##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062431_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1295854 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.299020568675175 32.0 32.0 32.0 32.0 32.0 2 31.430322397430576 32.0 32.0 32.0 32.0 32.0 3 31.509840614760613 32.0 32.0 32.0 32.0 32.0 4 31.607164078669356 32.0 32.0 32.0 32.0 32.0 5 31.555125037234134 32.0 32.0 32.0 32.0 32.0 6 35.13558703372448 36.0 36.0 36.0 36.0 36.0 7 35.14479177438199 36.0 36.0 36.0 36.0 36.0 8 35.09049784929475 36.0 36.0 36.0 36.0 36.0 9 35.21066339263528 36.0 36.0 36.0 36.0 36.0 10 35.088484505198885 36.0 36.0 36.0 36.0 36.0 11 35.20888541456059 36.0 36.0 36.0 36.0 36.0 12 35.12248061895862 36.0 36.0 36.0 36.0 36.0 13 35.17185037820619 36.0 36.0 36.0 36.0 36.0 14 35.13082646656182 36.0 36.0 36.0 36.0 36.0 15 35.091452432141274 36.0 36.0 36.0 36.0 36.0 16 35.10370381231219 36.0 36.0 36.0 36.0 36.0 17 35.07549924605704 36.0 36.0 36.0 36.0 36.0 18 35.09238309253975 36.0 36.0 36.0 36.0 36.0 19 35.06808483054418 36.0 36.0 36.0 36.0 36.0 20 35.05005810839801 36.0 36.0 36.0 36.0 36.0 21 35.05351837475518 36.0 36.0 36.0 36.0 36.0 22 35.03450697377945 36.0 36.0 36.0 36.0 36.0 23 35.00460082694501 36.0 36.0 36.0 36.0 36.0 24 34.97484901848511 36.0 36.0 36.0 36.0 36.0 25 34.9543251014389 36.0 36.0 36.0 32.0 36.0 26 34.91482142278374 36.0 36.0 36.0 32.0 36.0 27 34.891863589571045 36.0 36.0 36.0 32.0 36.0 28 34.88120575311725 36.0 36.0 36.0 32.0 36.0 29 34.851413816679965 36.0 36.0 36.0 32.0 36.0 30 34.83506706774065 36.0 36.0 36.0 32.0 36.0 31 34.84013708334427 36.0 36.0 36.0 32.0 36.0 32 34.80050530383824 36.0 36.0 36.0 32.0 36.0 33 34.77827208929401 36.0 36.0 36.0 32.0 36.0 34 34.76218385713205 36.0 36.0 36.0 32.0 36.0 35 34.735937073157935 36.0 36.0 36.0 32.0 36.0 36 34.7026617196073 36.0 36.0 36.0 32.0 36.0 37 34.69102846462641 36.0 36.0 36.0 32.0 36.0 38 34.66101813938916 36.0 36.0 36.0 32.0 36.0 39 34.651534817965604 36.0 36.0 36.0 32.0 36.0 40 34.64241650679784 36.0 36.0 36.0 32.0 36.0 41 34.60262884553352 36.0 36.0 36.0 32.0 36.0 42 34.582817971777686 36.0 36.0 36.0 32.0 36.0 43 34.567611783426216 36.0 36.0 36.0 32.0 36.0 44 34.51754595810948 36.0 36.0 36.0 32.0 36.0 45 34.4856511613191 36.0 36.0 36.0 32.0 36.0 46 34.47863879727191 36.0 36.0 36.0 32.0 36.0 47 34.447969447175375 36.0 36.0 36.0 32.0 36.0 48 34.398040983011974 36.0 36.0 36.0 32.0 36.0 49 34.38245435056727 36.0 36.0 36.0 32.0 36.0 50 33.872883056270226 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 16.0 21 31.0 22 110.0 23 361.0 24 830.0 25 2126.0 26 4282.0 27 8158.0 28 13327.0 29 20650.0 30 29269.0 31 41368.0 32 60978.0 33 99275.0 34 217736.0 35 797334.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.79504863458115 18.01914511497025 11.553597600647688 26.632208649800916 2 16.952809737945064 20.45335804913887 35.88756572209999 26.706266490816077 3 18.685607086606275 23.895611616441062 28.325975245649005 29.09280605130366 4 12.831259149392949 15.646088940781 35.24942296606631 36.27322894375974 5 14.947903081674324 36.1084659228586 32.74767064808227 16.195960347384812 6 34.3750723465597 35.03124599682369 16.57249395375685 14.021187702859752 7 