##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062458_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1960067 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.268323480778974 32.0 32.0 32.0 32.0 32.0 2 31.3706541664137 32.0 32.0 32.0 32.0 32.0 3 31.475409258969208 32.0 32.0 32.0 32.0 32.0 4 31.588499270688196 32.0 32.0 32.0 32.0 32.0 5 31.503935834846462 32.0 32.0 32.0 32.0 32.0 6 35.10441326750565 36.0 36.0 36.0 36.0 36.0 7 35.119790803069485 36.0 36.0 36.0 36.0 36.0 8 35.05405835616844 36.0 36.0 36.0 36.0 36.0 9 35.208643378006975 36.0 36.0 36.0 36.0 36.0 10 35.06177799024217 36.0 36.0 36.0 36.0 36.0 11 35.20770361421319 36.0 36.0 36.0 36.0 36.0 12 35.11314460168963 36.0 36.0 36.0 36.0 36.0 13 35.1670682685847 36.0 36.0 36.0 36.0 36.0 14 35.127999195945854 36.0 36.0 36.0 36.0 36.0 15 35.081562518015964 36.0 36.0 36.0 36.0 36.0 16 35.096082429835306 36.0 36.0 36.0 36.0 36.0 17 35.07507243374844 36.0 36.0 36.0 36.0 36.0 18 35.08501342045961 36.0 36.0 36.0 36.0 36.0 19 35.0685221474572 36.0 36.0 36.0 36.0 36.0 20 35.05919695602242 36.0 36.0 36.0 36.0 36.0 21 35.0586653415419 36.0 36.0 36.0 36.0 36.0 22 35.039365491077604 36.0 36.0 36.0 36.0 36.0 23 35.00338763930009 36.0 36.0 36.0 36.0 36.0 24 34.98208734701416 36.0 36.0 36.0 36.0 36.0 25 34.956385164384685 36.0 36.0 36.0 32.0 36.0 26 34.91511208545422 36.0 36.0 36.0 32.0 36.0 27 34.89818766399312 36.0 36.0 36.0 32.0 36.0 28 34.88323664446165 36.0 36.0 36.0 32.0 36.0 29 34.868610613820856 36.0 36.0 36.0 32.0 36.0 30 34.84932096708939 36.0 36.0 36.0 32.0 36.0 31 34.84186611988264 36.0 36.0 36.0 32.0 36.0 32 34.810754428292505 36.0 36.0 36.0 32.0 36.0 33 34.79172038506847 36.0 36.0 36.0 32.0 36.0 34 34.78142532882804 36.0 36.0 36.0 32.0 36.0 35 34.74920500166576 36.0 36.0 36.0 32.0 36.0 36 34.72417422465661 36.0 36.0 36.0 32.0 36.0 37 34.72162431182199 36.0 36.0 36.0 32.0 36.0 38 34.67778958576416 36.0 36.0 36.0 32.0 36.0 39 34.67449326987292 36.0 36.0 36.0 32.0 36.0 40 34.66398801673616 36.0 36.0 36.0 32.0 36.0 41 34.627016831567495 36.0 36.0 36.0 32.0 36.0 42 34.609624568956065 36.0 36.0 36.0 32.0 36.0 43 34.603623243491164 36.0 36.0 36.0 32.0 36.0 44 34.5613991766608 36.0 36.0 36.0 32.0 36.0 45 34.52724932362006 36.0 36.0 36.0 32.0 36.0 46 34.528273778396354 36.0 36.0 36.0 32.0 36.0 47 34.50100175147074 36.0 36.0 36.0 32.0 36.0 48 34.46450503987874 36.0 36.0 36.0 32.0 36.0 49 34.443276683909275 36.0 36.0 36.0 32.0 36.0 50 33.931106436667726 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 12.0 21 60.0 22 138.0 23 402.0 24 1090.0 25 2680.0 26 5768.0 27 11213.0 28 18458.0 29 28911.0 30 42674.0 31 62358.0 32 93454.0 33 157940.0 34 350648.0 35 1184257.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.55380659659378 18.25832534344609 11.703879385784752 26.483988674175375 2 16.36742209530554 20.46208375446622 36.648739713600726 26.521754436627514 3 18.383195131147097 24.11156648474963 28.804862730612623 28.70037565349065 4 12.365610324147413 15.71126467744692 36.17395341481022 35.74917158359544 5 14.38889588978336 36.72063250899076 33.55732227520794 15.333149326017937 6 34.46132889128111 35.547369844213556 16.5886161357717 13.402685128733632 7 30.21280916050786 30.57432759917268 20.864501501480053 18.348361738839404 8 28.092458063933528 33.05892094504932 19.46341630158561 19.385204689431536 9 27.500386466380995 14.149057149577029 18.653341952086333 39.69721443195564 10 15.877008285941246 26.60225390254517 31.794627428552186 25.726110382961398 11 37.434281583231595 21.10932942598391 22.323930763591246 19.132458227193254 12 24.568037725241023 23.808216759937288 28.73901759480671 22.88472792001498 13 29.479910635707864 19.424693135489758 25.350613014759187 25.744783214043192 14 23.403128566523492 19.705244769694097 25.09705025389438 31.79457640988803 15 25.093989134044907 27.403553041809285 22.214852859621637 25.287604964524174 