165661307 43 24.8920612138022 24.030102604883915 25.38270263979673 25.69513354151716 44 24.444634094303392 24.846984890509532 25.489613437554553 25.218767577632523 45 24.66799852590337 24.982369028453945 25.246620245553466 25.10301220008922 46 24.435070547325594 24.36446891278138 25.70186559000467 25.49859494988836 47 25.014178482068388 24.34253350660434 25.84603448610276 24.79725352522451 48 25.162596737591404 25.577050642977678 24.45177182535834 24.80858079407258 49 24.426712182632816 24.92767228504374 25.545629109529262 25.099986422794192 50 24.30769827569486 25.836491650018427 24.456659619450317 25.399150454836395 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9.0 1 12.5 2 16.0 3 83.0 4 150.0 5 165.5 6 181.0 7 176.5 8 172.0 9 224.0 10 276.0 11 411.0 12 546.0 13 961.5 14 1377.0 15 1897.0 16 2417.0 17 2631.5 18 2846.0 19 3080.5 20 3315.0 21 3770.5 22 4226.0 23 4753.5 24 5281.0 25 6153.5 26 7026.0 27 9551.5 28 12077.0 29 14107.0 30 16137.0 31 17931.5 32 19726.0 33 23241.5 34 26757.0 35 31179.0 36 35601.0 37 41361.0 38 47121.0 39 50541.0 40 53961.0 41 58438.5 42 62916.0 43 66447.5 44 69979.0 45 78187.5 46 86396.0 47 93370.0 48 100344.0 49 101417.5 50 102491.0 51 98399.0 52 94307.0 53 92360.0 54 90413.0 55 91223.0 56 92033.0 57 89051.0 58 86069.0 59 78938.0 60 71807.0 61 63462.5 62 55118.0 63 48172.0 64 41226.0 65 35380.5 66 29535.0 67 25366.5 68 21198.0 69 19477.0 70 17756.0 71 13717.5 72 9679.0 73 8670.0 74 7661.0 75 5586.0 76 3511.0 77 3062.0 78 2613.0 79 2271.5 80 1930.0 81 1518.5 82 1107.0 83 945.5 84 784.0 85 648.0 86 512.0 87 365.0 88 218.0 89 136.5 90 55.0 91 40.5 92 26.0 93 17.5 94 9.0 95 6.0 96 3.0 97 5.5 98 8.0 99 5.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015516806641193242 2 0.0040343697267102435 3 8.534243652656284E-4 4 3.103361328238649E-4 5 0.0 6 2.3275209961789862E-4 7 7.758403320596622E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.3275209961789862E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1288925.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.740565752607395 #Duplication Level Percentage of deduplicated Percentage of total 1 79.51776389448536 45.91400674649842 2 12.562952735350692 14.507839969248309 3 3.5229676175072964 6.102544300889599 4 1.4210507419999605 3.2820909522496096 5 0.7591073876436407 2.1915645014763836 6 0.47268536956391544 1.6375872396960471 7 0.3177075450330433 1.284122937585594 8 0.2253286168050899 1.0408481451662694 9 0.16855914093316804 0.8759430144229144 >10 0.8893186349157679 9.237756193512087 >50 0.07052308796654701 2.8485301101317066 >100 0.06436046102559988 7.686870533524928 >500 0.006462961490524199 2.4989511927855315 >1k 0.0012118052794732874 0.8913441628126224 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 1566 0.12149659600054309 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1468 0.11389336074635839 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 1398 0.10846247842194078 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5516806641193242E-4 2 0.0 0.0 0.0 0.0 1.5516806641193242E-4 3 0.0 0.0 0.0 0.0 1.5516806641193242E-4 4 0.0 0.0 0.0 0.0 1.5516806641193242E-4 5 0.0 0.0 0.0 0.0 1.5516806641193242E-4 6 0.0 0.0 0.0 0.0 2.3275209961789864E-4 7 0.0 0.0 0.0 0.0 2.3275209961789864E-4 8 0.0 0.0 0.0 0.0 2.3275209961789864E-4 9 0.0 0.0 0.0 0.0 2.3275209961789864E-4 10 0.0 0.0 0.0 0.0 3.1033613282386484E-4 11 0.0 0.0 0.0 0.0 3.1033613282386484E-4 12 0.0 0.0 0.0 0.0 6.206722656477297E-4 13 0.0 0.0 0.0 0.0 9.310083984715946E-4 14 0.0 0.0 0.0 0.0 0.0011637604980894933 15 0.0 0.0 0.0 7.758403320596621E-5 0.0013965125977073918 16 0.0 0.0 0.0 7.758403320596621E-5 0.0013965125977073918 17 0.0 0.0 0.0 7.758403320596621E-5 0.0013965125977073918 18 0.0 0.0 0.0 3.1033613282386484E-4 0.001474096630913358 19 0.0 0.0 0.0 3.8792016602983104E-4 0.001474096630913358 20 0.0 0.0 0.0 6.206722656477297E-4 0.0017068487305312568 21 0.0 0.0 0.0 8.534243652656284E-4 0.0017068487305312568 22 0.0 0.0 0.0 0.0011637604980894933 0.0017068487305312568 23 0.0 0.0 0.0 0.0018620167969431892 0.0017844327637372228 24 0.0 0.0 0.0 0.0036464495606804118 0.0017844327637372228 25 0.0 0.0 0.0 0.005430882324417635 0.0019396008301491552 26 0.0 0.0 0.0 0.0072928991213608236 0.002094768896561088 27 0.0 0.0 0.0 0.009853172217157709 0.002094768896561088 28 0.0 0.0 0.0 0.01349962177783812 0.002172352929767054 29 0.0 0.0 0.0 0.021568361231258607 0.002172352929767054 30 0.0 0.0 0.0 0.03530073510871463 0.002172352929767054 31 7.758403320596621E-5 0.0 0.0 0.0640844114281281 0.00224993696297302 32 7.758403320596621E-5 0.0 0.0 0.10023857090210835 0.00224993696297302 33 7.758403320596621E-5 0.0 0.0 0.13654789844250054 0.00224993696297302 34 7.758403320596621E-5 0.0 0.0 0.1823224780340206 0.0024051050293849526 35 7.758403320596621E-5 0.0 0.0 0.2353899567469015 0.0024051050293849526 36 7.758403320596621E-5 0.0 0.0 0.31374983028492737 0.0024051050293849526 37 7.758403320596621E-5 0.0 0.0 0.41918653141183543 0.0024051050293849526 38 7.758403320596621E-5 0.0 0.0 0.5607773920127238 0.0024051050293849526 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATATAC 315 0.0 21.658949 1 CGCAATA 330 0.0 21.33309 36 CAATACG 325 0.0 20.307459 38 TAGCGGC 330 0.0 19.999771 30 CTAGCGG 330 0.0 19.999771 29 GTCTTAA 145 2.9467628E-10 19.731565 1 CCCTATA 125 2.2864697E-8 19.36128 2 TAGGACG 410 0.0 19.31685 4 GTAGGAC 670 0.0 19.045298 3 TGTAGGA 725 0.0 18.815037 2 TCTAGCG 355 0.0 18.591337 28 GATTTCG 225 0.0 18.577566 41 GCGCAAT 370 0.0 18.43222 35 AAGACGG 455 0.0 18.373417 5 TACGAAT 360 0.0 18.333122 41 CGAATGC 360 0.0 18.333122 43 GACGTGA 290 0.0 18.206686 7 ATACGAA 365 0.0 18.081984 40 ATACACT 455 0.0 17.889906 4 AATACGA 370 0.0 17.837633 39 >>END_MODULE