30.506291603838086 30.22254050224794 20.494438416673482 18.77672947724049 8 28.549821198993097 31.85914462586063 19.449721959418266 20.141312215728004 9 28.092593764420993 13.803869880403195 18.528939216917955 39.57459713825786 10 16.633046624079565 25.989116057827506 30.52658710008998 26.851250218002953 11 37.90149198906667 20.88198207514118 21.872062747809554 19.344463187982598 12 25.19982961043451 23.580511384770197 27.89480913744913 23.324849867346167 13 29.808759320108592 18.94989713347337 25.10660923221289 26.13473431420515 14 24.106342226824935 19.51153447842118 24.44781588049271 31.934307414261177 15 25.834314668164776 26.498124017057478 21.920679335789373 25.746881978988373 16 26.40590683827036 25.199212256936356 23.257481166859847 25.137399737933443 17 24.57946651397457 25.140100659487874 24.827256774297105 25.45317605224045 18 25.532120130817205 23.876378048761666 26.04151393598353 24.5499878844376 19 26.32287279276832 24.316936938883547 25.05814698260761 24.302043285740524 20 26.29856449877841 23.57364332710321 24.64521466152823 25.482577512590154 21 27.564910861871784 23.439137433692377 23.871439220776413 25.124512483659423 22 26.58787178185197 23.874989003390816 24.294480705388107 25.242658509369107 23 24.939460772587037 23.567083946185296 25.166106675597717 26.327348605629957 24 25.2353274365785 24.623144273969135 24.766370285541427 25.375158003910936 25 25.311107578477205 23.872596758585455 25.058532828543957 25.757762834393382 26 24.868156443549967 24.605935545208023 25.532583145940823 24.993324865301183 27 25.896898879040386 24.29008206171374 24.470657959924498 25.342361099321376 28 24.850330361290702 24.119075142724412 25.426398344257915 25.60419615172697 29 24.938226065590722 24.426285677244504 25.15468563588182 25.480802621282955 30 25.026121769890743 24.531621617867444 25.348380295928397 25.093876316313413 31 25.507734667640026 24.24918239246088 24.332293607150188 25.910789332748905 32 25.278156335513106 24.306441929414888 24.41324408459595 26.002157650476054 33 25.044410867273626 23.85669990600793 25.02604460070347 26.07284462601497 34 25.441137659026403 24.209980445327947 25.291660943285276 25.057220952360375 35 26.332441771989746 23.944364102746142 24.943627908699593 24.77956621656452 36 24.87471582446788 24.450285294485337 24.823629822495434 25.85136905855135 37 26.028935358458593 24.34433200036424 24.3512772272185 25.27545541395867 38 25.10290511122395 24.08990518993652 25.115406519561617 25.69178317927791 39 25.590460036392987 24.014433724786898 24.455764306781475 25.93934193203864 40 25.914879299674194 24.203729741159112 25.035382072363088 24.846008886803606 41 24.73666014844265 24.62229541290917 25.402244388642547 25.238800050005633 42 26.05640758912655 24.71713634406345 24.8467805786763 24.379675488133696 43 25.030057398441492 23.69094049175293 25.240806448874643 26.038195660930942 44 24.797546637198327 24.390402005164162 24.895551505030657 25.91649985260685 45 24.929428778241995 24.557318957228205 24.93228403817097 25.580968226358834 46 24.71674962379905 24.146621908399894 25.081915345140253 26.0547131226608 47 25.046533091741956 23.891540083281114 25.420881396949653 25.641045428027276 