##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062441_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1308350 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.313529254404404 32.0 32.0 32.0 32.0 32.0 2 31.556846409599878 32.0 32.0 32.0 32.0 32.0 3 31.60810562922765 32.0 32.0 32.0 32.0 32.0 4 31.67934344785417 32.0 32.0 32.0 32.0 32.0 5 31.66684755608209 32.0 32.0 32.0 32.0 32.0 6 35.285325027706655 36.0 36.0 36.0 36.0 36.0 7 35.30690488019261 36.0 36.0 36.0 36.0 36.0 8 35.25996178392632 36.0 36.0 36.0 36.0 36.0 9 35.357673405434326 36.0 36.0 36.0 36.0 36.0 10 35.28151106355333 36.0 36.0 36.0 36.0 36.0 11 35.3545373944281 36.0 36.0 36.0 36.0 36.0 12 35.309786372148125 36.0 36.0 36.0 36.0 36.0 13 35.316852524171665 36.0 36.0 36.0 36.0 36.0 14 35.2938999503191 36.0 36.0 36.0 36.0 36.0 15 35.26992395001338 36.0 36.0 36.0 36.0 36.0 16 35.299702678946765 36.0 36.0 36.0 36.0 36.0 17 35.311898192379715 36.0 36.0 36.0 36.0 36.0 18 35.311735391905835 36.0 36.0 36.0 36.0 36.0 19 35.253634730767764 36.0 36.0 36.0 36.0 36.0 20 35.22147590476555 36.0 36.0 36.0 36.0 36.0 21 35.188982305957886 36.0 36.0 36.0 36.0 36.0 22 35.1731585584897 36.0 36.0 36.0 36.0 36.0 23 35.1571788894409 36.0 36.0 36.0 36.0 36.0 24 35.15101081514885 36.0 36.0 36.0 36.0 36.0 25 35.111872969771085 36.0 36.0 36.0 36.0 36.0 26 35.08938281041006 36.0 36.0 36.0 36.0 36.0 27 35.02974815607445 36.0 36.0 36.0 36.0 36.0 28 34.97765200443306 36.0 36.0 36.0 36.0 36.0 29 34.938636450491074 36.0 36.0 36.0 36.0 36.0 30 34.888000152864294 36.0 36.0 36.0 36.0 36.0 31 34.87324110520885 36.0 36.0 36.0 36.0 36.0 32 34.8512584553063 36.0 36.0 36.0 36.0 36.0 33 34.864011923414985 36.0 36.0 36.0 36.0 36.0 34 34.815772537929455 36.0 36.0 36.0 36.0 36.0 35 34.80636297626782 36.0 36.0 36.0 36.0 36.0 36 34.73078992624298 36.0 36.0 36.0 36.0 36.0 37 34.63803263652692 36.0 36.0 36.0 32.0 36.0 38 34.59152367485765 36.0 36.0 36.0 32.0 36.0 39 34.37553406962969 36.0 36.0 36.0 32.0 36.0 40 34.44036534566439 36.0 36.0 36.0 32.0 36.0 41 34.41548591737685 36.0 36.0 36.0 32.0 36.0 42 34.383383651163676 36.0 36.0 36.0 32.0 36.0 43 34.37352619711851 36.0 36.0 36.0 32.0 36.0 44 34.28082164558413 36.0 36.0 36.0 32.0 36.0 45 34.22441854243895 36.0 36.0 36.0 32.0 36.0 46 34.10252302518439 36.0 36.0 36.0 32.0 36.0 47 34.09371880612986 36.0 36.0 36.0 32.0 36.0 48 34.05091298200023 36.0 36.0 36.0 32.0 36.0 49 34.00540910306875 36.0 36.0 36.0 32.0 36.0 50 33.585422860855275 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 7.0 21 32.0 22 86.0 23 293.0 24 793.0 25 1883.0 26 4099.0 27 8486.0 28 14484.0 29 22118.0 30 30620.0 31 42631.0 32 61834.0 33 93110.0 34 191834.0 35 836039.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.460413148655086 21.57720565470753 13.108598485340735 25.853782711296645 2 10.30202414419868 21.416625774092605 49.19827624424256 19.08307383746616 3 18.67673945078664 27.459827079116806 30.774169484478087 23.089263985618462 4 10.317852185663709 18.31376151837743 40.583669126774 30.784717169184862 5 9.189360645087325 42.05090381014255 37.1153743264417 11.644361218328429 6 28.774258737960917 39.56997515177595 19.586071848131567 