##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062448_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2085865 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.305755166321887 32.0 32.0 32.0 32.0 32.0 2 31.437980885627784 32.0 32.0 32.0 32.0 32.0 3 31.505563878774513 32.0 32.0 32.0 32.0 32.0 4 31.6046695255925 32.0 32.0 32.0 32.0 32.0 5 31.544915898200507 32.0 32.0 32.0 32.0 32.0 6 35.129034237594475 36.0 36.0 36.0 36.0 36.0 7 35.144445589719375 36.0 36.0 36.0 36.0 36.0 8 35.08768352697802 36.0 36.0 36.0 36.0 36.0 9 35.212142204792734 36.0 36.0 36.0 36.0 36.0 10 35.08461046136735 36.0 36.0 36.0 36.0 36.0 11 35.21194947899313 36.0 36.0 36.0 36.0 36.0 12 35.123201165943144 36.0 36.0 36.0 36.0 36.0 13 35.16939830717712 36.0 36.0 36.0 36.0 36.0 14 35.130227028115435 36.0 36.0 36.0 36.0 36.0 15 35.092897191333094 36.0 36.0 36.0 36.0 36.0 16 35.10922327188001 36.0 36.0 36.0 36.0 36.0 17 35.077675688503334 36.0 36.0 36.0 36.0 36.0 18 35.092555846135774 36.0 36.0 36.0 36.0 36.0 19 35.073924726672146 36.0 36.0 36.0 36.0 36.0 20 35.061817519350484 36.0 36.0 36.0 36.0 36.0 21 35.06917370011961 36.0 36.0 36.0 36.0 36.0 22 35.046606084286374 36.0 36.0 36.0 36.0 36.0 23 35.0159324788517 36.0 36.0 36.0 36.0 36.0 24 34.98714346326344 36.0 36.0 36.0 36.0 36.0 25 34.96962938636968 36.0 36.0 36.0 32.0 36.0 26 34.92230082004348 36.0 36.0 36.0 32.0 36.0 27 34.90833922617236 36.0 36.0 36.0 32.0 36.0 28 34.900110985130866 36.0 36.0 36.0 32.0 36.0 29 34.87526709542564 36.0 36.0 36.0 32.0 36.0 30 34.856852193214806 36.0 36.0 36.0 32.0 36.0 31 34.86482442535831 36.0 36.0 36.0 32.0 36.0 32 34.82202827124478 36.0 36.0 36.0 32.0 36.0 33 34.807912304967005 36.0 36.0 36.0 32.0 36.0 34 34.7898713483375 36.0 36.0 36.0 32.0 36.0 35 34.77042186335166 36.0 36.0 36.0 32.0 36.0 36 34.74021952523294 36.0 36.0 36.0 32.0 36.0 37 34.73750554326383 36.0 36.0 36.0 32.0 36.0 38 34.710274634264444 36.0 36.0 36.0 32.0 36.0 39 34.70957612309522 36.0 36.0 36.0 32.0 36.0 40 34.6941762769882 36.0 36.0 36.0 32.0 36.0 41 34.65944296490904 36.0 36.0 36.0 32.0 36.0 42 34.64413516694513 36.0 36.0 36.0 32.0 36.0 43 34.63165017870284 36.0 36.0 36.0 32.0 36.0 44 34.602302162412236 36.0 36.0 36.0 32.0 36.0 45 34.565910545505105 36.0 36.0 36.0 32.0 36.0 46 34.56830619431267 36.0 36.0 36.0 32.0 36.0 47 34.54078811428352 36.0 36.0 36.0 32.0 36.0 48 34.500058249215556 36.0 36.0 36.0 32.0 36.0 49 34.48167259146685 36.0 36.0 36.0 32.0 36.0 50 33.96381261491036 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 0.0 20 18.0 21 49.0 22 199.0 23 516.0 24 1448.0 25 3292.0 26 6716.0 27 12364.0 28 20291.0 29 31644.0 30 45000.0 31 65004.0 32 95245.0 33 157772.0 34 348701.0 35 1297604.