##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062467_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2127534 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.334648000925014 32.0 32.0 32.0 32.0 32.0 2 31.518920496687713 32.0 32.0 32.0 32.0 32.0 3 31.579944668334324 32.0 32.0 32.0 32.0 32.0 4 31.658251289991135 32.0 32.0 32.0 32.0 32.0 5 31.639581318089395 32.0 32.0 32.0 32.0 32.0 6 35.23670033005348 36.0 36.0 36.0 36.0 36.0 7 35.26308580732435 36.0 36.0 36.0 36.0 36.0 8 35.20213166981115 36.0 36.0 36.0 36.0 36.0 9 35.31984494724879 36.0 36.0 36.0 36.0 36.0 10 35.23796094445494 36.0 36.0 36.0 36.0 36.0 11 35.32554121344242 36.0 36.0 36.0 36.0 36.0 12 35.26213635128745 36.0 36.0 36.0 36.0 36.0 13 35.29026234128338 36.0 36.0 36.0 36.0 36.0 14 35.26224868791756 36.0 36.0 36.0 36.0 36.0 15 35.22852701766458 36.0 36.0 36.0 36.0 36.0 16 35.26330437022393 36.0 36.0 36.0 36.0 36.0 17 35.27181610258638 36.0 36.0 36.0 36.0 36.0 18 35.275227093903084 36.0 36.0 36.0 36.0 36.0 19 35.235725022490826 36.0 36.0 36.0 36.0 36.0 20 35.2134748492856 36.0 36.0 36.0 36.0 36.0 21 35.18585648924999 36.0 36.0 36.0 36.0 36.0 22 35.16965557307192 36.0 36.0 36.0 36.0 36.0 23 35.16237343328003 36.0 36.0 36.0 36.0 36.0 24 35.153721162623015 36.0 36.0 36.0 36.0 36.0 25 35.121573145247034 36.0 36.0 36.0 36.0 36.0 26 35.08733068425698 36.0 36.0 36.0 36.0 36.0 27 35.03664195260804 36.0 36.0 36.0 36.0 36.0 28 35.005421769992864 36.0 36.0 36.0 36.0 36.0 29 34.97744524881858 36.0 36.0 36.0 36.0 36.0 30 34.92903427160271 36.0 36.0 36.0 36.0 36.0 31 34.92676826786317 36.0 36.0 36.0 36.0 36.0 32 34.898656848727214 36.0 36.0 36.0 36.0 36.0 33 34.91999328800386 36.0 36.0 36.0 36.0 36.0 34 34.889558051716214 36.0 36.0 36.0 36.0 36.0 35 34.86749635963515 36.0 36.0 36.0 36.0 36.0 36 34.80521251364255 36.0 36.0 36.0 36.0 36.0 37 34.74956122910374 36.0 36.0 36.0 36.0 36.0 38 34.71377237684568 36.0 36.0 36.0 32.0 36.0 39 34.56872651623899 36.0 36.0 36.0 32.0 36.0 40 34.632671910296146 36.0 36.0 36.0 32.0 36.0 41 34.59704098735907 36.0 36.0 36.0 32.0 36.0 42 34.6057816232314 36.0 36.0 36.0 32.0 36.0 43 34.583809706448875 36.0 36.0 36.0 32.0 36.0 44 34.506980381982146 36.0 36.0 36.0 32.0 36.0 45 34.48186397961208 36.0 36.0 36.0 32.0 36.0 46 34.36487830511757 36.0 36.0 36.0 32.0 36.0 47 34.3802792340804 36.0 36.0 36.0 32.0 36.0 48 34.314872053748616 36.0 36.0 36.0 32.0 36.0 49 34.26748291684175 36.0 36.0 36.0 32.0 36.0 50 33.85169684714792 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 15.0 21 32.0 22 117.0 23 434.0 24 1019.0 25 2701.0 26 5896.0 27 11611.0 28 20673.0 29 31713.0 30 45483.0 31 64672.0 32 94297.0 33 150886.0 34 321487.0 35 1376493.