##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062452_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1877213 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.233823226240176 32.0 32.0 32.0 32.0 32.0 2 31.408168385793193 32.0 32.0 32.0 32.0 32.0 3 31.48805702922364 32.0 32.0 32.0 32.0 32.0 4 31.594662939155015 32.0 32.0 32.0 32.0 32.0 5 31.52569420731691 32.0 32.0 32.0 32.0 32.0 6 35.10842509613986 36.0 36.0 36.0 36.0 36.0 7 35.122182725135616 36.0 36.0 36.0 36.0 36.0 8 35.06296195477018 36.0 36.0 36.0 36.0 36.0 9 35.195909574459584 36.0 36.0 36.0 36.0 36.0 10 35.07067818089902 36.0 36.0 36.0 36.0 36.0 11 35.196472643221625 36.0 36.0 36.0 36.0 36.0 12 35.09915923233005 36.0 36.0 36.0 36.0 36.0 13 35.149254772900036 36.0 36.0 36.0 36.0 36.0 14 35.107670786426475 36.0 36.0 36.0 36.0 36.0 15 35.07308121134895 36.0 36.0 36.0 36.0 36.0 16 35.08444699669137 36.0 36.0 36.0 36.0 36.0 17 35.05385483693113 36.0 36.0 36.0 36.0 36.0 18 35.0671868349516 36.0 36.0 36.0 36.0 36.0 19 35.04884581557873 36.0 36.0 36.0 36.0 36.0 20 35.037737326558045 36.0 36.0 36.0 36.0 36.0 21 35.02900842898488 36.0 36.0 36.0 36.0 36.0 22 35.01426210025181 36.0 36.0 36.0 36.0 36.0 23 34.9814006188962 36.0 36.0 36.0 36.0 36.0 24 34.959477693793936 36.0 36.0 36.0 32.0 36.0 25 34.93658577902454 36.0 36.0 36.0 32.0 36.0 26 34.89464860940128 36.0 36.0 36.0 32.0 36.0 27 34.87923639991839 36.0 36.0 36.0 32.0 36.0 28 34.86452309887051 36.0 36.0 36.0 32.0 36.0 29 34.84054659753581 36.0 36.0 36.0 32.0 36.0 30 34.82873227492032 36.0 36.0 36.0 32.0 36.0 31 34.82803762812212 36.0 36.0 36.0 32.0 36.0 32 34.78781949624257 36.0 36.0 36.0 32.0 36.0 33 34.76245157049306 36.0 36.0 36.0 32.0 36.0 34 34.746522637548324 36.0 36.0 36.0 32.0 36.0 35 34.718810278854875 36.0 36.0 36.0 32.0 36.0 36 34.68570055715574 36.0 36.0 36.0 32.0 36.0 37 34.676575860064894 36.0 36.0 36.0 32.0 36.0 38 34.64056076747817 36.0 36.0 36.0 32.0 36.0 39 34.63774116203116 36.0 36.0 36.0 32.0 36.0 40 34.622455203538436 36.0 36.0 36.0 32.0 36.0 41 34.581324015974744 36.0 36.0 36.0 32.0 36.0 42 34.548342676084175 36.0 36.0 36.0 32.0 36.0 43 34.548021987915064 36.0 36.0 36.0 32.0 36.0 44 34.49939351581307 36.0 36.0 36.0 32.0 36.0 45 34.45772802553573 36.0 36.0 36.0 32.0 36.0 46 34.45619383628816 36.0 36.0 36.0 32.0 36.0 47 34.411215456104344 36.0 36.0 36.0 32.0 36.0 48 34.36715545865067 36.0 36.0 36.0 32.0 36.0 49 34.34594902123521 36.0 36.0 36.0 32.0 36.0 50 33.83708668115978 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 2.0 20 9.0 21 46.0 22 154.0 23 482.0 24 1340.0 25 3023.0 26 6525.0 27 11832.0 28 20015.0 29 30281.0 30 43224.0 31 60859.0 32 90015.0 33 146228.0 34 324490.0 35 1138686.