##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062456_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1817252 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28080695467662 32.0 32.0 32.0 32.0 32.0 2 31.40676582004037 32.0 32.0 32.0 32.0 32.0 3 31.481859422908876 32.0 32.0 32.0 32.0 32.0 4 31.588607964112846 32.0 32.0 32.0 32.0 32.0 5 31.521042761268113 32.0 32.0 32.0 32.0 32.0 6 35.102880613145565 36.0 36.0 36.0 36.0 36.0 7 35.1192146163548 36.0 36.0 36.0 36.0 36.0 8 35.05865614675345 36.0 36.0 36.0 36.0 36.0 9 35.193269838195256 36.0 36.0 36.0 36.0 36.0 10 35.05737839331034 36.0 36.0 36.0 36.0 36.0 11 35.19623310360919 36.0 36.0 36.0 36.0 36.0 12 35.09659474855441 36.0 36.0 36.0 36.0 36.0 13 35.144636517114854 36.0 36.0 36.0 36.0 36.0 14 35.106297860725974 36.0 36.0 36.0 36.0 36.0 15 35.06998203881465 36.0 36.0 36.0 36.0 36.0 16 35.081335444946546 36.0 36.0 36.0 36.0 36.0 17 35.05225032081407 36.0 36.0 36.0 36.0 36.0 18 35.067524482020104 36.0 36.0 36.0 36.0 36.0 19 35.04602443689703 36.0 36.0 36.0 36.0 36.0 20 35.03847952843084 36.0 36.0 36.0 36.0 36.0 21 35.03970170345114 36.0 36.0 36.0 36.0 36.0 22 35.018121317241636 36.0 36.0 36.0 36.0 36.0 23 34.98501803822475 36.0 36.0 36.0 36.0 36.0 24 34.950591882688805 36.0 36.0 36.0 32.0 36.0 25 34.92770402783984 36.0 36.0 36.0 32.0 36.0 26 34.88885526058026 36.0 36.0 36.0 32.0 36.0 27 34.872131658129966 36.0 36.0 36.0 32.0 36.0 28 34.8503036452842 36.0 36.0 36.0 32.0 36.0 29 34.83182354456069 36.0 36.0 36.0 32.0 36.0 30 34.821215219463234 36.0 36.0 36.0 32.0 36.0 31 34.819267223257974 36.0 36.0 36.0 32.0 36.0 32 34.77938667834731 36.0 36.0 36.0 32.0 36.0 33 34.7584627778646 36.0 36.0 36.0 32.0 36.0 34 34.739190822186465 36.0 36.0 36.0 32.0 36.0 35 34.71528439644034 36.0 36.0 36.0 32.0 36.0 36 34.68739613438312 36.0 36.0 36.0 32.0 36.0 37 34.68192303544033 36.0 36.0 36.0 32.0 36.0 38 34.63977973335564 36.0 36.0 36.0 32.0 36.0 39 34.64332024397277 36.0 36.0 36.0 32.0 36.0 40 34.63161575829879 36.0 36.0 36.0 32.0 36.0 41 34.59442774034641 36.0 36.0 36.0 32.0 36.0 42 34.56727410397677 36.0 36.0 36.0 32.0 36.0 43 34.56415455864129 36.0 36.0 36.0 32.0 36.0 44 34.525649166983996 36.0 36.0 36.0 32.0 36.0 45 34.48095916251571 36.0 36.0 36.0 32.0 36.0 46 34.48815519256548 36.0 36.0 36.0 32.0 36.0 47 34.45719691050003 36.0 36.0 36.0 32.0 36.0 48 34.407515853607535 36.0 36.0 36.0 32.0 36.0 49 34.39810934311807 36.0 36.0 36.0 32.0 36.0 50 33.86486023952649 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 9.0 21 45.0 22 150.0 23 452.0 24 1291.0 25 2953.0 26 6152.0 27 11099.0 28 18831.0 29 28756.0 30 41235.0 31 58687.0 32 86945.0 33 143273.0 34 317166.0 35 1100203.