12.069694262131566 7 25.81268453600683 32.72895840482929 23.4905212600002 17.96783579916368 8 21.59307524744908 45.45763748232506 20.226086291894372 12.723200978331487 9 26.666029732105322 15.19287652386594 22.07956586540299 36.061527878625746 10 15.493331295142736 30.102801238200787 36.14690258722818 18.256964879428285 11 31.91294378415562 20.242060610692857 30.887071502273855 16.95792410287767 12 26.736576604119694 23.92693086712271 34.77907287805251 14.557419650705086 13 31.067222073604157 24.314671150685978 26.6398899377078 17.978216838002066 14 17.853785302098064 27.528260786486797 27.709328543585432 26.908625367829707 15 18.684679176061454 42.56949592998816 22.73390147896205 16.011923414988345 16 16.46172660220889 28.40883555623495 37.524668475560816 17.604769365995338 17 16.908013910650823 33.95895593686705 32.452249015936104 16.68078113654603 18 17.478732754996752 26.689417969197844 41.266174953185306 14.565674322620096 19 23.996484121221386 26.184277907287807 28.565215729735925 21.254022241754882 20 23.828562693468875 29.691443421102914 31.76886918637979 14.711124699048419 21 19.445179042305195 27.569610578209197 27.323575495853557 25.661634883632058 22 22.296786028203464 35.2281881759468 27.461994114724654 15.01303168112508 23 16.436274697137616 34.56108839377842 31.843466962204303 17.159169946879658 24 23.332059464210648 28.426873543012192 32.71655138151106 15.524515611266098 25 19.51098712118317 31.699621660870562 32.353192952956014 16.436198264990253 26 14.309015171781251 33.77230863301104 34.336760041273365 17.581916153934348 27 17.020216302977033 33.62930408529828 31.72079336568961 17.62968624603508 28 15.607673787595063 33.60369931593228 29.194252302518443 21.594374593954218 29 19.341002025451907 29.89559368670463 28.47655443879696 22.286849849046508 30 16.527381816792143 29.973783773455114 32.25543623648107 21.24339817327168 31 21.846294951656667 27.57381434631406 30.784728856957237 19.795161845072037 32 17.443879695800053 32.92933847976459 31.291168265372416 18.335613559062942 33 15.485229487522453 33.698093017923334 34.9974395230634 15.81923797149081 34 17.550884702105705 32.53945809607521 34.44880956930485 15.460847632514236 35 16.59769939236443 33.99778346772653 32.70523942370161 16.699277716207437 36 15.339626246799403 31.795544005808846 35.259983949249055 17.604845798142698 37 16.684908472503533 31.62510031719341 28.852371307371882 22.837619902931173 38 18.252837543470786 35.51587877861429 28.52776397752895 17.703519700385982 39 21.552642641495012 28.77471624565292 30.40929414911912 19.263346963732946 40 23.4920319486376 28.572323919440517 32.067030993235754 15.86861313868613 41 22.299461153361104 26.41930676042343 34.06267436083617 17.218557725379295 42 19.06653418427791 33.347345893682885 32.48419765353307 15.101922268506135 43 15.46627431497688 33.93831925707953 33.41330683685558 17.18209959108801 44 15.006764245041465 32.963732946077116 32.47120418848167 19.55829862039974 45 15.917300416555202 33.71276799021668 31.21664692169526 19.153284671532848 46 17.432491305843236 28.16639278480529 32.64187717353919 21.759238735812282 47 22.68345626170367 28.256353422249397 