Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062436_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2118357 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 2988 | 0.14105271207827577 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA | 2659 | 0.1255218077028565 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC | 2625 | 0.12391679022940892 | No Hit |
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT | 2586 | 0.12207574077457198 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 2535 | 0.1196682145644006 | No Hit |
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA | 2414 | 0.11395624061477834 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT | 2224 | 0.10498702532198304 | No Hit |
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA | 2215 | 0.1045621677554822 | No Hit |
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG | 2163 | 0.10210743514903295 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC | 2162 | 0.10206022875275508 | No Hit |
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA | 2151 | 0.1015409583936985 | No Hit |
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC | 2131 | 0.10059683046814111 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATATAC | 545 | 0.0 | 19.783457 | 1 |
GATTTCG | 360 | 0.0 | 19.55546 | 41 |
ATTTCGT | 390 | 0.0 | 19.179394 | 42 |
CTAACCG | 60 | 0.007414102 | 18.333244 | 37 |
GTATTAC | 195 | 1.8189894E-12 | 18.054604 | 1 |
TAGGACG | 615 | 0.0 | 17.886093 | 4 |
ATAACGC | 830 | 0.0 | 17.493893 | 3 |
CGCAATA | 870 | 0.0 | 17.44819 | 36 |
ATACGAA | 855 | 0.0 | 17.239681 | 40 |
ACTGTTC | 680 | 0.0 | 17.146976 | 8 |
TAACGCC | 840 | 0.0 | 17.023727 | 4 |
GTAGGAC | 1025 | 0.0 | 16.956017 | 3 |
AATAACG | 870 | 0.0 | 16.942846 | 2 |
TAGCGGC | 875 | 0.0 | 16.845633 | 30 |
TGTAGGA | 1060 | 0.0 | 16.811636 | 2 |
AATCCCG | 290 | 0.0 | 16.689575 | 19 |
CGGTCCA | 910 | 0.0 | 16.681238 | 10 |
CATCGTT | 875 | 0.0 | 16.594206 | 28 |
GGCGTTA | 705 | 0.0 | 16.538929 | 42 |
ATCGTTT | 865 | 0.0 | 16.531712 | 29 |