48 25.632440074267627 24.797392298823787 24.436857855900435 25.133309771008154 49 24.66273206703842 24.607556098140684 24.941775848205122 25.78793598661578 50 24.327759398635493 25.17654394441345 24.74292994652943 25.752766710421632 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 17.0 1 25.5 2 34.0 3 82.5 4 131.0 5 154.0 6 177.0 7 192.0 8 207.0 9 285.5 10 364.0 11 513.5 12 663.0 13 1224.5 14 1786.0 15 2487.5 16 3189.0 17 3832.5 18 4476.0 19 4711.0 20 4946.0 21 5495.0 22 6044.0 23 6189.0 24 6334.0 25 7290.5 26 8247.0 27 10362.0 28 12477.0 29 14253.5 30 16030.0 31 17190.0 32 18350.0 33 21648.5 34 24947.0 35 28930.0 36 32913.0 37 40043.5 38 47174.0 39 50493.0 40 53812.0 41 58904.5 42 63997.0 43 64500.0 44 65003.0 45 72064.5 46 79126.0 47 84159.5 48 89193.0 49 91565.0 50 93937.0 51 90692.5 52 87448.0 53 86270.5 54 85093.0 55 87332.0 56 89571.0 57 88933.0 58 88295.0 59 81232.0 60 74169.0 61 65875.0 62 57581.0 63 51519.0 64 45457.0 65 39388.5 66 33320.0 67 30880.5 68 28441.0 69 26548.5 70 24656.0 71 20093.5 72 15531.0 73 13792.5 74 12054.0 75 9226.5 76 6399.0 77 5637.0 78 4875.0 79 4259.5 80 3644.0 81 2911.0 82 2178.0 83 1920.5 84 1663.0 85 1399.5 86 1136.0 87 827.5 88 519.0 89 346.5 90 174.0 91 113.5 92 53.0 93 33.0 94 13.0 95 9.5 96 6.0 97 3.5 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.013195931023093653 2 0.00439864367436455 3 7.716918726955352E-5 4 2.315075618086605E-4 5 0.0 6 6.173534981564282E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 3.086767490782141E-4 47 1.5433837453910704E-4 48 0.0 49 0.0 50 7.716918726955352E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1295854.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.3384025923579 #Duplication Level Percentage of deduplicated Percentage of total 1 80.05873317623103 41.100874748355096 2 11.862182632289969 12.179710152011566 3 3.207534198623484 4.940090460530656 4 1.355419210761211 2.7834022849390023 5 0.7640156818703833 1.9611672331368286 6 0.4961742942991136 1.528367740602418 7 0.347773678853557 1.2497901595206506 8 0.26555981193135414 1.0906733229826167 9 0.21058935281672952 0.9730188878912426 >10 1.1886719718304963 11.388635755735747 >50 0.12337853973673234 4.422278002660886 >100 0.10801609706415476 11.569634815366086 >500 0.009379543403712467 3.2018689913423173 >1k 0.002571810288114709 1.6104874449249087 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1493 0.1152135965934434 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1431 0.11042910698273109 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1418 0.10942590754822688 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1407 0.10857704648826179 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1358 0.10479575631205368 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1314 0.10140031207219331 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1300 0.10031994345041956 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.716918726955351E-5 2 0.0 0.0 0.0 0.0 7.716918726955351E-5 3 0.0 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 4 0.0 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 5 0.0 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 