##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062430_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1706612 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.297924191321755 32.0 32.0 32.0 32.0 32.0 2 31.468639620487842 32.0 32.0 32.0 32.0 32.0 3 31.539792290221797 32.0 32.0 32.0 32.0 32.0 4 31.627897260771633 32.0 32.0 32.0 32.0 32.0 5 31.578361103754105 32.0 32.0 32.0 32.0 32.0 6 35.17657616376775 36.0 36.0 36.0 36.0 36.0 7 35.187767342547694 36.0 36.0 36.0 36.0 36.0 8 35.135719191005336 36.0 36.0 36.0 36.0 36.0 9 35.25499937888635 36.0 36.0 36.0 36.0 36.0 10 35.13620319088346 36.0 36.0 36.0 36.0 36.0 11 35.25844245792248 36.0 36.0 36.0 36.0 36.0 12 35.17420304087865 36.0 36.0 36.0 36.0 36.0 13 35.21365371859567 36.0 36.0 36.0 36.0 36.0 14 35.181857387619445 36.0 36.0 36.0 36.0 36.0 15 35.138614986886296 36.0 36.0 36.0 36.0 36.0 16 35.15377543343185 36.0 36.0 36.0 36.0 36.0 17 35.12857579813103 36.0 36.0 36.0 36.0 36.0 18 35.137128415832066 36.0 36.0 36.0 36.0 36.0 19 35.122604903750826 36.0 36.0 36.0 36.0 36.0 20 35.1054873632671 36.0 36.0 36.0 36.0 36.0 21 35.09966940347308 36.0 36.0 36.0 36.0 36.0 22 35.085311717015934 36.0 36.0 36.0 36.0 36.0 23 35.0549480491172 36.0 36.0 36.0 36.0 36.0 24 35.0334252894038 36.0 36.0 36.0 36.0 36.0 25 35.00610332049698 36.0 36.0 36.0 36.0 36.0 26 34.96674580982672 36.0 36.0 36.0 36.0 36.0 27 34.9458435778021 36.0 36.0 36.0 32.0 36.0 28 34.934486573398054 36.0 36.0 36.0 32.0 36.0 29 34.90499832416507 36.0 36.0 36.0 32.0 36.0 30 34.88914351944086 36.0 36.0 36.0 32.0 36.0 31 34.889882410295954 36.0 36.0 36.0 32.0 36.0 32 34.843781128926786 36.0 36.0 36.0 32.0 36.0 33 34.832636826648354 36.0 36.0 36.0 32.0 36.0 34 34.81535287458426 36.0 36.0 36.0 32.0 36.0 35 34.787422097114046 36.0 36.0 36.0 32.0 36.0 36 34.75920244320326 36.0 36.0 36.0 32.0 36.0 37 34.73614564997785 36.0 36.0 36.0 32.0 36.0 38 34.70833733736784 36.0 36.0 36.0 32.0 36.0 39 34.69062856700879 36.0 36.0 36.0 32.0 36.0 40 34.67645428486381 36.0 36.0 36.0 32.0 36.0 41 34.64052520432295 36.0 36.0 36.0 32.0 36.0 42 34.61025646133978 36.0 36.0 36.0 32.0 36.0 43 34.60211108324564 36.0 36.0 36.0 32.0 36.0 44 34.56237680269446 36.0 36.0 36.0 32.0 36.0 45 34.51564444642367 36.0 36.0 36.0 32.0 36.0 46 34.51334808380581 36.0 36.0 36.0 32.0 36.0 47 34.480982203336204 36.0 36.0 36.0 32.0 36.0 48 34.431781799260754 36.0 36.0 36.0 32.0 36.0 49 34.419523008158855 36.0 36.0 36.0 32.0 36.0 50 33.92153108029242 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 11.0 21 49.0 22 133.0 23 398.0 24 1063.0 25 2469.0 26 5297.0 27 9831.0 28 16580.0 29 25475.0 30 36945.0 31 52790.0 32 76957.0 33 125848.0 34 280004.0 35 1072761.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.47110615195642 18.429146077319057 11.724852084876558 26.37489568584797 2 16.131423431553227 20.8986578144731 36.92272984304545 26.04718891092822 3 18.426946145678784 24.624576058652153 28.89621728297836 28.0522605126907 4 12.231082537262445 16.102146300475034 36.553789938070246 35.112981224192275 5 14.119972272533108 37.084256459146225 33.60150614287614 15.194265125444522 6 33.60353825077376 36.003037607977475 16.952126032605065 13.441298108643707 7 29.62570805615112 30.944170574513553 21.22179128318203 18.208330086153303 8 27.810422052581373 33.045296763411955 19.93095091327144 19.213330270735234 9 27.68297656409307 14.138245834436885 18.995647516834524 39.18313008463553 10 15.888965974691377 26.82531237328696 31.818187145056992 25.46753450696468 11 37.07374611218015 21.24419610315643 22.674105186181745 19.00795259848167 12 24.61156958933841 24.037273850178014 28.928660996172535 22.422495564311042 13 29.53289910067432 19.64676212284925 25.430209092634996 25.390129683841433 14 23.367115665423658 20.2638326696402 25.33094810068135 31.038103564254794 