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.661715874899606 18.120665060356504 11.444120784934249 26.773498279809637 2 16.907872089689487 20.576773897843196 35.72726479474766 26.78808921771966 3 18.437915597160686 23.960881250557325 28.76131311203948 28.839890040242512 4 12.693661127784223 15.734613061279282 35.60066351528866 35.97106229564784 5 14.771425763412301 36.24956552797041 33.11920953657116 15.859799172046129 6 34.43067868669493 35.31564080289493 16.506588195135606 13.747092315274525 7 30.260118004028076 30.41559336887741 20.774011307560762 18.550277319533755 8 28.4406708967263 32.13395881325014 19.49138606765059 19.93398422237297 9 27.77907486822014 13.798352242355092 18.56428867640044 39.858284213024334 10 16.34070277798419 26.21564674607417 31.101341649627372 26.342308826314266 11 37.63666392599713 20.937740457795687 22.10382742890839 19.321768187298794 12 24.780127189439394 23.703259798692628 28.236487020972113 23.280125990895865 13 29.524921315617263 19.184942457925132 25.188734649653743 26.101401576803866 14 23.813909337373225 19.558456563583935 24.68812698808408 31.939507110958765 15 25.612060224415288 26.782270185270857 21.928360656130668 25.67730893418318 16 26.25198658590081 25.449202129572146 23.345566467628537 24.953244816898504 17 24.49928446951265 25.439469956109335 24.86397729479137 25.19726827958665 18 25.312328458457284 24.378998640851638 25.880677800337033 24.42799510035405 19 25.952782179095962 24.7002083068655 25.06849676273393 24.278512751304614 20 25.977616001035543 24.03549606518159 24.571436790012775 25.415451143770092 21 27.278371323168088 23.85130389550618 24.010278709312445 24.86004607201329 22 26.251842760677224 24.04757738396301 24.50268833313757 25.197891522222193 23 24.881332205104357 23.7982323880021 25.210068724486007 26.110366682407538 24 25.08949524537782 24.78544872271216 24.76430641484468 25.36074961706534 25 25.23399165334286 24.183108686324378 24.973572115165652 25.609327545167115 26 24.854772480481717 24.915179074388803 25.404136892847813 24.825911552281667 27 25.780575444719577 24.403688637567626 24.52128972872166 25.294446188991138 28 24.811672855146426 24.438158749487624 25.436257859449196 25.313910535916754 29 24.86201168340233 24.641623499123867 25.156757508275945 25.339607309197866 30 24.866470265333568 24.747095329755282 25.463920244119347 24.922514160791806 31 25.388124351288315 24.46251315401524 24.43930935127633 25.710053143420115 32 25.08412577036385 24.45465070845908 24.56611525674001 25.895108264437056 33 24.878263933667807 24.04963887883444 25.10234363201837 25.96975355547938 34 25.349914783555022 24.251521551011212 25.374365071565038 25.02419859386873 35 26.046843875322708 24.115319064273095 25.06940765581665 24.768429404587543 36 24.826678620140804 24.630548956907568 24.876346264019965 25.666426158931664 37 25.888875838081564 24.381012193981874 24.46524583326342 25.26486613467315 38 24.858607819777408 24.18191014279448 25.35461307419224 25.604868963235877 39 25.45735222557548 24.045228238644402 24.591572321315137 25.905847214464984 40 25.637661114214005 24.221414137540062 25.402075397976382 24.73884935026955 41 24.532747804867526 24.57555977975564 25.65281070443197 25.23888171094486 42 25.771850047821886 24.678970115515625 