6 0.0 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 7 0.0 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 8 7.716918726955351E-5 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 9 7.716918726955351E-5 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 10 7.716918726955351E-5 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 11 7.716918726955351E-5 0.0 0.0 7.716918726955351E-5 7.716918726955351E-5 12 7.716918726955351E-5 0.0 0.0 1.5433837453910702E-4 1.5433837453910702E-4 13 7.716918726955351E-5 0.0 0.0 1.5433837453910702E-4 1.5433837453910702E-4 14 7.716918726955351E-5 0.0 0.0 2.3150756180866054E-4 1.5433837453910702E-4 15 7.716918726955351E-5 0.0 0.0 3.0867674907821403E-4 2.3150756180866054E-4 16 7.716918726955351E-5 0.0 0.0 3.8584593634776755E-4 2.3150756180866054E-4 17 7.716918726955351E-5 0.0 0.0 5.401843108868746E-4 3.0867674907821403E-4 18 7.716918726955351E-5 0.0 0.0 5.401843108868746E-4 3.0867674907821403E-4 19 7.716918726955351E-5 0.0 0.0 6.173534981564281E-4 3.8584593634776755E-4 20 7.716918726955351E-5 0.0 0.0 0.0010803686217737492 3.8584593634776755E-4 21 7.716918726955351E-5 0.0 0.0 0.0011575378090433028 3.8584593634776755E-4 22 1.5433837453910702E-4 0.0 0.0 0.0013890453708519633 3.8584593634776755E-4 23 1.5433837453910702E-4 0.0 0.0 0.0021607372435474984 3.8584593634776755E-4 24 1.5433837453910702E-4 0.0 0.0 0.0035497826143994615 3.8584593634776755E-4 25 1.5433837453910702E-4 0.0 0.0 0.00416713611255589 3.8584593634776755E-4 26 1.5433837453910702E-4 0.0 0.0 0.00571051985794696 4.630151236173211E-4 27 1.5433837453910702E-4 0.0 0.0 0.0072539036033380305 4.630151236173211E-4 28 1.5433837453910702E-4 0.0 0.0 0.014121961270328293 4.630151236173211E-4 29 1.5433837453910702E-4 0.0 0.0 0.028475430102465248 4.630151236173211E-4 30 1.5433837453910702E-4 0.0 0.0 0.05424993865049612 4.630151236173211E-4 31 1.5433837453910702E-4 0.0 0.0 0.11938073270599929 4.630151236173211E-4 32 1.5433837453910702E-4 0.0 0.0 0.19485219785562263 4.630151236173211E-4 33 1.5433837453910702E-4 0.0 0.0 0.27078667812886326 4.630151236173211E-4 34 1.5433837453910702E-4 0.0 0.0 0.35629013762352857 6.945226854259816E-4 35 1.5433837453910702E-4 0.0 0.0 0.4464237483543671 6.945226854259816E-4 36 1.5433837453910702E-4 0.0 0.0 0.5846337627541375 6.945226854259816E-4 37 1.5433837453910702E-4 0.0 0.0 0.7813380211042293 6.945226854259816E-4 38 1.5433837453910702E-4 0.0 0.0 1.0191734562689934 6.945226854259816E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCCTAA 290 0.0 22.004978 1 GTTATAT 185 1.8189894E-12 19.031334 1 TATGGCG 430 0.0 18.930132 16 AATCGTA 140 4.081812E-9 18.857042 13 TAGGACG 295 0.0 18.64397 4 GTATCAA 3095 0.0 18.414505 1 TAGGCGT 60 0.0074126096 18.333237 26 CCTAATA 110 2.7968817E-6 17.999907 2 TAAGACT 110 2.7968817E-6 17.999907 4 CGCAATA 470 0.0 17.78714 36 TGTAGGA 400 0.0 17.599909 2 ATACGAA 450 0.0 17.599907 40 GATATAT 215 0.0 17.399286 1 ATATGGC 620 0.0 17.032167 15 TTAACGG 145 1.2495002E-7 16.689568 35 GTGTTAG 120 6.393484E-6 16.503733 1 TAATACC 120 6.407574E-6 16.499912 4 TCCTATA 80 0.0019885246 16.499912 2 TGGCGAG 470 0.0 16.382893 18 CGAGCCG 565 0.0 16.353897 15 >>END_MODULE