30.870867887033288 18.189322429013643 48 15.706041961248902 31.717965376237245 30.298314671150685 22.277677991363166 49 20.17036725646807 28.418695303244547 31.14824014980701 20.262697290480375 50 15.90224328352505 35.87449841403294 28.419765353307604 19.803492949134405 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 11.0 1 13.5 2 16.0 3 57.5 4 99.0 5 132.0 6 165.0 7 202.0 8 239.0 9 325.0 10 411.0 11 613.5 12 816.0 13 1499.0 14 2182.0 15 3121.0 16 4060.0 17 5105.5 18 6151.0 19 6833.0 20 7515.0 21 8540.0 22 9565.0 23 10695.5 24 11826.0 25 14382.5 26 16939.0 27 25628.5 28 34318.0 29 47143.0 30 59968.0 31 77067.5 32 94167.0 33 121469.0 34 148771.0 35 175012.0 36 201253.0 37 195028.0 38 188803.0 39 163453.0 40 138103.0 41 115912.5 42 93722.0 43 79058.5 44 64395.0 45 59486.5 46 54578.0 47 52283.5 48 49989.0 49 43646.5 50 37304.0 51 30996.5 52 24689.0 53 20490.0 54 16291.0 55 14011.5 56 11732.0 57 10653.0 58 9574.0 59 7828.5 60 6083.0 61 5230.0 62 4377.0 63 3683.0 64 2989.0 65 2681.0 66 2373.0 67 1956.5 68 1540.0 69 1368.0 70 1196.0 71 993.0 72 790.0 73 652.5 74 515.0 75 436.5 76 358.0 77 269.0 78 180.0 79 157.0 80 134.0 81 101.0 82 68.0 83 59.0 84 50.0 85 36.0 86 22.0 87 14.0 88 6.0 89 8.0 90 10.0 91 6.0 92 2.0 93 1.0 94 0.0 95 1.0 96 2.0 97 1.5 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015362861619597202 2 0.003363014483891925 3 4.5859288416708066E-4 4 4.5859288416708066E-4 5 0.0 6 5.350250315282608E-4 7 7.64321473611801E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1308350.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.65746892784653 #Duplication Level Percentage of deduplicated Percentage of total 1 81.66118281801931 45.45054745305105 2 11.343431508133268 12.626933733981652 3 3.0120345921022653 5.029266651585922 4 1.2274224076111109 2.732608980518319 5 0.6565630456703285 1.8271318656784294 6 0.40560494366337196 1.354496672935504 7 0.2954595153148183 1.1511170155149766 8 0.19413056803742657 0.8643852846790612 9 0.14702765896191422 0.736486862418608 >10 0.8856277999887313 9.414735055536164 >50 0.09057820267216388 3.5048685085105924 >100 0.07042206583505907 7.807914172213197 >500 0.006640973046482653 2.6288434747679768 >1k 0.0033204865232413267 3.0710781059989003 >5k 5.534144205402211E-4 1.7995861626095555 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 7371 0.5633813581992586 No Hit GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA 5592 0.42740856804371924 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 5263 0.4022623915618909 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 5144 0.3931669660259105 No Hit CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA 3326 0.25421332212328507 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 2609 0.1994114724653189 No Hit ATTTAGAAATGTCCACTGTAGGACGTGGAATATGGCAAGAAAACTGAAAA 2540 0.1941376542973975 No Hit GTCCTTCAGTGTGCATTTCTCATTTTTCACGTTTTTTAGTGATTTCGTCA 2297 0.1755646424886307 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 2122 0.1621890167004242 No Hit GTCCTACAGTGTGCATTTCTCATTTTTCACGTTTTTCAGTGATTTCGTCA 2068 0.15806168074292046 No Hit TTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCT 