##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062439_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2067123 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.332406441222897 32.0 32.0 32.0 32.0 32.0 2 31.4340926979188 32.0 32.0 32.0 32.0 32.0 3 31.514458501018083 32.0 32.0 32.0 32.0 32.0 4 31.606694908817715 32.0 32.0 32.0 32.0 32.0 5 31.554024603277114 32.0 32.0 32.0 32.0 32.0 6 35.14773334726574 36.0 36.0 36.0 36.0 36.0 7 35.159953229682024 36.0 36.0 36.0 36.0 36.0 8 35.10697428261405 36.0 36.0 36.0 36.0 36.0 9 35.232063113806 36.0 36.0 36.0 36.0 36.0 10 35.10742418327308 36.0 36.0 36.0 36.0 36.0 11 35.239928151348515 36.0 36.0 36.0 36.0 36.0 12 35.143935314928044 36.0 36.0 36.0 36.0 36.0 13 35.19027314775173 36.0 36.0 36.0 36.0 36.0 14 35.157487967576195 36.0 36.0 36.0 36.0 36.0 15 35.11600374046441 36.0 36.0 36.0 36.0 36.0 16 35.12933192654719 36.0 36.0 36.0 36.0 36.0 17 35.102616535155384 36.0 36.0 36.0 36.0 36.0 18 35.114350234601424 36.0 36.0 36.0 36.0 36.0 19 35.099548502919276 36.0 36.0 36.0 36.0 36.0 20 35.0969274687573 36.0 36.0 36.0 36.0 36.0 21 35.09254698438361 36.0 36.0 36.0 36.0 36.0 22 35.08053657184406 36.0 36.0 36.0 36.0 36.0 23 35.04366068202037 36.0 36.0 36.0 36.0 36.0 24 35.019528591186884 36.0 36.0 36.0 36.0 36.0 25 34.99242086706984 36.0 36.0 36.0 36.0 36.0 26 34.95581927151892 36.0 36.0 36.0 32.0 36.0 27 34.93740333787588 36.0 36.0 36.0 32.0 36.0 28 34.92054367350177 36.0 36.0 36.0 32.0 36.0 29 34.90008093374221 36.0 36.0 36.0 32.0 36.0 30 34.88449115026053 36.0 36.0 36.0 32.0 36.0 31 34.88694044814943 36.0 36.0 36.0 32.0 36.0 32 34.856010987251366 36.0 36.0 36.0 32.0 36.0 33 34.84740433926767 36.0 36.0 36.0 32.0 36.0 34 34.834203866920355 36.0 36.0 36.0 32.0 36.0 35 34.81702588573587 36.0 36.0 36.0 32.0 36.0 36 34.794808049641944 36.0 36.0 36.0 32.0 36.0 37 34.787564165267376 36.0 36.0 36.0 32.0 36.0 38 34.75667340550127 36.0 36.0 36.0 32.0 36.0 39 34.74844119096928 36.0 36.0 36.0 32.0 36.0 40 34.75575522114553 36.0 36.0 36.0 32.0 36.0 41 34.718293009172655 36.0 36.0 36.0 32.0 36.0 42 34.707143213055055 36.0 36.0 36.0 32.0 36.0 43 34.69385517939668 36.0 36.0 36.0 32.0 36.0 44 34.6620234983598 36.0 36.0 36.0 32.0 36.0 45 34.63764710663081 36.0 36.0 36.0 32.0 36.0 46 34.63013086304008 36.0 36.0 36.0 32.0 36.0 47 34.620873068511166 36.0 36.0 36.0 32.0 36.0 48 34.57661445400201 36.0 36.0 36.0 32.0 36.0 49 34.56138507481171 36.0 36.0 36.0 32.0 36.0 50 34.065773541293865 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 8.0 21 39.0 22 153.0 23 436.0 24 1219.0 25 2860.0 26 5948.0 27 11130.0 28 18724.0 29 29098.0 30 42683.0 31 61742.0 32 92496.0 33 154320.0 34 347798.0 35 1298467.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.05794268533836 17.8442433499887 11.374534848783217 26.723279115889724 2 16.69224256791079 20.240584407730825 36.35853027261072 26.708642751747657 3 18.736254964660805 23.6978680379854 28.387216935721852 29.178660061631938 4 12.648654819916203 15.798010856645547 35.65553250148395 35.8978018219543 5 14.765062359617692 36.26494407928314 33.29289065043541 15.67710291066376 6 34.63337703363633 35.197739839679556 16.568349047704285 13.60053407897983 7 30.489525780517173 30.05152571956289 20.67385443439989 18.78509406552005 8 28.230782590102283 32.86388860266177 19.286225347983645 19.619103459252305 9 27.552254994018256 13.896028441461878 18.417675193977328 40.13404137054254 10 16.2153872798087 26.63736023449016 31.235103087721438 25.912149397979707 11 38.03121536551043 20.815016813223018 22.038746605789786 19.115021215476776 12 24.847916645501986 23.515291542883514 28.562838302316795 23.073953509297702 13 29.93077818784852 19.18226443225681 24.98690208565238 25.900055294242286 14 23.54804237580444 19.69360313827479 24.629400379174342 32.128954106746434 15 25.395295780657463 