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.4267520403042 18.584909580878524 11.62070321365893 26.367635165158347 2 16.536326122695556 20.870380058109863 35.90942362132911 26.683870197865467 3 18.135898849619515 24.653673946106046 28.90392897952008 28.306498224754357 4 12.388904396519946 15.862513131175382 36.16197850855418 35.5866039637505 5 14.643410204382773 36.557385869371245 33.03061506605803 15.768588860187949 6 33.845869462034166 35.74944824768365 16.79670956919371 13.607972721088471 7 29.879028112419846 30.728319055962217 21.10692819621428 18.285724635403653 8 28.45729280587765 31.854616391427076 19.817942875954937 19.870147926740334 9 27.91441354816955 13.758800945870286 18.9935825076856 39.33320299827457 10 16.363406816381517 26.145408112984512 31.092156297660416 26.399028772973555 11 37.537349251257055 21.171278911876275 22.239937609637263 19.051434227229407 12 24.800595350660792 23.972399509272524 28.230307375881157 22.996697764185527 13 29.3624111914844 19.276288838826495 25.53189222533618 25.829407744352935 14 23.89877973357312 19.743044609215897 24.957583396236867 31.400592260974115 15 25.643653650384906 26.649666287203424 22.357558785284354 25.349121277127317 16 26.130279302348747 25.541907071813373 23.459671331915985 24.868142293921895 17 24.103125218075945 25.413099099569415 25.171357752157054 25.312417930197583 18 25.126237672549678 24.32494341345388 26.285775775045238 24.2630431389512 19 25.677586933395414 24.80203365308039 25.5421734241133 23.9782059894109 20 25.870639080381398 23.857708208924613 25.000039952844986 25.271612757849006 21 27.299033194421728 23.779933337346375 24.395739854774074 24.525293613457823 22 25.930355266024684 24.148831272743156 24.745833317796116 25.174980143436045 23 24.591668606599253 23.800495734900622 25.57919639380294 26.028639264697183 24 24.86734323702212 24.95539930737748 25.027474239737312 25.149783215863092 25 25.021241595919058 24.132210889227807 25.39631890467411 25.450228610179025 26 24.68222838857391 24.93238646866392 25.76154117833192 24.623843964430247 27 25.620960434431257 24.62091408913107 24.79500195236236 24.963123524075318 28 24.503559265783903 24.324890142993898 25.84219265474935 25.329357936472846 29 24.61947578671147 24.65468756076162 25.636835031506816 25.089001621020095 30 24.521777763098807 24.849018198787245 25.925188031406133 24.704016006707814 31 25.027154616977406 24.701139401868623 24.686756377672644 25.584949603481334 32 24.622032768790756 24.703589843027935 24.783495533005578 25.890881855175728 33 24.480280074770416 24.230974322040176 25.414164508769115 25.87458109442029 34 25.161449446599825 24.346091786067962 25.737995635018507 24.7544631323137 35 26.064383743347186 24.210092301726014 25.22952909446078 24.49599486046602 36 24.74807067711549 24.83570058379097 24.965147801554753 25.45108093753879 37 25.85828033366485 24.647442778203647 24.602375969056254 24.891900919075248 38 24.691337637231364 24.365375692582568 25.603487723556146 25.339798946629926 39 25.077495201663318 24.416728416008198 24.80586912619932 25.69990725612917 40 25.361426753383874 24.551236327470562 25.5628956330475 24.52444128609806 41 24.327606936453137 24.947302197459745 25.795953895482292 24.92913697060483 42 25.609081121854576 25.17966794391473 25.1418991877853 24.069351746445395 43 24.73645771683874 24.00217769640419 25.456194901697355 25.805169685059713 44 24.37837368481893 24.562742746827347 