1868 0.14277525127068444 No Hit CTGTAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA 1679 0.12832957541942142 No Hit GAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTG 1613 0.12328505369358352 No Hit GGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTT 1590 0.12152711430427637 No Hit CTGTAGGACATGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 1504 0.11495394963121489 No Hit GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG 1453 0.11105591011579469 No Hit GACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACA 1409 0.10769289563190279 No Hit GTCCACTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAA 1392 0.1063935491267627 No Hit ATTCCAGGTCCTTCAGTGTGCATTTCTCATTTTTCACGTTTTTTAGTGAT 1367 0.1044827454427332 No Hit ACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACAC 1348 0.1030305346428708 No Hit TTCCAGGTCCTTCAGTGTGCATTTCTCATTTTTCACGTTTTTTAGTGATT 1313 0.10035540948522949 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 7.643214736118012E-5 0.0 4 0.0 0.0 0.0 7.643214736118012E-5 0.0 5 0.0 0.0 0.0 7.643214736118012E-5 0.0 6 0.0 0.0 0.0 7.643214736118012E-5 0.0 7 0.0 0.0 0.0 7.643214736118012E-5 0.0 8 0.0 0.0 0.0 7.643214736118012E-5 0.0 9 0.0 0.0 0.0 7.643214736118012E-5 0.0 10 0.0 0.0 0.0 1.5286429472236024E-4 0.0 11 0.0 0.0 0.0 2.2929644208354033E-4 0.0 12 0.0 0.0 0.0 2.2929644208354033E-4 0.0 13 0.0 0.0 0.0 2.2929644208354033E-4 0.0 14 0.0 0.0 0.0 2.2929644208354033E-4 0.0 15 0.0 0.0 0.0 3.057285894447205E-4 0.0 16 0.0 0.0 0.0 3.8216073680590057E-4 0.0 17 0.0 0.0 0.0 4.5859288416708066E-4 0.0 18 0.0 0.0 0.0 5.350250315282608E-4 0.0 19 0.0 0.0 0.0 6.11457178889441E-4 0.0 20 0.0 0.0 0.0 8.407536209729812E-4 0.0 21 0.0 0.0 0.0 0.0014522107998624222 0.0 22 0.0 0.0 0.0 0.002675125157641304 0.0 23 0.0 0.0 0.0 0.0038980395154201855 0.0 24 0.0 0.0 0.0 0.006343868230977949 0.0 25 0.0 0.0 0.0 0.007413918294034471 0.0 26 0.0 0.0 0.0 0.009554018420147513 0.0 27 0.0 0.0 0.0 0.012534872167233539 0.0 28 0.0 0.0 0.0 0.01979592616654565 0.0 29 0.0 0.0 0.0 0.031260748270722664 0.0 30 0.0 0.0 0.0 0.051897428058241296 0.0 31 0.0 0.0 0.0 0.11327244238926892 0.0 32 0.0 0.0 0.0 0.19987006534948598 0.0 33 0.0 0.0 0.0 0.285168341804563 0.0 34 0.0 0.0 0.0 0.39026254442618563 0.0 35 0.0 0.0 0.0 0.5111782015515726 0.0 36 0.0 0.0 0.0 0.6693927465892154 0.0 37 0.0 0.0 0.0 0.9476057629839111 0.0 38 0.0 0.0 0.0 1.2573088240914128 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGTAT 40 1.8202303E-5 32.999886 43 TACGACG 30 0.005745282 29.33323 4 CGTTTAC 30 0.005745282 29.33323 24 TAGGACC 2355 0.0 25.970186 4 CAGCGTA 55 1.5937537E-4 23.999918 38 TCGTCTA 65 1.8135883E-5 23.692225 27 TGTAGGA 8245 0.0 22.093313 2 GACGTGT 90 4.082467E-7 21.999924 7 GGACGTA 100 4.6249625E-8 21.999924 6 CGTGTAA 100 4.6249625E-8 21.999924 9 CTGTAGG 8040 0.0 21.975918 1 AGGACCT 5125 0.0 21.592121 5 ACGTGTA 105 7.7476216E-8 20.952309 8 GGACCTG 5080 0.0 20.873943 6 GACGTAA 85 6.114251E-6 20.705809 7 TATCTCG 85 6.114251E-6 20.705809 41 ACTGTTC 1085 0.0 20.681955 8 TCGTATA 75 5.473224E-5 20.533262 44 CAGTCGT 75 5.473224E-5 20.533262 41 CTAGGTC 150 2.1827873E-11 20.533262 4 >>END_MODULE