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.06159725346455 22.124550286786928 12.947885683876702 25.86596677587182 2 11.303728174287942 22.190425782942924 47.0692697546608 19.43657628810833 3 17.770336677911356 27.777890062763127 31.46701586774855 22.984757391576967 4 10.19586092793051 18.92838173844787 41.9454484778123 28.930308855809315 5 9.5876303681306 41.575148305572704 37.71532568472498 11.121895641571717 6 27.77455806505136 41.078364047512615 19.7532900998769 11.393787787559125 7 25.073641630940624 33.459786522700234 24.23619281111033 17.23037903524881 8 21.286475327773847 43.84465771169814 21.182834210875125 13.686032749652885 9 26.118031486218317 15.551666859378042 22.330265932295323 36.00003572210832 10 14.324847452496648 30.352605410771343 36.72284438227544 18.59970275445657 11 31.964847565303305 21.542311427220433 30.15171555425201 16.34112545322425 12 24.77685432994255 25.010740133882702 34.871781132522436 15.340624403652303 13 29.10858298856798 24.174889801996112 27.44496680194065 19.27156040749525 14 17.83675372520486 26.930474436601248 28.594278634325 26.63849320386889 15 19.205145487686686 39.781549907075515 23.4042793205655 17.6090252846723 16 17.50735828428594 29.34937820030138 34.713193772696464 18.430069742716213 17 17.578943509245914 32.69470664158599 31.619236167318594 18.1071136818495 18 17.65927125018919 28.20659975351745 38.04352832904198 16.09060066725138 19 23.12245068703955 26.83378973026988 28.992956164272815 21.050803418417754 20 22.65341000425845 30.561720752758823 30.73854518893705 16.04632405404567 21 20.12809195998748 27.82944949410914 28.09755331759681 23.944905228306574 22 21.696151506861934 33.57130837862051 28.358277705550183 16.374262408967375 23 18.013437153060774 33.04111708673046 31.1615701558706 17.783875604338167 24 22.55733633399043 28.83629591818509 31.78609601538683 16.820271732437647 25 19.77467810150155 31.276256924683693 31.831594700719236 17.117470273095517 26 15.943858006499545 32.831484714227834 33.37023051100476 17.854426768267864 27 17.77339398571304 32.677080601297085 31.09562526380307 18.453900149186804 28 16.74713541593225 32.88859308476386 29.51022169328434 20.85404980601955 29 19.80711001563312 29.630501792215775 28.65975349865149 21.90263469349961 30 17.56512469365942 30.057333983851724 31.320392529567094 21.05714879292176 31 21.513686737791264 28.05008051575204 30.628511694760224 19.807721051696472 32 18.166384179994303 32.12761817202451 30.945874425508595 18.76012322247259 33 17.058246777724822 32.604414312532725 33.4438368552512 16.893502054491254 34 18.5458845781078 31.614065862167184 33.13455860164866 16.705490958076346 35 17.673419085194407 32.89799363958461 31.69580368633357 17.732783588887415 36 16.6557620230746 31.07555507926078 33.545832875056284 18.722850022608334 37 17.57950754253516 30.96133833818872 28.944919329138806 22.514234790137312 38 18.656905130540803 33.807544321265844 29.1238588901517 18.411691658041658 39 21.188098521574744 29.084517568226875 29.89038013023529 19.837003779963094 40 22.5884521704471 28.946752437328847 31.584877139448768 16.879918252775276 41 21.797724501700092 27.017711585337768 33.13385356003711 18.05071035292503 42 19.108695795225835 32.48700138282161 31.588590358602964 16.815712463349584 43 16.347329819405942 32.92600729295043 32.68643415334373 18.040228734299898 