25.06677086005087 24.482408976611623 43 24.924671539145628 23.75263979212461 25.440093198744883 25.882595469984874 44 24.58246339048788 24.29174467187474 25.17363300117697 25.952158936460414 45 24.568656169023402 24.541185551318037 25.426046268574424 25.46411201108413 46 24.50050554711512 24.14894774766655 25.489834164246002 25.86071254097233 47 24.599578592094886 24.00356686554499 25.89673828363772 25.5001162587224 48 25.169605894916497 24.735109894456254 25.039971426722246 25.055312783905 49 24.216236429490884 24.665067010568755 25.401260388376045 25.717436171564316 50 24.03429752165169 25.058524880565137 25.24012819621596 25.667049401567215 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 16.0 1 23.5 2 31.0 3 109.0 4 187.0 5 232.5 6 278.0 7 271.5 8 265.0 9 395.0 10 525.0 11 734.5 12 944.0 13 1722.5 14 2501.0 15 3311.5 16 4122.0 17 5014.0 18 5906.0 19 6389.0 20 6872.0 21 7953.0 22 9034.0 23 9572.5 24 10111.0 25 12425.0 26 14739.0 27 18354.5 28 21970.0 29 25362.5 30 28755.0 31 30322.0 32 31889.0 33 37180.0 34 42471.0 35 48793.0 36 55115.0 37 66267.0 38 77419.0 39 82951.5 40 88484.0 41 97272.5 42 106061.0 43 106809.5 44 107558.0 45 117504.5 46 127451.0 47 135962.5 48 144474.0 49 149199.0 50 153924.0 51 149059.0 52 144194.0 53 141656.5 54 139119.0 55 141583.0 56 144047.0 57 141991.5 58 139936.0 59 128716.5 60 117497.0 61 104188.5 62 90880.0 63 80951.5 64 71023.0 65 61221.0 66 51419.0 67 46996.0 68 42573.0 69 39307.5 70 36042.0 71 28821.0 72 21600.0 73 19424.0 74 17248.0 75 13240.0 76 9232.0 77 8251.0 78 7270.0 79 6257.0 80 5244.0 81 4088.0 82 2932.0 83 2599.0 84 2266.0 85 1782.0 86 1298.0 87 984.5 88 671.0 89 428.5 90 186.0 91 115.5 92 45.0 93 32.0 94 19.0 95 13.5 96 8.0 97 7.5 98 7.0 99 7.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01630019200667349 2 0.004362698448844964 3 5.273591531570835E-4 4 2.3970870598049248E-4 5 0.0 6 6.232426355492805E-4 7 1.91766964784394E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.8765044717659103E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2085865.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.18383063349608 #Duplication Level Percentage of deduplicated Percentage of total 1 80.22278154169945 43.467776080033985 2 12.179822037386055 13.198988288396984 3 3.3348910837203953 5.420915209843864 4 1.3914286268630078 3.0157173222617297 5 0.7020415665047746 1.901965066858449 6 0.4409703715748526 1.4336078356680986 7 0.29504732723065885 1.1190756085272202 8 0.22198878524726218 0.9622562193898552 9 0.16232288794803962 0.7915748281664886 >10 0.8670390457993593 8.578727438663568 >50 0.08236047998174754 3.168147312985435 >100 0.08366144103108458 9.667925369269712 >500 0.012000276572781837 4.3699182873137135 >1k 0.0036445284406226306 2.9034051326208585 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2227 0.10676625764371135 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2213 0.10609507326696599 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 