27.395660538826185 21.655895657878123 25.55314802263823 16 26.017561606155027 25.45963641254052 23.6913816933003 24.83142028800415 17 24.425397037331596 25.68376434300233 24.88623076614212 25.004607853523957 18 25.199081041621618 24.681018013925634 25.89226669143539 24.227634253017357 19 25.98524616096865 24.657458699845147 24.832242687058294 24.52505245212791 20 26.082482755017484 24.360621017713992 24.440296973136093 25.11659925413243 21 27.084455061454975 24.006892671602028 24.003070934821004 24.905581332121987 22 26.344924806119423 24.354719095090132 24.467145883433158 24.833210215357287 23 24.77573903439708 24.147813168350407 25.146931266305877 25.929516530946632 24 25.15215591912044 24.82106773520492 24.911773513235545 25.115002832439092 25 25.185535645435706 24.374553425219496 25.043308985483687 25.396601943861107 26 24.764128694809163 25.32181200634892 25.33772784686736 24.576331451974557 27 25.71003273632 24.59432747833583 24.5118940672616 25.183745718082573 28 24.73955347601473 24.72692723171287 25.284852425327376 25.248666866945022 29 24.95603793291449 24.562060409564403 24.94326655936778 25.53863509815333 30 24.490705197513645 24.984338135660046 25.523928668008626 25.001027998817683 31 25.540279896261612 24.572171080288886 24.380697229918102 25.5068517935314 32 25.17653763225507 24.71860648834153 24.38142287614235 25.723433003261054 33 24.755324187288323 24.39564554213755 25.09536200796953 25.753668262604595 34 25.426740450374748 24.57328373783273 25.19148594447452 24.808489867318006 35 25.831022150109114 24.428106116568777 25.08317115140222 24.657700581919894 36 24.547112097344957 25.01413800726904 24.88352168690494 25.55522820848106 37 25.650191111027258 24.714736375145552 24.560850999190663 25.074221514636523 38 24.91574037926142 24.592924562302294 25.03015060061738 25.46118445781891 39 25.670460828891166 24.32167800367951 24.466323484379014 25.541537683050308 40 25.874028782999364 24.42467139110735 25.01873376668926 24.682566059204024 41 24.75382451842488 24.888552834059706 25.493451526590338 24.864171120925075 42 25.912826667789002 25.10266684662693 24.88845608122981 24.096050404354262 43 25.09570064287418 24.123770090120424 25.20720827933316 25.573320987672236 44 24.678212181858555 24.758323525015204 24.852270522847455 25.71119377027879 45 24.79049384095673 24.91225727738504 24.98356411302085 25.31368476863738 46 24.694103538206036 24.38289775973443 25.19441290567896 25.72858579638057 47 25.05494356643854 24.168638410620375 25.451969188063977 25.324448834877106 48 25.454073124821306 24.947959071617895 24.556303616185392 25.0416641873754 49 24.740811262803422 25.00417246578941 24.843707897401366 25.411308374005802 50 24.593685901157166 25.29398390030574 24.724641046480127 25.387689152056968 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 17.0 1 20.0 2 23.0 3 64.5 4 106.0 5 129.0 6 152.0 7 159.0 8 166.0 9 238.0 10 310.0 11 447.5 12 585.0 13 1055.0 14 1525.0 15 2101.5 16 2678.0 17 3157.5 18 3637.0 19 3965.0 20 4293.0 21 5122.0 22 5951.0 23 6794.5 24 7638.0 25 9552.5 26 11467.0 27 14658.5 28 17850.0 29 21456.5 30 25063.0 31 28515.5 32 31968.0 33 38045.0 34 44122.0 35 51768.0 36 59414.0 37 69137.5 38 78861.0 39 84029.0 40 89197.0 41 96211.5 42 103226.0 43 106669.5 44 110113.0 45 120324.0 46 130535.0 47 139202.0 48 147869.0 49 154468.5 50 161068.0 51 156077.0 52 151086.0 53 148409.5 54 145733.0 55 147824.5 56 149916.0 57 146217.0 58 142518.0 59 130713.0 60 118908.0 61 104574.5 62 90241.0 63 78792.0 64 67343.0 65 57628.5 66 47914.0 67 42349.0 68 36784.0 69 33354.0 70 29924.0 71 23186.5 72 16449.0 73 14542.0 74 12635.0 75 9387.0 76 6139.0 77 5542.5 78 4946.0 79 4253.0 80 3560.0 81 2832.5 82 2105.0 83 1786.5 84 1468.0 85 1207.0 86 946.0 87 718.5 88 491.0 89 310.0 90 129.0 91 80.5 92 32.0 93 20.0 94 8.0 95 7.0 96 6.0 97 6.0 98 6.0 99 4.