FastQCFastQC Report
Thu 2 Feb 2017
SRR4062483_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062483_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1379086
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATAG703.207154E-522.0076541
ATACGAA2700.020.3700740
CGTAACA550.004482429520.0011542
CAATACG2650.019.09405738
TAGGACA4050.019.0134434
GTCCTAC10300.018.8026541
TAAACGC2350.018.72312728
CGAATGC2850.018.52604143
TATACCG600.007411701618.3337255
TCCTACA10600.018.2652032
CGCAATA2800.018.07116136
TGTAGGA10400.017.9818082
CCATTAG1254.836038E-717.6061231
TTAGGAC6250.017.6010153
AATACGA3000.017.5997439
GATTTCG4150.017.49371541
GTAGGAC10900.017.1569543
CCTACAG11800.016.9670813
GTCCTAA6650.016.8780481
TACGAAT3000.016.86641741
Produced by FastQC (version 0.11.5)