##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062481_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 454973 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.19560721185653 32.0 32.0 32.0 32.0 32.0 2 31.312385570132733 32.0 32.0 32.0 32.0 32.0 3 31.45381813865878 32.0 32.0 32.0 32.0 32.0 4 31.582535666951664 32.0 32.0 32.0 32.0 32.0 5 31.506421260162693 32.0 32.0 32.0 32.0 32.0 6 35.090091060348634 36.0 36.0 36.0 36.0 36.0 7 35.11318034256978 36.0 36.0 36.0 36.0 36.0 8 35.04438724935326 36.0 36.0 36.0 36.0 36.0 9 35.196470999377986 36.0 36.0 36.0 36.0 36.0 10 35.05416365366736 36.0 36.0 36.0 36.0 36.0 11 35.20844533631666 36.0 36.0 36.0 36.0 36.0 12 35.114158422587714 36.0 36.0 36.0 36.0 36.0 13 35.15485314513169 36.0 36.0 36.0 36.0 36.0 14 35.11834768217015 36.0 36.0 36.0 36.0 36.0 15 35.069593140691865 36.0 36.0 36.0 36.0 36.0 16 35.08040916713739 36.0 36.0 36.0 36.0 36.0 17 35.06454448945322 36.0 36.0 36.0 36.0 36.0 18 35.06253557903436 36.0 36.0 36.0 36.0 36.0 19 35.05402518391201 36.0 36.0 36.0 36.0 36.0 20 35.029151180399715 36.0 36.0 36.0 36.0 36.0 21 35.01553278985786 36.0 36.0 36.0 36.0 36.0 22 34.98964334147301 36.0 36.0 36.0 36.0 36.0 23 34.923667997881196 36.0 36.0 36.0 32.0 36.0 24 34.91520156141134 36.0 36.0 36.0 32.0 36.0 25 34.87949834385777 36.0 36.0 36.0 32.0 36.0 26 34.82403790994191 36.0 36.0 36.0 32.0 36.0 27 34.81803755387682 36.0 36.0 36.0 32.0 36.0 28 34.76343431368455 36.0 36.0 36.0 32.0 36.0 29 34.736023895923495 36.0 36.0 36.0 32.0 36.0 30 34.7019823154341 36.0 36.0 36.0 32.0 36.0 31 34.69494233723759 36.0 36.0 36.0 32.0 36.0 32 34.64453495042563 36.0 36.0 36.0 32.0 36.0 33 34.624683222960485 36.0 36.0 36.0 32.0 36.0 34 34.592685719811946 36.0 36.0 36.0 32.0 36.0 35 34.5500172537711 36.0 36.0 36.0 32.0 36.0 36 34.51243700175615 36.0 36.0 36.0 32.0 36.0 37 34.46223182474564 36.0 36.0 36.0 32.0 36.0 38 34.383862339083855 36.0 36.0 36.0 32.0 36.0 39 34.30039145180044 36.0 36.0 36.0 32.0 36.0 40 34.23869328509604 36.0 36.0 36.0 32.0 36.0 41 34.24040547461058 36.0 36.0 36.0 32.0 36.0 42 34.12664048196267 36.0 36.0 36.0 32.0 36.0 43 34.142327127104245 36.0 36.0 36.0 32.0 36.0 44 34.12253474381996 36.0 36.0 36.0 32.0 36.0 45 33.97661839273979 36.0 36.0 36.0 32.0 36.0 46 34.050528273106316 36.0 36.0 36.0 32.0 36.0 47 33.98744321091581 36.0 36.0 36.0 32.0 36.0 48 33.96988612511072 36.0 36.0 36.0 32.0 36.0 49 33.98627171282691 36.0 36.0 36.0 32.0 36.0 50 33.41165519712159 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 4.0 21 13.0 22 44.0 23 119.0 24 317.0 25 795.0 26 1703.0 27 3268.0 28 5692.0 29 8587.0 30 12012.0 31 17616.0 32 26237.0 33 39832.0 34 82300.0 35 256434.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.294093078365464 17.30837292017929 11.298573114944373 26.09896088651087 2 15.520201165405354 20.282273397677542 37.334954027814106 26.862571409102998 3 19.334369305905703 24.325500530807727 28.22688238927219 28.113247774014376 4 12.269573225546242 15.564728301364264 35.78294001156117 36.38275846152832 5 13.690482731942335 37.283970697162246 33.96860912625584 15.056937444639573 6 34.984295564293674 34.71504526701937 16.720773154976076 13.579886013710885 7 29.995186527552185 30.223991313770266 20.90937264409097 18.87144951458658 8 28.181452525754274 33.8848678932596 19.580722372536393 18.352957208449734 9 27.272387592230746 14.248977411846417 18.040630982497863 40.43800401342497 10 15.237827299641957 27.7640651203478 32.854916665384536 24.143190914625702 11 37.63893681603084 21.063008134548646 21.44654737753669 19.851507671883827 12 23.56073876911377 23.882516105351307 29.748798280337514 22.807946845197407 13 30.595002340798246 19.714576469372908 24.92301740982432 24.76740378000453 14 23.05235695304996 19.49346444734083 