##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062469_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 449463 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.04385455532491 32.0 32.0 32.0 32.0 32.0 2 31.46082992370896 32.0 32.0 32.0 32.0 32.0 3 31.543646529302745 32.0 32.0 32.0 32.0 32.0 4 31.647917626144977 32.0 32.0 32.0 32.0 32.0 5 31.619054293679348 32.0 32.0 32.0 32.0 32.0 6 35.19589154168419 36.0 36.0 36.0 36.0 36.0 7 35.20019222939374 36.0 36.0 36.0 36.0 36.0 8 35.19026927689265 36.0 36.0 36.0 36.0 36.0 9 35.23199462469658 36.0 36.0 36.0 36.0 36.0 10 35.175329226209946 36.0 36.0 36.0 36.0 36.0 11 35.244436138236075 36.0 36.0 36.0 36.0 36.0 12 35.170610261578815 36.0 36.0 36.0 36.0 36.0 13 35.18161227954248 36.0 36.0 36.0 36.0 36.0 14 35.14649704202571 36.0 36.0 36.0 36.0 36.0 15 35.150650887837266 36.0 36.0 36.0 36.0 36.0 16 35.118637129196394 36.0 36.0 36.0 36.0 36.0 17 35.108226928579214 36.0 36.0 36.0 36.0 36.0 18 35.09563189851 36.0 36.0 36.0 36.0 36.0 19 35.053650689823186 36.0 36.0 36.0 36.0 36.0 20 35.00568456135433 36.0 36.0 36.0 36.0 36.0 21 34.90434140296309 36.0 36.0 36.0 36.0 36.0 22 34.876074337598425 36.0 36.0 36.0 32.0 36.0 23 34.76249657925124 36.0 36.0 36.0 32.0 36.0 24 34.755301326249324 36.0 36.0 36.0 32.0 36.0 25 34.710165241632794 36.0 36.0 36.0 32.0 36.0 26 34.63245695418755 36.0 36.0 36.0 32.0 36.0 27 34.565261211712645 36.0 36.0 36.0 32.0 36.0 28 34.48388187681745 36.0 36.0 36.0 32.0 36.0 29 34.42087335331273 36.0 36.0 36.0 32.0 36.0 30 34.378531714512654 36.0 36.0 36.0 32.0 36.0 31 34.31199008594701 36.0 36.0 36.0 32.0 36.0 32 34.25262146161086 36.0 36.0 36.0 32.0 36.0 33 34.15018366361636 36.0 36.0 36.0 32.0 36.0 34 34.069620858669126 36.0 36.0 36.0 32.0 36.0 35 33.91844712467989 36.0 36.0 36.0 32.0 36.0 36 33.83473389355742 36.0 36.0 36.0 32.0 36.0 37 33.689952231885606 36.0 36.0 36.0 27.0 36.0 38 33.544474183636915 36.0 36.0 36.0 21.0 36.0 39 33.20787028075726 36.0 36.0 36.0 14.0 36.0 40 32.9867286072491 36.0 36.0 36.0 14.0 36.0 41 33.056945733019184 36.0 36.0 36.0 14.0 36.0 42 32.66895606534909 36.0 36.0 36.0 14.0 36.0 43 32.73518176134632 36.0 36.0 36.0 14.0 36.0 44 32.755114436560966 36.0 36.0 36.0 14.0 36.0 45 32.31541417202306 36.0 36.0 36.0 14.0 36.0 46 32.56314535345512 36.0 36.0 36.0 14.0 36.0 47 32.29992457666148 36.0 36.0 36.0 14.0 36.0 48 32.3787230539555 36.0 36.0 36.0 14.0 36.0 49 32.442107581714176 36.0 36.0 36.0 14.0 36.0 50 31.72713883011505 36.0 32.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 7.0 21 19.0 22 84.0 23 253.0 24 671.0 25 1627.0 26 3590.0 27 6725.0 28 11263.0 29 15222.0 30 19495.0 31 24771.0 32 35348.0 33 36912.0 34 62378.0 35 231098.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.3049480626986 18.530534860743945 13.448512198812606 22.716004877744844 2 11.475220163849073 23.39677552854899 40.17617557927901 24.951828728322926 3 18.593521602445584 30.21828270625168 29.053114494407772 22.135081196894962 4 10.676740910820245 18.470263403216727 37.17747623274886 33.67551945321417 5 10.206401861777277 41.316637854506375 35.257407172559255 13.219553111157092 6 29.41618831486673 35.79183909580385 21.000311484892983 13.791661104436434 7 25.716466093983264 33.77919873270992 23.237062895054766 17.267272278252047 8 28.409679995906227 33.1079532686784 22.588066203447223 15.894300531968147 9 27.884163991251782 15.95303729116746 19.79250794837395 36.37029076920681 10 14.69130940700347 30.108818745925692 35.00466111782282 20.195210729248014 11 33.11907765489039 23.536086396433078 22.095923357428752 21.24891259124778 12 21.337462705495224 27.55488215937686 31.844000507272014 19.263654627855907 13 30.959611803418746 22.744030098139334 26.14253008590251 20.153828012539407 14 23.350086658968593 21.190398319772708 27.990735611162656 27.46877941009605 15 25.009400106349133 27.60850170091865 29.219090336690673 18.163007856041542 16 23.192787837931043 27.282779672631563 29.519448764414424 20.00498372502297 17 20.662657437875865 27.210471162253626 31.51249379815469 20.614377601715823 18 22.642798183610218 24.371527800953583 34.238190907816666 18.747483107619537 19 20.87179589866129 31.773026923239513 28.996380124726617 18.35879705337258 20 21.40398653504293 24.761993756994457 35.280545895880195 18.55347381208242 21 22.41074348722809 28.313342811310388 26.237532344152914 