15 24.98382760697804 27.702723290355397 22.65488582056144 24.65856328210513 16 25.437826524130852 25.782661788385408 24.41451249610339 24.36499919138035 17 23.64427298061891 25.99776633470291 25.760219663286087 24.597741021392093 18 24.56768146479692 24.621765228417473 27.172608653870945 23.637944652914662 19 25.351925335108387 25.16623579349026 25.85813295582124 23.62370591558011 20 25.46630399879996 24.44000159380105 25.680178036952743 24.413516370446242 21 26.557530358394292 24.34308442692305 24.695361335792786 24.404023878889873 22 25.465776638157937 24.995781114863835 25.12375396399416 24.414688282984066 23 23.96115813084638 24.578580251398677 26.02841184756699 25.431849770187952 24 24.49771828628886 25.379406684120347 25.707014834068904 24.415860195521887 25 24.55672408256827 24.782493032979964 25.867684043004502 24.793098841447264 26 23.989987179276838 25.6340046829625 26.267306218402307 24.108701919358356 27 24.951717203441675 25.275223659507844 25.33463962517549 24.43841951187499 28 24.03223462626537 24.940525438705457 26.11571933163484 24.911520603394326 29 24.13899585846109 25.20162755213253 25.952237532608468 24.707139056797914 30 24.125225886141667 25.231276939339466 26.3496916698113 24.29380550470757 31 24.711064963799622 24.996484262386527 25.2642076816523 25.028243092161546 32 24.224486878095313 25.307392658671095 25.3193461665569 25.14877429667669 33 23.893597373040855 24.900387434285005 26.05267043709994 25.153344755574203 34 24.536508591290815 25.115609171856285 26.286759966530177 24.06112227032272 35 25.323330669185495 24.972811629122496 25.902841419139204 23.8010162825528 36 24.126104820545034 25.32538151612669 25.74082451078511 24.807689152543166 37 25.131547182370685 25.2469805673463 25.09920239632676 24.52226985395626 38 24.134249612682908 25.15311037306664 25.825495191642855 24.8871448226076 39 24.747277061218366 24.894703658476562 25.365343733666467 24.992675546638605 40 25.025137523936316 24.975858601720834 26.028529038820775 23.970474835522076 41 24.073310160716087 25.234148125057132 26.30662388404629 24.3859178301805 42 25.17865806639119 25.71990587198496 25.687971255329273 23.413464806294577 43 24.17491497774538 24.66811436928839 26.03743557410823 25.119535078857997 44 23.821173178203363 25.28448176855665 25.82127630650669 25.073068746733295 45 23.92816879290665 25.4846444300169 25.855496152611142 24.731690624465315 46 23.84838949730753 24.93076918569562 26.04420459273062 25.17663672426624 47 24.283434078747835 24.672684828185904 26.37277834680642 24.67110274625984 48 24.561118754585106 25.78758382104427 25.340206209730155 24.311091214640467 49 23.68710638387636 25.494254112827054 25.81072909366628 25.007910409630306 50 23.516944683384388 26.147360970156075 25.435599890308985 24.900094456150548 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 69.0 1 64.5 2 60.0 3 190.5 4 321.0 5 351.5 6 382.0 7 350.0 8 318.0 9 424.5 10 531.0 11 837.0 12 1143.0 13 1900.0 14 2657.0 15 3604.5 16 4552.0 17 5289.0 18 6026.0 19 6603.5 20 7181.0 21 8073.5 22 8966.0 23 9787.0 24 10608.0 25 12277.0 26 13946.0 27 16900.5 28 19855.0 29 23330.5 30 26806.0 31 29782.0 32 32758.0 33 38188.0 34 43618.0 35 49950.5 36 56283.0 37 64788.0 38 73293.0 39 77023.0 40 80753.0 41 86795.5 42 92838.0 43 93849.5 44 94861.0 45 103188.5 46 111516.0 47 117266.0 48 123016.0 49 124842.0 50 126668.0 51 119551.5 52 112435.0 53 110082.0 54 107729.0 55 108932.0 56 110135.0 57 107209.0 58 104283.0 59 95090.0 60 85897.0 61 75814.0 62 65731.0 63 57865.0 64 49999.0 65 43042.0 66 36085.0 67 31905.5 68 27726.0 69 25931.0 70 24136.0 71 19135.0 72 14134.0 73 12614.5 74 11095.0 75 8237.5 76 5380.0 77 4906.5 78 4433.0 79 3840.0 80 3247.0 81 2613.0 82 1979.0 83 1748.0 84 1517.0 85 1247.0 86 977.0 87 718.5 88 460.0 89 296.5 90 133.0 91 87.0 92 41.0 93 28.5 94 16.0 95 10.5 96 5.0 97 8.0 98 11.0 99 7.