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.507219337422505 18.206929573278956 11.67097322777443 26.61487786152411 2 16.693750711953612 20.657193028990477 35.99010116207339 26.658955096982528 3 18.38193618255316 24.2600066254101 28.616874105101896 28.741183086934846 4 12.653742002334297 15.910587927136016 35.711231647396694 35.72443842313299 5 14.747164811025005 36.39612799772844 33.04342658223878 15.813280609007782 6 34.12533808044595 35.474908446577096 16.6737011245044 13.72605234847255 7 30.185593514599802 30.515267291089675 20.808297808062836 18.490841386247688 8 28.498469117106488 31.9695892479414 19.56255929282235 19.969382342129766 9 27.915390930922072 13.92729241734223 18.600887493864363 39.556429157871335 10 16.530728814715843 26.25464162372637 30.713902089528585 26.500727472029194 11 37.79800489970571 20.923900482706856 22.037890177036537 19.240204440550897 12 24.92587709354564 23.770891433879285 28.145738730786924 23.15749274178815 13 29.75971411779984 19.091463374369653 25.165634705588435 25.98318780224207 14 23.991939477848973 19.606251637087208 24.519824438217704 31.88198444684612 15 25.783545705273674 26.67522170838167 21.94489261808489 25.59633996825977 16 26.330250289998304 25.341449617334305 23.32235705339711 25.005943039270285 17 24.571220722277374 25.30914809833749 24.857972367068516 25.261658812316618 18 25.455963179570034 24.26036675155675 25.869884859116954 24.41378520975627 19 26.065564929905154 24.599725299518173 25.069170373729126 24.26553939684755 20 26.18112402682732 23.80055160208931 24.60313704428445 25.41518732679893 21 27.494425649277037 23.72510802024155 23.90895704063058 24.87150928985083 22 26.334322372461276 23.970808671554632 24.38753678631252 25.30733216967157 23 24.86721709482229 23.702601510412425 25.1982663934336 26.23191500133168 24 25.10400318722995 24.74054231333904 24.71897128191357 25.436483217517434 25 25.26000796807487 24.046362309685172 25.024982776191745 25.668646946048206 26 24.895501559497525 24.82539570736475 25.39449674563572 24.88460598750201 27 25.878304164749856 24.36161853171712 24.39056333408905 25.369513969443975 28 24.82071831534647 24.358096730668063 25.462566556537013 25.358618397448456 29 24.91377090243951 24.512945920543768 25.093272699658602 25.48001047735812 30 24.90414097769599 24.677094866314633 25.434557232568732 24.984206923420636 31 25.4769289014402 24.438492845241054 24.318916693997313 25.765661559321433 32 25.18682054002417 24.42115898070273 24.458027835435043 25.93399264383806 33 24.930499457422524 23.954190172854396 25.022121312839385 26.09318905688369 34 25.38283077966072 24.273518477349317 25.318392826091262 25.025257916898703 35 26.258493593623776 23.949787921543077 25.00808913678455 24.783629348048592 36 24.91465135270177 24.684083440271355 24.75022726622395 25.65103794080293 37 26.068151252550553 24.476462262801196 24.35908723721311 25.096299247435137 38 25.01419726047901 24.173312231875382 25.15149247325082 25.660998034394787 39 25.479845392933946 24.140185290757692 24.494291380612047 25.885677935696314 40 25.782830339435588 24.3021331108729 25.094373262486435 24.82066328720508 41 24.57193608811546 24.709011188321707 25.521281583401752 25.19777114016108 42 25.956554181808578 24.770642706680196 24.94744812497111 