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015577205613792697 2 0.0035314782913256734 3 6.288933943456678E-4 4 9.675282989933352E-5 5 0.0 6 6.288933943456678E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 9.675282989933352E-5 47 9.675282989933352E-5 48 0.0 49 0.0 50 1.4512924484900029E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2067123.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.61052807272924 #Duplication Level Percentage of deduplicated Percentage of total 1 79.64821812509317 45.08927688113449 2 12.950576887972195 14.662779929491768 3 3.449711265066824 5.858699292416273 4 1.3660805267039855 3.0933816002633887 5 0.6743821511476639 1.908856484964618 6 0.41781899862830263 1.4191772490700285 7 0.2559673666039273 1.0143313454983944 8 0.19272404588014228 0.8728168007670201 9 0.13654704486588262 0.695700028496544 >10 0.7540617418792153 7.719614325601919 >50 0.07329034900073253 2.8805889962023135 >100 0.06652811495166044 7.911536098144658 >500 0.010312230882607446 3.813791552350839 >1k 0.0037811513236227262 3.059449415597828 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2186 0.10575084307997153 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2168 0.10488006761087754 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2145 0.1037674100670352 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4512924484900029E-4 2 0.0 0.0 0.0 0.0 1.4512924484900029E-4 3 0.0 0.0 0.0 0.0 1.4512924484900029E-4 4 0.0 0.0 0.0 0.0 1.4512924484900029E-4 5 0.0 0.0 0.0 0.0 1.4512924484900029E-4 6 0.0 0.0 0.0 0.0 1.9350565979866705E-4 7 0.0 0.0 0.0 0.0 2.9025848969800057E-4 8 0.0 0.0 0.0 0.0 2.9025848969800057E-4 9 0.0 0.0 0.0 0.0 2.9025848969800057E-4 10 0.0 0.0 0.0 0.0 2.9025848969800057E-4 11 0.0 0.0 0.0 0.0 2.9025848969800057E-4 12 0.0 0.0 0.0 0.0 3.386349046476673E-4 13 0.0 0.0 0.0 0.0 5.321405644463344E-4 14 0.0 0.0 0.0 0.0 5.321405644463344E-4 15 0.0 0.0 0.0 0.0 5.321405644463344E-4 16 0.0 0.0 0.0 0.0 5.805169793960011E-4 17 0.0 0.0 0.0 0.0 5.805169793960011E-4 18 0.0 0.0 0.0 0.0 6.772698092953346E-4 19 0.0 0.0 0.0 0.0 6.772698092953346E-4 20 0.0 0.0 0.0 0.0 7.256462242450014E-4 21 0.0 0.0 0.0 0.0 7.740226391946682E-4 22 0.0 0.0 0.0 9.675282989933352E-5 7.740226391946682E-4 23 0.0 0.0 0.0 1.9350565979866705E-4 7.740226391946682E-4 24 0.0 0.0 0.0 5.805169793960011E-4 7.740226391946682E-4 25 0.0 0.0 0.0 6.772698092953346E-4 7.740226391946682E-4 26 0.0 0.0 0.0 8.707754690940017E-4 8.223990541443349E-4 27 0.0 0.0 0.0 0.0011610339587920023 9.191518840436685E-4 28 0.0 0.0 0.0 0.0037733603660740074 9.191518840436685E-4 29 0.0 0.0 0.0 0.00880450752083935 9.191518840436685E-4 30 0.0 0.0 0.0 0.019011931075219035 9.675282989933351E-4 31 0.0 0.0 0.0 0.044361172508844415 9.675282989933351E-4 32 0.0 0.0 0.0 0.07425779694773847 9.675282989933351E-4 33 0.0 0.0 0.0 0.10942745061614621 9.675282989933351E-4 34 0.0 0.0 0.0 0.14909611087487296 9.675282989933351E-4 35 0.0 0.0 0.0 0.1932637777239187 9.675282989933351E-4 36 0.0 0.0 0.0 0.2613777699730495 9.675282989933351E-4 37 0.0 0.0 0.0 0.36025916213016834 9.675282989933351E-4 38 0.0 0.0 0.0 0.49721279285267495 0.0010642811288926687 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2900 0.0 21.018658 1 GGTATCA 1685 0.0 18.544352 1 TAGATCG 95 1.5981477E-5 18.526123 5 TAGGACG 805 0.0 17.490501 4 GTCCTAA 620 0.0 17.391123 1 TAATACC 140 8.3815394E-8 17.285534 4 TACCGTC 630 0.0 17.110931 7 ATACCGT 595 0.0 17.008226 6 CGTCGTA 610 0.0 16.950642 10 TGTAGGA 1040 0.0 16.925764 2 GCATACG 190 6.184564E-10 16.210358 37 CCGTCGT 640 0.0 16.156082 9 ACCGTCG 615 0.0 16.097393 8 GTAGGAC 1060 0.0 15.566628 3 ATAACGC 735 0.0 15.565216 3 ACTAGAC 170 4.492904E-8 15.530001 3 CATACCG 85 0.002981106 15.529249 9 AACGCAG 3805 0.0 15.495239 6 GTCGTAG 680 0.0 15.205723 11 TAACGCC 725 0.0 15.172255 4 >>END_MODULE