44 16.260844715055082 32.04710241998483 31.488051424795096 20.204001440164998 45 16.69190715636037 32.5801138783211 31.273248747141057 19.454730218177477 46 18.444234916325584 28.386835074631072 31.509044282295168 21.659885726748175 47 21.787524899719582 28.772090128759398 30.304427567315024 19.135957404205996 48 16.90929498659011 30.544517737436866 30.333240267840605 22.21294700813242 49 19.9430420383411 28.75183193312069 30.696336697791903 20.608789330746298 50 16.825731962794464 33.49997391344811 29.2632828726981 20.411011251059325 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 15.0 1 18.5 2 22.0 3 102.0 4 182.0 5 202.5 6 223.0 7 235.0 8 247.0 9 391.5 10 536.0 11 801.0 12 1066.0 13 2010.5 14 2955.0 15 4153.5 16 5352.0 17 7116.5 18 8881.0 19 10162.0 20 11443.0 21 13773.0 22 16103.0 23 18358.5 24 20614.0 25 27574.0 26 34534.0 27 49873.0 28 65212.0 29 83699.5 30 102187.0 31 122834.0 32 143481.0 33 178898.5 34 214316.0 35 250365.5 36 286415.0 37 282905.0 38 279395.0 39 249215.0 40 219035.0 41 193104.5 42 167174.0 43 143749.0 44 120324.0 45 110230.5 46 100137.0 47 91386.0 48 82635.0 49 72514.5 50 62394.0 51 57086.0 52 51778.0 53 44996.5 54 38215.0 55 32902.5 56 27590.0 57 24761.5 58 21933.0 59 17843.5 60 13754.0 61 11503.5 62 9253.0 63 7732.0 64 6211.0 65 5281.5 66 4352.0 67 3694.0 68 3036.0 69 2642.5 70 2249.0 71 1894.5 72 1540.0 73 1269.0 74 998.0 75 870.0 76 742.0 77 584.5 78 427.0 79 340.0 80 253.0 81 192.0 82 131.0 83 109.0 84 87.0 85 70.5 86 54.0 87 39.5 88 25.0 89 19.5 90 14.0 91 10.0 92 6.0 93 3.5 94 1.0 95 1.0 96 1.0 97 3.0 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.016215957065786022 2 0.005264310699617491 3 5.170305151410036E-4 4 1.880110964149104E-4 5 4.70027741037276E-5 6 7.050416115559141E-4 7 4.70027741037276E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 9.40055482074552E-5 47 0.0 48 0.0 49 0.0 50 4.70027741037276E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2127534.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.29216240425682 #Duplication Level Percentage of deduplicated Percentage of total 1 81.11061867438875 46.470027378028256 2 12.294046838722338 14.087050561792406 3 3.172118630083609 5.452126071609563 4 1.1437191803996953 2.621045801132914 5 0.5671187048215491 1.6245728469563985 6 0.3424058284448229 1.1770302198854936 7 0.21864353522627863 0.876859265017736 8 0.1624336630760233 0.7444940643895889 9 0.11568535366483439 0.5965077662963619 >10 0.7200847707178925 7.758376515430039 >50 0.0720801092655934 2.904438947088241 >100 0.06932829687198186 8.069724161323844 >500 0.007838446197882798 3.152788717315586 >1k 0.0035479282790416814 3.2421795781663763 >5k 3.3003983991085404E-4 1.2227781055671663 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 7926 0.37254398754614493 No Hit GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA 6358 0.2988436377515001 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 5804 0.272804100898035 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 5779 