Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062485_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 336002 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 1938 | 0.5767822810578509 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 1666 | 0.4958303819620122 | No Hit |
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA | 802 | 0.23868905542228916 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 752 | 0.22380819161790705 | No Hit |
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG | 592 | 0.17618942744388427 | No Hit |
CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC | 481 | 0.14315390979815595 | No Hit |
GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA | 439 | 0.13065398420247498 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC | 400 | 0.11904691043505694 | No Hit |
GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG | 396 | 0.11785644133070637 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 353 | 0.10505889845893773 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAACATA | 30 | 1.2991617E-4 | 36.666542 | 4 |
CGTAAAT | 25 | 0.002350422 | 35.199883 | 3 |
CCCTATA | 30 | 0.0057351086 | 29.337599 | 1 |
GTGTACG | 30 | 0.0057351086 | 29.337599 | 1 |
TAGGACG | 60 | 2.9347757E-7 | 29.333233 | 4 |
CGCAATA | 100 | 1.8189894E-12 | 28.599905 | 36 |
TACGAGC | 40 | 7.0216367E-4 | 27.499907 | 14 |
GATTATA | 50 | 8.3156076E-5 | 26.403841 | 1 |
CGAATGC | 110 | 7.2759576E-12 | 25.999914 | 43 |
ATACGAA | 110 | 7.2759576E-12 | 25.999914 | 40 |
CTTGCGC | 115 | 1.2732926E-11 | 24.869482 | 3 |
GCAATAC | 115 | 1.2732926E-11 | 24.869482 | 37 |
CGCCGGT | 115 | 1.2732926E-11 | 24.869482 | 7 |
AATACGA | 115 | 1.2732926E-11 | 24.869482 | 39 |
GACCGTG | 45 | 0.0013961433 | 24.444363 | 6 |
AAACGGG | 45 | 0.0013961433 | 24.444363 | 41 |
ATTATAC | 45 | 0.0013961433 | 24.444363 | 3 |
AATAACG | 90 | 1.5043042E-8 | 24.444363 | 2 |
GTCCTAT | 110 | 2.0008883E-10 | 24.00349 | 1 |
TAGATAG | 55 | 1.5903177E-4 | 23.99992 | 9 |