23.03838135730861 22 20.062830533325325 30.154428729394855 28.011426969516958 21.771313767762866 23 19.58759675434908 28.7084810095603 27.889058721185055 23.814863514905564 24 19.03070998057682 31.399247546516623 28.626828014764282 20.943214458142272 25 23.22972080015485 26.487163570749985 27.307920785470664 22.975194843624504 26 18.303620097761105 26.810660721794676 30.513078940869438 24.372640239574782 27 22.933144663743178 29.707895866845547 29.195506637921255 18.163452831490023 28 20.915625980336536 25.710013949980308 29.4969775042662 23.87738256541695 29 19.467008407811097 29.2566907620872 32.023770588457786 19.252530241643917 30 23.76146646108801 26.32230016708828 30.67794234453114 19.23829102729257 31 19.06742045507639 27.49859276514418 29.902350137831146 23.531636641948282 32 18.49028729839831 29.496087553369243 30.631442410165022 21.382182738067428 33 19.039164514097934 28.684674823066636 30.18290715809755 22.093253504737874 34 17.800575353254885 30.314397403123284 32.655413237574614 19.229614006047218 35 22.27035373323277 28.6548614680185 29.573958256853178 19.50082654189555 36 20.714052102175263 29.353472922131523 30.250765913990698 19.68170906170252 37 22.21028204768802 29.058231712065286 29.46582922287263 19.265657017374068 38 20.45196156302076 29.99090025207859 27.1661961051299 22.39094207977075 39 19.53775950411936 29.204628634615087 30.49683733699993 20.760774524265624 40 22.21094951086074 28.783459372629117 27.834326741022064 21.171264375488082 41 19.060745823349194 28.342266215461564 30.146864146770703 22.45012381441854 42 22.721336350266874 29.51544398537811 29.068688635104557 18.69453102925046 43 21.367276060543357 27.245401734959273 27.7669129605774 23.62040924391997 44 20.72806882880237 27.69460445019946 32.31077975272714 19.266546968271026 45 22.453683618006377 27.828319572467592 29.341236097298328 20.376760712227703 46 20.64352349359124 27.66078631611501 31.009004078199986 20.686686112093767 47 22.660152226100923 26.505185076413408 30.995877302469836 19.83878539501583 48 19.25030536440152 33.513770877691826 26.911892636323792 20.324031121582866 49 19.170209783675183 27.412712503587617 33.24856551039797 20.168512202339237 50 18.420467136265135 33.05507473379284 25.88049712767709 22.64396100226493 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 19.0 1 19.0 2 19.0 3 98.0 4 177.0 5 210.5 6 244.0 7 244.0 8 244.0 9 340.5 10 437.0 11 642.0 12 847.0 13 1469.0 14 2091.0 15 2864.0 16 3637.0 17 4285.0 18 4933.0 19 5301.0 20 5669.0 21 6215.5 22 6762.0 23 6883.5 24 7005.0 25 7076.5 26 7148.0 27 8408.0 28 9668.0 29 10844.0 30 12020.0 31 13008.0 32 13996.0 33 16329.0 34 18662.0 35 20932.0 36 23202.0 37 25069.0 38 26936.0 39 26685.5 40 26435.0 41 27539.0 42 28643.0 43 30412.5 44 32182.0 45 38733.5 46 45285.0 47 49006.0 48 52727.0 49 45989.5 50 39252.0 51 31655.0 52 24058.0 53 19712.5 54 15367.0 55 13629.5 56 11892.0 57 10666.0 58 9440.0 59 7990.0 60 6540.0 61 5517.5 62 4495.0 63 3787.0 64 3079.0 65 2673.0 66 2267.0 67 1865.0 68 1463.0 69 1252.5 70 1042.0 71 839.5 72 637.0 73 538.5 74 440.0 75 340.5 76 241.0 77 182.0 78 123.0 79 104.0 80 85.0 81 55.5 82 26.0 83 18.5 84 11.0 85 9.5 86 8.0 87 5.5 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 1.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01668657931798613 2 0.0055621931059953765 3 0.0 4 0.0 5 0.0 6 6.674631727194452E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 2.2248772423981506E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 449463.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.60835928893646 #Duplication Level Percentage of deduplicated Percentage of total 1 83.0623681689297 48.68149117034552 2 11.038798456975679 12.93931732169176 3 2.7514186773764298 4.837684031939045 4 1.06151356425705 2.488542734562269 5 0.48972139770695644 1.4350883814144724 6 0.2959113573744346 1.0405727490406644 7 0.19127410661272753 0.7847183094120351 8 0.1402642489532382 0.6576525998435371 9 0.09903241043168357 0.5223714382646577 >10 0.6969047035941182 8.05149763280884 >50 0.09748272453309106 4.031799187192937 >100 0.06613533859445572 7.458212354963995 >500 0.004969707524438869 1.916532939328347 >1k 0.0038228519418760532 3.898040691890879 >5k 3.8228519418760524E-4 1.2564784573010719 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 5608 1.2477111575368829 