0.27162903154544177 No Hit CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA 4073 0.19144229892448253 No Hit ATTTAGAAATGTCCACTGTAGGACGTGGAATATGGCAAGAAAACTGAAAA 3272 0.1537930768673967 No Hit GTCCTTCAGTGTGCATTTCTCATTTTTCACGTTTTTTAGTGATTTCGTCA 2558 0.12023309615733521 No Hit GTCCTACAGTGTGCATTTCTCATTTTTCACGTTTTTCAGTGATTTCGTCA 2420 0.1137467133310208 No Hit TTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCT 2311 0.10862341095371449 No Hit GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG 2174 0.10218403090150381 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 4.70027741037276E-5 0.0 8 0.0 0.0 0.0 4.70027741037276E-5 0.0 9 0.0 0.0 0.0 4.70027741037276E-5 0.0 10 0.0 0.0 0.0 4.70027741037276E-5 0.0 11 0.0 0.0 0.0 4.70027741037276E-5 0.0 12 0.0 0.0 0.0 4.70027741037276E-5 0.0 13 0.0 0.0 0.0 4.70027741037276E-5 0.0 14 0.0 0.0 0.0 4.70027741037276E-5 0.0 15 0.0 0.0 0.0 4.70027741037276E-5 0.0 16 0.0 0.0 0.0 4.70027741037276E-5 0.0 17 0.0 0.0 0.0 4.70027741037276E-5 0.0 18 0.0 0.0 0.0 4.70027741037276E-5 0.0 19 0.0 0.0 0.0 9.40055482074552E-5 0.0 20 4.70027741037276E-5 0.0 0.0 2.8201664462236564E-4 0.0 21 4.70027741037276E-5 0.0 0.0 5.640332892447313E-4 0.0 22 4.70027741037276E-5 0.0 0.0 9.40055482074552E-4 0.0 23 4.70027741037276E-5 0.0 0.0 0.0019271137382528317 0.0 24 9.40055482074552E-5 0.0 0.0 0.003055180316742294 0.0 25 9.40055482074552E-5 0.0 0.0 0.004183246895231757 0.0 26 9.40055482074552E-5 0.0 0.0 0.005593330118343585 0.0 27 9.40055482074552E-5 0.0 0.0 0.006956410567351685 0.0 28 9.40055482074552E-5 4.70027741037276E-5 0.0 0.013066771200836273 0.0 29 9.40055482074552E-5 4.70027741037276E-5 0.0 0.022608334343892977 0.0 30 9.40055482074552E-5 4.70027741037276E-5 0.0 0.04653274636269033 0.0 31 9.40055482074552E-5 4.70027741037276E-5 0.0 0.11463976603899162 0.0 32 9.40055482074552E-5 4.70027741037276E-5 0.0 0.20465007844762997 0.0 33 9.40055482074552E-5 4.70027741037276E-5 0.0 0.2937203353741938 0.0 34 9.40055482074552E-5 4.70027741037276E-5 0.0 0.3983015077549877 0.0 35 9.40055482074552E-5 4.70027741037276E-5 0.0 0.5096980823808221 0.0 36 9.40055482074552E-5 4.70027741037276E-5 0.0 0.6684264505291102 0.0 37 9.40055482074552E-5 4.70027741037276E-5 0.0 0.9249205888131518 0.0 38 9.40055482074552E-5 4.70027741037276E-5 0.0 1.249615752321702 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTGTCG 25 0.0023532552 35.199814 8 GCGACGA 55 4.9635837E-6 27.99985 20 TAGGACC 3025 0.0 24.727139 4 TGTCCGC 90 1.5141268E-8 24.444315 10 GTCCGCT 85 2.3545181E-7 23.293993 11 GGCGACG 60 2.873875E-4 21.999884 19 TGTAGGA 9555 0.0 21.252087 2 CTGTAGG 9270 0.0 21.173729 1 GGACGTC 75 5.475366E-5 20.533224 6 AGGACCT 6175 0.0 20.414467 5 GTAGGAC 10060 0.0 20.09731 3 GTCCTAT 430 0.0 19.957603 1 GGACCTG 6145 0.0 19.941309 6 TAGGACA 2240 0.0 19.544538 4 TTAGGAC 5720 0.0 19.422974 3 TAGGACG 10395 0.0 19.343813 4 GCGACAA 80 8.993035E-5 19.249897 20 CGACGAA 80 8.993035E-5 19.249897 21 GACGTGT 115 2.0233165E-7 19.130333 7 AGGACGT 10330 0.0 19.124777 5 >>END_MODULE