25.321282801397004 32.1328957982122 15 25.347877786154342 27.209087132643035 23.355451861978622 24.087583219223998 16 25.617124532664576 25.9265934462045 24.708938772190876 23.747343248940048 17 23.76866319539841 26.226831042721216 26.194301639877533 23.810204122002844 18 24.841034522927735 24.717510709426712 27.562734491936887 22.87872027570867 19 25.039727632189162 26.458053554826332 25.23556342903865 23.26665538394586 20 24.751139078582685 24.42254815120897 27.195240157108223 23.63107261310012 21 25.40128754893147 25.25930110138404 24.265176175289525 25.074235174394964 22 24.260560516777918 25.888569211799386 25.36436228083864 24.486507990584055 23 23.421829427240738 25.457994210645467 25.38766036665912 25.732515995454676 24 23.841414765271786 26.359805966507903 25.388539539708948 24.410239728511364 25 24.961261437491896 24.96345937011647 25.112039615537622 24.96323957685401 26 23.5466720003165 25.558000145063552 25.823730199374467 25.071597655245476 27 25.098192640002814 25.87450244300211 25.405683414180626 23.621621502814452 28 24.250889613229795 24.907631881452303 25.673171814591196 25.168306690726705 29 23.71920971134551 25.802410252916108 26.308594136355346 24.16978589938304 30 24.87773999775811 25.304138926925333 26.102428056170368 23.71569301914619 31 24.14450967420045 25.234464462726358 25.5969035525185 25.02412231055469 32 23.859437812793285 25.77493609510894 25.77911216709563 24.586513925002144 33 23.460732834695687 25.363483107788813 26.03846821679528 25.13731584072022 34 23.518318669459507 26.02330248168573 26.595204550599703 23.86317429825506 35 24.875322271871077 25.381725948572768 26.209027788462176 23.533923991093978 36 24.061208027729116 26.097592604396304 25.854281462856036 23.98691790501854 37 24.94279880344548 25.492501752851265 25.677128093315428 23.887571350387827 38 24.1715442454827 25.950770705074806 25.206111131869363 24.67157391757313 39 24.425845050145835 25.38502284750963 25.84043448732122 24.34869761502331 40 25.088082149929775 25.52766867484444 25.23842074145059 24.14582843377519 41 23.72888061489363 25.46744532093113 26.243974917192887 24.559699146982346 42 25.374912357436596 26.029896279559445 25.433816951775164 23.1613744112288 43 24.43771388631853 24.74894114595811 25.525690535482326 25.287654432241034 44 23.901638119185094 25.470742219867994 26.469702597736568 24.157917063210345 45 24.728280579287123 25.48173188299086 25.542175030166625 24.247812507555395 46 23.928013310679972 25.213144516268 26.468164044899368 24.39067812815266 47 24.891806766555376 24.821253129306577 26.48289019348401 23.804049910654037 48 24.038129735171097 27.21348299789218 24.890707800243092 23.85767946669363 49 23.66645932835575 25.36721959325059 26.789721587874443 24.17659949051922 50 23.571948225499096 26.947972736843724 24.606734905148215 24.87334413250896 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9.0 1 9.5 2 10.0 3 42.0 4 74.0 5 89.0 6 104.0 7 87.0 8 70.0 9 94.5 10 119.0 11 182.5 12 246.0 13 430.5 14 615.0 15 855.0 16 1095.0 17 1217.5 18 1340.0 19 1495.5 20 1651.0 21 1862.0 22 2073.0 23 2342.0 24 2611.0 25 2972.5 26 3334.0 27 4039.0 28 4744.0 29 5612.0 30 6480.0 31 7381.0 32 8282.0 33 9692.0 34 11102.0 35 12765.5 36 14429.0 37 16084.5 38 17740.0 39 18885.5 40 20031.0 41 21798.5 42 23566.0 43 24623.5 44 25681.0 45 29537.0 46 33393.0 47 36330.5 48 39268.0 49 38526.0 50 37784.0 51 35419.5 52 33055.0 53 31952.5 54 30850.0 55 30206.5 56 29563.0 57 28366.5 58 27170.0 59 24859.5 60 22549.0 61 19913.0 62 17277.0 63 14868.5 64 12460.0 65 10559.0 66 8658.0 67 7309.5 68 5961.0 69 5226.0 70 4491.0 71 3458.5 72 2426.0 73 2158.5 74 1891.0 75 1419.0 76 947.0 77 827.0 78 707.0 79 611.0 80 515.0 81 377.5 82 240.0 83 217.0 84 194.0 85 140.5 86 87.0 87 70.5 88 54.0 89 35.5 90 17.0 91 11.0 92 5.0 93 3.0 94 1.0 95 2.0 96 3.0 97 1.