16 25.820137781004426 25.744885251371507 23.843317600877928 24.59165936674614 17 23.989333017697863 25.896104571935552 25.36112285957572 24.753439550790866 18 24.919556321289015 24.7310933758897 26.380067620137478 23.969282682683808 19 25.527341667402187 25.14230380900245 25.414794494269838 23.915560029325526 20 25.597849461268417 24.47125531933347 25.15633394164587 24.77456127775224 21 26.556388123467205 24.34687181611649 24.48957101976616 24.607169040650138 22 25.586676373817834 24.726195584130544 24.903995628720853 24.78313241333077 23 24.339474109813594 24.362789639333755 25.60682874616021 25.69090750469244 24 24.770989971261187 25.22240311173036 25.148272992708925 24.85833392429953 25 24.83369190951126 24.687064268721425 25.408774291899206 25.070469529868113 26 24.434572899803936 25.29602304411023 25.824933535435267 24.44447052065057 27 25.231127303301363 25.01756317513636 24.955524479520346 24.795785042041928 28 24.408298287762612 24.800478759144458 25.794475392933 24.996747560159932 29 24.490948523698425 25.06562275677311 25.55371831677182 24.88971040275664 30 24.547273128928758 24.972258601364135 25.883349905896075 24.59711836381103 31 24.9229745717876 24.904454796698275 24.920423638579702 25.252146992934428 32 24.578037383415975 25.0239405081561 25.008277778259618 25.389744330168305 33 24.30840374334143 24.63823940712231 25.534382243055976 25.51897460648029 34 24.893791895889272 24.764918750226393 25.874013490355175 24.467275863529157 35 25.647898770807327 24.658085667479735 25.42407989114658 24.269935670566365 36 24.469724759408734 25.111641591843544 25.323930253404605 25.09470339534312 37 25.460150086706218 24.952718452991657 24.816447601025885 24.77068385927624 38 24.49834623000132 24.87047636636911 25.46111944132522 25.170057962304348 39 24.968126089567345 24.742419519332756 24.95317762096908 25.336276770130816 40 25.324542477374496 24.779152957526453 25.574125782434987 24.32217878266406 41 24.375391249380762 25.008226759595466 25.821260191615895 24.795121799407877 42 25.42015145400642 25.268115834815852 25.26694240554022 24.044790305637513 43 24.479673398919527 24.471969580631683 25.65907185825791 25.389285162190884 44 24.31059754590022 24.870068217055845 25.4455077300929 25.373826506951037 45 24.370391420293284 25.155364587026874 25.54019837076998 24.934045621909863 46 24.349931609341127 24.655278937462725 25.588259152894576 25.406530300301572 47 24.617780922794985 24.51936591963438 25.87003403455086 24.992819123019775 48 25.020675313649992 25.37693864546467 24.9497593704705 24.652626670414836 49 24.1753470672176 25.193373491824516 25.451119783150272 25.180159657807614 50 24.056294051472783 25.637721198021495 25.16605316660417 25.139931583901554 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 45.0 1 58.0 2 71.0 3 167.0 4 263.0 5 290.5 6 318.0 7 300.5 8 283.0 9 405.0 10 527.0 11 736.0 12 945.0 13 1747.5 14 2550.0 15 3251.0 16 3952.0 17 4650.0 18 5348.0 19 5884.5 20 6421.0 21 7510.0 22 8599.0 23 9320.5 24 10042.0 25 12371.5 26 14701.0 27 18246.0 28 21791.0 29 25004.0 30 28217.0 31 30678.0 32 33139.0 33 38537.5 34 43936.0 35 50883.0 36 57830.0 37 68136.5 38 78443.0 39 83333.5 40 88224.0 41 96572.5 42 104921.0 43 105737.0 44 106553.0 45 116754.0 46 126955.0 47 133988.5 48 141022.0 49 143804.5 50 146587.0 51 141070.5 52 135554.0 53 133330.5 54 131107.0 55 132243.0 56 133379.0 57 130469.5 58 127560.0 59 116323.0 60 105086.0 61 93018.0 62 80950.0 63 70939.5 64 60929.0 65 52177.0 66 43425.0 67 38788.5 68 34152.0 69 31290.5 70 28429.0 71 22188.5 72 15948.0 73 14160.5 74 12373.0 75 9242.0 76 6111.0 77 5445.5 78 4780.0 79 4117.5 80 3455.0 81 2721.0 82 1987.0 83 1745.5 84 1504.0 85 1231.5 86 959.0 87 708.5 88 458.0 89 307.5 90 157.0 91 96.5 92 36.0 93 27.5 94 19.0 95 16.0 96 13.0 97 10.0 98 7.0 99 6.