25.30346849292009 25.755415075433636 45 24.49024165078763 24.824993221333965 25.372293927220834 25.312471200657573 46 24.330988897891608 24.63521681899371 25.47683771296887 25.556956570145818 47 24.502200338693942 24.328165560504385 25.85154252771798 25.318091573083684 48 25.30213673142046 25.16773536087807 24.818334413835828 24.711793493865642 49 24.177064616535258 25.112813516633437 25.28178741570616 25.42833445112515 50 23.950624649746537 25.437830143851624 25.206156789962986 25.405388416438846 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 20.0 1 29.5 2 39.0 3 106.5 4 174.0 5 226.5 6 279.0 7 293.0 8 307.0 9 441.5 10 576.0 11 820.0 12 1064.0 13 1835.5 14 2607.0 15 3764.5 16 4922.0 17 6145.5 18 7369.0 19 8060.0 20 8751.0 21 9625.5 22 10500.0 23 10860.0 24 11220.0 25 12670.0 26 14120.0 27 16851.5 28 19583.0 29 22302.5 30 25022.0 31 26292.0 32 27562.0 33 32109.5 34 36657.0 35 42420.0 36 48183.0 37 59331.0 38 70479.0 39 76069.0 40 81659.0 41 90125.0 42 98591.0 43 99411.5 44 100232.0 45 109954.5 46 119677.0 47 126718.0 48 133759.0 49 137464.0 50 141169.0 51 134772.0 52 128375.0 53 126105.5 54 123836.0 55 126415.0 56 128994.0 57 126464.0 58 123934.0 59 113547.5 60 103161.0 61 91220.0 62 79279.0 63 69716.5 64 60154.0 65 52136.0 66 44118.0 67 38966.5 68 33815.0 69 31380.5 70 28946.0 71 23247.0 72 17548.0 73 16009.5 74 14471.0 75 10921.5 76 7372.0 77 6597.0 78 5822.0 79 5276.0 80 4730.0 81 3853.0 82 2976.0 83 2701.0 84 2426.0 85 2001.0 86 1576.0 87 1178.0 88 780.0 89 516.0 90 252.0 91 163.5 92 75.0 93 50.0 94 25.0 95 17.0 96 9.0 97 9.5 98 10.0 99 9.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015288622015722245 2 0.004208366338822499 3 4.261636798807594E-4 4 5.3270459985094925E-5 5 0.0 6 6.392455198211391E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.0654091997018985E-4 47 1.0654091997018985E-4 48 0.0 49 0.0 50 5.3270459985094925E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1877213.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.26697174238218 #Duplication Level Percentage of deduplicated Percentage of total 1 77.22036949185134 38.81634131183203 2 13.655777610653 13.728691745498992 3 4.126673630835079 6.223061603736618 4 1.6517051334789663 3.3210486108533916 5 0.8427153359604644 2.1180373989798387 6 0.5178347273635292 1.5617990164564026 7 0.3392535094538609 1.1937272601254851 8 0.2573962250424136 1.0350823016642279 9 0.17180909807460285 0.7772690770200208 >10 1.007128441198617 9.269585437866146 >50 0.09359877239576263 3.281512855757772 >100 0.09717801852079548 10.580724629344965 >500 0.013973337226891732 4.7506188846251245 >1k 0.004586667944704919 3.342499866239045 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2482 0.1322172816830056 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2175 0.11586325046758145 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2162 0.11517073448777523 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2068 0.11016331124917629 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 2059 0.10968387710931045 