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 4878 1.0852951188418178 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 2133 0.4745663158035256 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 1956 0.4351859886130783 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 1294 0.2878991151663207 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 1240 0.27588477805737066 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 1232 0.2741048762634522 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 1197 0.26631780591505866 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 1168 0.259865661912104 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 1150 0.2558608828757873 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1150 0.2558608828757873 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 939 0.20891597306118637 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATA 938 0.20869348533694654 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 818 0.18199495842816873 No Hit ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC 762 0.16953564587073908 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 675 0.15017921386187516 No Hit CAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTA 627 0.13949980309836404 No Hit GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 611 0.13593999951052702 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 571 0.12704049054093441 No Hit GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 562 0.12503810102277607 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACCTGTCTCTTATA 517 0.11502615343198438 No Hit ATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACT 516 0.11480366570774457 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 510 0.11346873936230568 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 508 0.11302376391382607 No Hit GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 484 0.1076840585320705 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 471 0.1047917181169529 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGACTGTCTCTTATA 469 0.10434674266847327 No Hit CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 462 0.10278932859879455 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 2.2248772423981506E-4 0.0 13 0.0 0.0 0.0 2.2248772423981506E-4 0.0 14 0.0 0.0 0.0 2.2248772423981506E-4 0.0 15 0.0 0.0 0.0 6.674631727194452E-4 0.0 16 0.0 0.0 0.0 8.899508969592603E-4 0.0 17 0.0 0.0 0.0 8.899508969592603E-4 0.0 18 0.0 0.0 0.0 0.0011124386211990754 0.0 19 0.0 0.0 0.0 0.0013349263454388903 0.0 20 0.0 0.0 0.0 0.0020023895181583355 0.0 21 0.0 0.0 0.0 0.0026698526908777807 0.0 22 0.0 0.0 0.0 0.005339705381755561 0.0 23 0.0 0.0 0.0 0.009566972142312048 0.0 24 2.2248772423981506E-4 0.0 0.0 0.015129165248307425 0.0 25 2.2248772423981506E-4 0.0 0.0 0.018466481111904652 0.0 26 2.2248772423981506E-4 0.0 0.0 0.02491862511485929 0.0 27 2.2248772423981506E-4 0.0 0.0 0.036265499051089854 0.0 28 2.2248772423981506E-4 0.0 0.0 0.05339705381755561 0.0 29 2.2248772423981506E-4 0.0 0.0 0.07453338762033805 0.0 30 2.2248772423981506E-4 0.0 0.0 0.11280127618958624 0.0 31 2.2248772423981506E-4 0.0 0.0 0.182884909325128 0.0 32 2.2248772423981506E-4 0.0 0.0 0.2643154163969003 0.0 33 2.2248772423981506E-4 0.0 0.0 0.3377363653960393 0.0 34 2.2248772423981506E-4 0.0 0.0 0.4358534517857977 0.0 35 2.2248772423981506E-4 0.0 0.0 0.5488772156996238 0.0 36 2.2248772423981506E-4 0.0 0.0 0.7201927633642814 0.0 37 2.2248772423981506E-4 0.0 0.0 0.9555847756100058 0.0 38 2.2248772423981506E-4 0.0 0.0 1.2170078515917884 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTATA 60 1.9826984E-10 36.66639 44 TGCGATT 25 0.0023513136 35.19973 44 CGGACGG 30 0.0057414365 29.33311 28 TTCGTAC 70 3.5804987E-8 28.285498 34 CGCGGTA 85 8.20728E-9 25.882156 43 AATTCGT 80 1.3061072E-7 24.749813 32 TCGTACA 80 1.3061072E-7 24.749813 35 GTCCATA 45 0.0013951008 24.4497 1 ACTAGAT 45 0.001396911 24.44426 3 CTCGTTA 55 1.5915291E-4 23.999817 13 CCGTTTC 65 1.810212E-5 23.692127 23 TGGTATA 375 0.0 23.466488 44 CGTACAT 85 2.3460052E-7 23.29394 36 AAATTCG 90 4.0703162E-7 21.999834 31 TAGGAGC 90 4.0703162E-7 21.999834 44 TCCGGTC 120 5.9480953E-10 21.999834 23 AATCCCG 70 3.209751E-5 21.999832 19 ATCTAGG 100 4.608046E-8 21.999832 41 TATGCGT 200 0.0 21.999832 39 CCCGTTT 70 3.209751E-5 21.999832 22 >>END_MODULE