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015203561919056849 2 0.0038774184760010755 3 8.162986265265422E-4 4 1.0203732831581777E-4 5 0.0 6 6.122239698949066E-4 7 5.1018664157908884E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.0407465663163554E-4 47 0.0 48 0.0 49 0.0 50 1.0203732831581777E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1960067.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.101761266193805 #Duplication Level Percentage of deduplicated Percentage of total 1 80.01671764337102 44.89078790532839 2 12.492121413321485 14.016600264769389 3 3.4330662454282748 5.778031887361362 4 1.3407536043544193 3.0087455451312204 5 0.7014195891899426 1.9675437170082948 6 0.4192728102515692 1.4113165863683825 7 0.27571680968525647 1.0827739043827194 8 0.20766787382985796 0.9320426784208597 9 0.1470053105192511 0.7422531152052342 >10 0.7981516659497864 8.21054856885787 >50 0.07969159311848831 3.148281266752748 >100 0.07609892429489386 9.066792986748135 >500 0.009670746434778171 3.6634132831401516 >1k 0.002645770251024217 2.0808682905253706 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2014 0.1027515896140285 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5305599247372666E-4 2 0.0 0.0 0.0 0.0 1.5305599247372666E-4 3 0.0 0.0 0.0 0.0 1.5305599247372666E-4 4 0.0 0.0 0.0 0.0 1.5305599247372666E-4 5 0.0 0.0 0.0 0.0 2.0407465663163556E-4 6 0.0 0.0 0.0 0.0 2.0407465663163556E-4 7 0.0 0.0 0.0 5.101866415790889E-5 2.0407465663163556E-4 8 0.0 0.0 0.0 5.101866415790889E-5 2.0407465663163556E-4 9 0.0 0.0 0.0 5.101866415790889E-5 2.0407465663163556E-4 10 0.0 0.0 0.0 2.0407465663163556E-4 2.0407465663163556E-4 11 0.0 0.0 0.0 2.0407465663163556E-4 2.0407465663163556E-4 12 0.0 0.0 0.0 2.0407465663163556E-4 5.101866415790888E-4 13 0.0 0.0 0.0 2.0407465663163556E-4 5.101866415790888E-4 14 0.0 0.0 0.0 2.0407465663163556E-4 5.101866415790888E-4 15 0.0 0.0 0.0 2.0407465663163556E-4 7.142612982107244E-4 16 0.0 0.0 0.0 2.550933207895444E-4 7.142612982107244E-4 17 0.0 0.0 0.0 2.550933207895444E-4 7.652799623686334E-4 18 0.0 0.0 0.0 2.550933207895444E-4 8.162986265265423E-4 19 0.0 0.0 0.0 3.571306491053622E-4 8.162986265265423E-4 20 0.0 0.0 0.0 7.142612982107244E-4 9.1833595484236E-4 21 0.0 0.0 0.0 8.673172906844511E-4 9.1833595484236E-4 22 0.0 0.0 0.0 0.0011734292756319044 9.1833595484236E-4 23 0.0 0.0 0.0 0.0019897279021584466 9.693546190002689E-4 24 0.0 0.0 0.0 0.003265194506106169 9.693546190002689E-4 25 0.0 0.0 0.0 0.003979455804316893 9.693546190002689E-4 26 0.0 0.0 0.0 0.004846773095001344 9.693546190002689E-4 27 0.0 0.0 0.0 0.0069895569896335176 9.693546190002689E-4 28 0.0 0.0 0.0 0.01234651672621395 9.693546190002689E-4 29 0.0 0.0 0.0 0.02209108158037455 9.693546190002689E-4 30 0.0 0.0 0.0 0.04071289399801129 9.693546190002689E-4 31 0.0 0.0 0.0 0.08683376639676092 9.693546190002689E-4 32 0.0 0.0 0.0 0.13871974784535426 9.693546190002689E-4 33 0.0 0.0 0.0 0.1917791585695795 9.693546190002689E-4 34 0.0 0.0 0.0 0.25182812628343826 0.0010203732831581777 35 0.0 0.0 0.0 0.32253999480629997 0.0010203732831581777 36 0.0 0.0 0.0 0.42666908835259204 0.0010203732831581777 37 0.0 5.101866415790889E-5 0.0 0.5741640464331066 0.0010203732831581777 38 0.0 5.101866415790889E-5 0.0 0.7748204525661623 0.0010713919473160866 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAACGG 325 0.0 20.307621 35 TAACGGC 345 0.0 19.768047 36 CGCAATA 525 0.0 18.018986 36 ATACCGT 520 0.0 17.769169 6 GTATCAA 3685 0.0 17.674284 1 ACCGATA 75 0.0012912891 17.599937 36 ACCGTCG 510 0.0 17.254843 8 TCCTACA 765 0.0 17.25484 2 CCGTCGT 500 0.0 17.15994 9 CGTCGTA 490 0.0 17.061165 10 TACCGTC 530 0.0 17.01881 7 TAGGACG 495 0.0 16.88883 4 ATTGTCG 355 0.0 16.732336 43 GTCGTAA 370 0.0 16.648592 30 ATACGAA 575 0.0 16.452118 40 GTCCTAC 810 0.0 16.298735 1 CTAGCGG 575 0.0 16.06951 29 TAGATTG 125 9.446489E-6 15.839945 5 TCTAGCG 590 0.0 15.660962 28 CAATACG 610 0.0 15.508143 38 >>END_MODULE