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2034 0.10835211560968308 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 1960 0.10441010157078605 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1941 0.10339796283106925 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 1924 0.10249236501132264 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0654091997018985E-4 2 0.0 0.0 0.0 0.0 1.0654091997018985E-4 3 0.0 0.0 0.0 0.0 1.0654091997018985E-4 4 0.0 0.0 0.0 0.0 1.0654091997018985E-4 5 0.0 0.0 0.0 0.0 1.0654091997018985E-4 6 0.0 0.0 0.0 0.0 1.0654091997018985E-4 7 0.0 0.0 0.0 5.3270459985094925E-5 1.0654091997018985E-4 8 0.0 0.0 0.0 1.5981137995528478E-4 1.0654091997018985E-4 9 0.0 0.0 0.0 2.130818399403797E-4 1.0654091997018985E-4 10 0.0 0.0 0.0 2.130818399403797E-4 1.0654091997018985E-4 11 0.0 0.0 0.0 2.130818399403797E-4 1.0654091997018985E-4 12 0.0 0.0 0.0 3.7289321989566446E-4 1.5981137995528478E-4 13 0.0 0.0 0.0 3.7289321989566446E-4 1.5981137995528478E-4 14 0.0 0.0 0.0 4.261636798807594E-4 1.5981137995528478E-4 15 0.0 0.0 0.0 4.7943413986585435E-4 2.663522999254746E-4 16 0.0 0.0 0.0 5.859750598360442E-4 2.663522999254746E-4 17 0.0 0.0 0.0 5.859750598360442E-4 2.663522999254746E-4 18 0.0 0.0 0.0 6.925159798062341E-4 2.663522999254746E-4 19 0.0 0.0 0.0 6.925159798062341E-4 2.663522999254746E-4 20 0.0 0.0 0.0 7.457864397913289E-4 2.663522999254746E-4 21 0.0 0.0 0.0 7.990568997764239E-4 3.1962275991056957E-4 22 0.0 0.0 0.0 0.0012784910396422783 3.7289321989566446E-4 23 0.0 0.0 0.0 0.002077547939418702 3.7289321989566446E-4 24 0.0 0.0 0.0 0.0031962275991056954 3.7289321989566446E-4 25 0.0 0.0 0.0 0.0041018254188523095 3.7289321989566446E-4 26 0.0 0.0 0.0 0.005007423238598923 4.261636798807594E-4 27 0.0 0.0 0.0 0.006765348418107056 4.261636798807594E-4 28 0.0 0.0 0.0 0.01512881063576696 4.7943413986585435E-4 29 0.0 0.0 0.0 0.03180246461110167 4.7943413986585435E-4 30 0.0 0.0 0.0 0.06179373358271011 4.7943413986585435E-4 31 0.0 0.0 0.0 0.12934067684381048 4.7943413986585435E-4 32 0.0 0.0 0.0 0.20818095762175096 5.327045998509492E-4 33 0.0 0.0 0.0 0.29245482531817113 5.327045998509492E-4 34 0.0 0.0 0.0 0.3879154896114613 5.859750598360442E-4 35 0.0 0.0 0.0 0.49711993258090587 5.859750598360442E-4 36 0.0 0.0 0.0 0.647076277438948 6.392455198211391E-4 37 0.0 0.0 0.0 0.8610637151990743 6.392455198211391E-4 38 0.0 0.0 0.0 1.1463802988792429 6.392455198211391E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 185 0.0 20.216143 4 TTAACGG 375 0.0 18.773264 35 TAACGGC 420 0.0 16.761845 36 TACCGTC 630 0.0 16.41264 7 GCATTAG 135 1.0844578E-6 16.298841 1 GTATTAG 650 0.0 16.248692 1 GTATCAA 5055 0.0 16.018328 1 CGTCGTA 600 0.0 15.76661 10 ATACCGT 630 0.0 15.714229 6 CTAGATA 465 0.0 15.612847 3 ACGATTA 170 4.494359E-8 15.529356 40 CGCAATA 675 0.0 15.318463 36 GTCCTAT 755 0.0 15.154684 1 GTCGTAG 625 0.0 15.135946 11 TATTAGA 560 0.0 14.928517 2 CCTATTC 870 0.0 14.919486 3 TACGCTA 570 0.0 14.666614 9 CGAGCCG 870 0.0 14.666614 15 AACGCAG 5535 0.0 14.626867 6 ATACGAA 680 0.0 14.558771 40 >>END_MODULE