24.325354986540116 43 24.99367176373998 23.768635280082233 25.238822133639143 25.998870822538645 44 24.730692276029963 24.33245361677962 24.93022431671557 26.00662979047485 45 24.836786532632786 24.613317250441877 25.056403844926294 25.49349237199904 46 24.619659034442684 24.238754030125722 25.217595147835937 25.923991787595657 47 24.91789801304387 24.091265273060642 25.59633996825977 25.39449674563572 48 25.47555319790541 24.84184912164081 24.639950870875367 25.042646809578418 49 24.449388417236577 24.781538278675715 25.14455892743549 25.62451437665222 50 24.313495666529096 25.18602283670381 24.830100426468565 25.670381070298525 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 14.0 1 17.0 2 20.0 3 86.5 4 153.0 5 184.0 6 215.0 7 218.0 8 221.0 9 315.0 10 409.0 11 581.5 12 754.0 13 1403.5 14 2053.0 15 2956.0 16 3859.0 17 4689.5 18 5520.0 19 5908.5 20 6297.0 21 7109.5 22 7922.0 23 8515.0 24 9108.0 25 10717.5 26 12327.0 27 15099.0 28 17871.0 29 20709.5 30 23548.0 31 25387.5 32 27227.0 33 31519.0 34 35811.0 35 41896.5 36 47982.0 37 57533.5 38 67085.0 39 72629.0 40 78173.0 41 85587.5 42 93002.0 43 93918.0 44 94834.0 45 104087.0 46 113340.0 47 119954.0 48 126568.0 49 130233.0 50 133898.0 51 128838.0 52 123778.0 53 121402.0 54 119026.0 55 121865.5 56 124705.0 57 123048.0 58 121391.0 59 111211.0 60 101031.0 61 89555.5 62 78080.0 63 69970.5 64 61861.0 65 53582.0 66 45303.0 67 41718.0 68 38133.0 69 35316.5 70 32500.0 71 26346.0 72 20192.0 73 17924.5 74 15657.0 75 11970.0 76 8283.0 77 7490.0 78 6697.0 79 5805.0 80 4913.0 81 3862.0 82 2811.0 83 2508.0 84 2205.0 85 1828.5 86 1452.0 87 1078.0 88 704.0 89 458.0 90 212.0 91 132.5 92 53.0 93 39.0 94 25.0 95 20.0 96 15.0 97 13.5 98 12.0 99 7.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014142232337617456 2 0.0037969417560140255 3 3.301688483490457E-4 4 1.6508442417452284E-4 5 5.5028141391507615E-5 6 3.851969897405533E-4 7 5.5028141391507615E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 5.5028141391507615E-5 47 0.0 48 0.0 49 0.0 50 1.1005628278301523E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1817252.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.562172997751055 #Duplication Level Percentage of deduplicated Percentage of total 1 80.09716659959335 42.10081127437513 2 12.285913639109838 12.91548636268641 3 3.2879514092808293 5.18465612348455 4 1.356302504759139 2.8516082756973176 5 0.7157489303557744 1.8810659550157742 6 0.42446733517498175 1.3386555302017065 7 0.2891646673918089 1.0639386290599784 8 0.22845719829323882 0.9606565423416589 9 0.16001973567876482 0.7569886526821469 >10 0.9415353906541163 9.226447931461227 >50 0.0994778206448232 3.672653314568601 >100 0.09800518183966263 10.908317710554583 >500 0.012105350204831429 4.342385986607086 >1k 0.0036842370188617394 2.796327711263868 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2259 0.1243085714034157 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2030 0.11170712702476046 