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014506355322183953 2 0.005275038298975984 3 0.001318759574743996 4 4.395865249146653E-4 5 0.0 6 0.001318759574743996 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 454973.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 69.85511499718375 #Duplication Level Percentage of deduplicated Percentage of total 1 85.40816800094592 59.66197397404868 2 9.763676274514314 13.640854579029444 3 2.222449237651353 4.657483412146159 4 0.8358813370688546 2.3356234769977826 5 0.4459232815948653 1.5575011057865433 6 0.2601350926605054 1.0903060087561596 7 0.17458329629202335 0.8536875367346687 8 0.13210450995720385 0.7382540587765667 9 0.0876553528550557 0.5510857278427771 >10 0.5844793620778295 7.845622248688747 >50 0.054313798619172994 2.582412170164889 >100 0.029051566290622898 3.395054691118666 >500 9.473336833898764E-4 0.41161536311009217 >1k 6.315557889265843E-4 0.6785256467988443 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 1577 0.34661397489521356 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 1499 0.3294701004235416 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 663 0.14572293300921152 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 645 0.14176665428497953 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 558 0.12264464045119161 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 2.1979326245733264E-4 0.0 11 0.0 0.0 0.0 2.1979326245733264E-4 0.0 12 0.0 0.0 0.0 2.1979326245733264E-4 4.395865249146653E-4 13 0.0 0.0 0.0 2.1979326245733264E-4 6.593797873719979E-4 14 0.0 0.0 0.0 2.1979326245733264E-4 6.593797873719979E-4 15 0.0 0.0 0.0 4.395865249146653E-4 6.593797873719979E-4 16 0.0 0.0 0.0 4.395865249146653E-4 8.791730498293306E-4 17 0.0 0.0 0.0 4.395865249146653E-4 8.791730498293306E-4 18 0.0 0.0 0.0 4.395865249146653E-4 8.791730498293306E-4 19 0.0 0.0 0.0 6.593797873719979E-4 8.791730498293306E-4 20 0.0 0.0 0.0 8.791730498293306E-4 8.791730498293306E-4 21 0.0 0.0 0.0 8.791730498293306E-4 0.0010989663122866632 22 0.0 0.0 0.0 0.0010989663122866632 0.0010989663122866632 23 0.0 0.0 0.0 0.0026375191494879915 0.0010989663122866632 24 0.0 0.0 0.0 0.004615658511603986 0.0010989663122866632 25 0.0 0.0 0.0 0.006593797873719979 0.0010989663122866632 26 0.0 0.0 0.0 0.010769869860409299 0.0010989663122866632 27 0.0 0.0 0.0 0.014066768797269289 0.0010989663122866632 28 0.0 0.0 0.0 0.01934180709624527 0.0010989663122866632 29 0.0 0.0 0.0 0.024616845395221253 0.0010989663122866632 30 0.0 0.0 0.0 0.039782580504777204 0.0010989663122866632 31 0.0 0.0 0.0 0.06615777199965713 0.0010989663122866632 32 0.0 0.0 0.0 0.09846738158088501 0.0010989663122866632 33 0.0 0.0 0.0 0.1279196787501676 0.0010989663122866632 34 0.0 0.0 0.0 0.1615480479061395 0.0010989663122866632 35 0.0 0.0 0.0 0.20638587344743534 0.0010989663122866632 36 0.0 0.0 0.0 0.26968633303514716 0.0010989663122866632 37 0.0 0.0 0.0 0.36265888305459887 0.0010989663122866632 38 0.0 0.0 0.0 0.46354399052251455 0.0010989663122866632 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTATA 25 0.0023512556 35.2 7 GCGAACA 25 0.0023512556 35.2 44 TGGTATA 110 0.0 28.0 44 CGCGCAA 40 7.0253457E-4 27.500002 21 AATCGAG 65 1.8101682E-5 23.692308 22 TAGGACG 160 0.0 23.375002 4 CGAGCCG 85 2.3459506E-7 23.294119 15 TTAGGAC 160 0.0 22.000002 3 AGGACGT 170 0.0 22.0 5 GCGCAAA 50 0.0025779877 22.0 22 TAGGACA 135 1.1277734E-10 21.185184 4 CGCAATA 75 5.4630276E-5 20.533333 36 GTATTAT 65 4.925663E-4 20.307693 1 GTAGGAC 260 0.0 20.307693 3 GCGCGCA 55 0.0044793896 20.0 20 CGCAAAT 55 0.0044793896 20.0 23 TGTAGGA 280 0.0 19.642857 2 TATGGCG 305 0.0 19.475409 16 TAGGATG 80 8.9728805E-5 19.250002 5 CTGTAGG 275 0.0 19.2 1 >>END_MODULE