2134 0.10230767571247419 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2118 0.10154060785333661 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.91766964784394E-4 2 0.0 0.0 0.0 0.0 1.91766964784394E-4 3 0.0 0.0 0.0 0.0 1.91766964784394E-4 4 0.0 0.0 0.0 0.0 1.91766964784394E-4 5 0.0 0.0 0.0 0.0 1.91766964784394E-4 6 0.0 0.0 0.0 0.0 2.397087059804925E-4 7 0.0 0.0 0.0 0.0 2.397087059804925E-4 8 0.0 0.0 0.0 0.0 2.397087059804925E-4 9 0.0 0.0 0.0 4.79417411960985E-5 3.355921883726895E-4 10 0.0 0.0 0.0 4.79417411960985E-5 3.355921883726895E-4 11 0.0 0.0 0.0 1.4382522358829551E-4 3.355921883726895E-4 12 0.0 0.0 0.0 1.4382522358829551E-4 6.71184376745379E-4 13 0.0 0.0 0.0 1.91766964784394E-4 6.71184376745379E-4 14 0.0 0.0 0.0 1.91766964784394E-4 6.71184376745379E-4 15 0.0 0.0 0.0 2.397087059804925E-4 8.150096003336745E-4 16 0.0 0.0 0.0 2.397087059804925E-4 9.108930827258715E-4 17 0.0 0.0 0.0 2.397087059804925E-4 9.108930827258715E-4 18 0.0 0.0 0.0 2.397087059804925E-4 0.001054718306314167 19 0.0 0.0 0.0 4.314756707648865E-4 0.0011026600475102656 20 0.0 0.0 0.0 6.232426355492805E-4 0.001246485271098561 21 0.0 0.0 0.0 7.191261179414775E-4 0.0012944270122946596 22 0.0 0.0 0.0 9.5883482392197E-4 0.0012944270122946596 23 0.0 0.0 0.0 0.0011026600475102656 0.0012944270122946596 24 0.0 0.0 0.0 0.001821786165451743 0.0013903104946868564 25 0.0 0.0 0.0 0.0020614948714322355 0.0013903104946868564 26 0.0 0.0 0.0 0.003068271436550304 0.001534135718275152 27 0.0 0.0 0.0 0.004746232378413751 0.0015820774594712506 28 0.0 0.0 0.0 0.012321027487397315 0.0015820774594712506 29 4.79417411960985E-5 0.0 0.0 0.02977182128277717 0.0015820774594712506 30 4.79417411960985E-5 0.0 0.0 0.063762515790811 0.0015820774594712506 31 4.79417411960985E-5 0.0 0.0 0.138216039868352 0.001630019200667349 32 4.79417411960985E-5 0.0 0.0 0.2276273871990757 0.001630019200667349 33 4.79417411960985E-5 0.0 0.0 0.32801739326370594 0.001630019200667349 34 4.79417411960985E-5 0.0 0.0 0.4353589518017705 0.001630019200667349 35 4.79417411960985E-5 0.0 0.0 0.5537750525561338 0.001630019200667349 36 4.79417411960985E-5 0.0 0.0 0.7281871070275401 0.001630019200667349 37 4.79417411960985E-5 0.0 0.0 0.9767170933881147 0.001630019200667349 38 4.79417411960985E-5 0.0 0.0 1.3040633022750754 0.001725902683059546 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGCTA 45 0.0013986598 24.444126 15 GTATCAA 3975 0.0 20.097048 1 TAGTACG 140 4.083631E-9 18.858252 2 TAATACC 185 2.1827873E-11 17.83846 4 TAGGACG 290 0.0 17.448885 4 TTAGGAC 395 0.0 17.266424 3 GTATTAG 615 0.0 17.176271 1 GTCCTAA 370 0.0 16.65402 1 AACGCAG 4890 0.0 16.331467 6 TAATACT 445 0.0 15.820777 4 GTAATAC 155 2.6688758E-7 15.613446 3 GTCCTAT 670 0.0 15.10935 1 GGTATCA 2290 0.0 14.9917345 1 TCAACGC 5430 0.0 14.667178 4 TACGACG 615 0.0 14.666827 5 TCCTACA 635 0.0 14.552037 2 CAACGCA 5500 0.0 14.480158 5 TATCAAC 5620 0.0 14.406542 2 CCTATTC 815 0.0 14.307246 3 ATCAACG 5615 0.0 14.183932 3 >>END_MODULE