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1946 0.10708476314787382 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1943 0.1069196787236993 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1918 0.1055439751889116 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1871 0.10295765254351075 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.5028141391507615E-5 2 0.0 0.0 0.0 0.0 5.5028141391507615E-5 3 0.0 0.0 0.0 0.0 5.5028141391507615E-5 4 0.0 0.0 0.0 0.0 5.5028141391507615E-5 5 0.0 0.0 0.0 0.0 5.5028141391507615E-5 6 0.0 0.0 0.0 0.0 5.5028141391507615E-5 7 0.0 0.0 0.0 0.0 5.5028141391507615E-5 8 0.0 0.0 0.0 0.0 5.5028141391507615E-5 9 0.0 0.0 0.0 0.0 5.5028141391507615E-5 10 0.0 0.0 0.0 0.0 5.5028141391507615E-5 11 0.0 0.0 0.0 0.0 5.5028141391507615E-5 12 0.0 0.0 0.0 0.0 1.1005628278301523E-4 13 0.0 0.0 0.0 0.0 1.1005628278301523E-4 14 0.0 0.0 0.0 1.1005628278301523E-4 1.1005628278301523E-4 15 0.0 0.0 0.0 1.1005628278301523E-4 1.6508442417452284E-4 16 0.0 0.0 0.0 1.1005628278301523E-4 1.6508442417452284E-4 17 0.0 0.0 0.0 2.2011256556603046E-4 1.6508442417452284E-4 18 0.0 0.0 0.0 3.851969897405533E-4 1.6508442417452284E-4 19 0.0 0.0 0.0 3.851969897405533E-4 1.6508442417452284E-4 20 0.0 0.0 0.0 6.053095553065838E-4 1.6508442417452284E-4 21 0.0 0.0 0.0 6.603376966980914E-4 1.6508442417452284E-4 22 0.0 0.0 0.0 9.354784036556295E-4 1.6508442417452284E-4 23 0.0 0.0 0.0 0.001870956807311259 2.2011256556603046E-4 24 0.0 0.0 0.0 0.0030815759179244266 2.2011256556603046E-4 25 0.0 0.0 0.0 0.003741913614622518 2.2011256556603046E-4 26 0.0 0.0 0.0 0.00462236387688664 2.751407069575381E-4 27 0.0 0.0 0.0 0.006053095553065838 3.301688483490457E-4 28 0.0 0.0 0.0 0.013041669509787305 3.301688483490457E-4 29 0.0 0.0 0.0 0.02657859229209818 3.301688483490457E-4 30 0.0 0.0 0.0 0.055303282098465155 3.301688483490457E-4 31 0.0 0.0 0.0 0.11660463160860464 3.851969897405533E-4 32 0.0 0.0 0.0 0.19127781947688047 3.851969897405533E-4 33 0.0 0.0 0.0 0.26127361532687815 3.851969897405533E-4 34 0.0 0.0 0.0 0.3472826003218046 3.851969897405533E-4 35 0.0 0.0 0.0 0.4429765382016363 3.851969897405533E-4 36 0.0 0.0 0.0 0.578125653459179 3.851969897405533E-4 37 0.0 0.0 0.0 0.7708892327536302 3.851969897405533E-4 38 0.0 0.0 0.0 1.0230281766095182 3.851969897405533E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 245 0.0 18.857048 4 CGGATCG 120 3.164314E-7 18.33324 26 TGGTCGG 730 0.0 18.082102 37 GTCGGAA 745 0.0 18.013334 39 GTATCAA 4235 0.0 17.769567 1 CGTTTAT 740 0.0 17.540453 31 ATCGTTT 770 0.0 16.571344 29 GGTCGGA 800 0.0 16.499918 38 TACATCG 80 0.0019889355 16.499918 5 CGAATTA 80 0.0019889355 16.499918 41 CATCGTT 790 0.0 16.430298 28 TCGATTT 135 1.0862386E-6 16.296213 30 CGCAATA 720 0.0 16.194365 36 ATTTCGT 205 1.05501385E-10 16.09748 42 GTTCAAA 865 0.0 16.026129 1 TATGGTC 855 0.0 15.9531355 35 ATTACAC 235 3.6379788E-12 15.914813 3 ATAATAC 125 9.445865E-6 15.83992 3 ATGGTCG 820 0.0 15.829189 36 GCATCGT 820 0.0 15.829189 27 >>END_MODULE