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01335980293118764 2 0.003925907001708649 3 4.6876501512939085E-4 4 5.8595626891173856E-5 5 5.8595626891173856E-5 6 3.515737613470432E-4 7 1.757868806735216E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.1719125378234771E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1706612.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.855547198976964 #Duplication Level Percentage of deduplicated Percentage of total 1 78.8718897362314 44.05432559834579 2 13.470413256290684 15.047946068529386 3 3.7709660066125132 6.318881093042486 4 1.404331701658128 3.1375886257994074 5 0.6749322088927315 1.8849353924958874 6 0.40540184708593224 1.3586365202676438 7 0.2562333982527205 1.0018439669041364 8 0.16645452999020144 0.7437927085080978 9 0.13482716372406983 0.6777760506384577 >10 0.6749896256590184 7.048679709744536 >50 0.07353252870211394 2.9020455309147373 >100 0.08298625062692994 9.838066483555052 >500 0.009886485078384775 3.6440905074009886 >1k 0.003155261195229183 2.3413917438534573 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1940 0.11367551616887728 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1877 0.10998399167473333 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1781 0.10435881149318064 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1764 0.10336268583603068 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1719125378234771E-4 2 0.0 0.0 0.0 0.0 1.1719125378234771E-4 3 0.0 0.0 0.0 0.0 1.1719125378234771E-4 4 0.0 0.0 0.0 5.8595626891173856E-5 1.1719125378234771E-4 5 5.8595626891173856E-5 0.0 0.0 5.8595626891173856E-5 1.1719125378234771E-4 6 5.8595626891173856E-5 0.0 0.0 1.1719125378234771E-4 1.7578688067352156E-4 7 5.8595626891173856E-5 0.0 0.0 1.1719125378234771E-4 1.7578688067352156E-4 8 5.8595626891173856E-5 0.0 0.0 1.1719125378234771E-4 1.7578688067352156E-4 9 5.8595626891173856E-5 0.0 0.0 1.1719125378234771E-4 1.7578688067352156E-4 10 5.8595626891173856E-5 0.0 0.0 1.7578688067352156E-4 1.7578688067352156E-4 11 5.8595626891173856E-5 0.0 0.0 1.7578688067352156E-4 1.7578688067352156E-4 12 5.8595626891173856E-5 0.0 0.0 1.7578688067352156E-4 5.273606420205647E-4 13 5.8595626891173856E-5 0.0 0.0 1.7578688067352156E-4 5.859562689117386E-4 14 5.8595626891173856E-5 0.0 0.0 1.7578688067352156E-4 6.445518958029125E-4 15 5.8595626891173856E-5 0.0 0.0 3.515737613470431E-4 9.375300302587817E-4 16 5.8595626891173856E-5 0.0 0.0 3.515737613470431E-4 0.0010547212840411294 17 5.8595626891173856E-5 0.0 0.0 3.515737613470431E-4 0.0010547212840411294 18 5.8595626891173856E-5 0.0 0.0 4.6876501512939085E-4 0.0010547212840411294 19 5.8595626891173856E-5 0.0 0.0 4.6876501512939085E-4 0.0010547212840411294 20 5.8595626891173856E-5 0.0 0.0 5.859562689117386E-4 0.0010547212840411294 21 5.8595626891173856E-5 0.0 0.0 9.375300302587817E-4 0.0011133169109323034 22 5.8595626891173856E-5 0.0 0.0 0.0013476994184969987 0.0011133169109323034 23 5.8595626891173856E-5 0.0 0.0 0.002402420702538128 0.0011719125378234772 24 5.8595626891173856E-5 0.0 0.0 0.004570458897511561 0.001289103791605825 25 5.8595626891173856E-5 0.0 0.0 0.005449393300879169 0.001289103791605825 26 5.8595626891173856E-5 0.0 0.0 0.006855688346267342 0.001289103791605825 27 5.8595626891173856E-5 0.0 0.0 0.009492491556370166 0.001289103791605825 28 5.8595626891173856E-5 0.0 0.0 0.01611379739507281 0.001289103791605825 29 5.8595626891173856E-5 0.0 0.0 0.029415004699369276 0.001289103791605825 30 5.8595626891173856E-5 0.0 0.0 0.060529282578582595 0.001289103791605825 31 5.8595626891173856E-5 0.0 0.0 0.12557042842778557 0.0013476994184969987 32 5.8595626891173856E-5 0.0 0.0 0.2017447433863116 0.0013476994184969987 33 5.8595626891173856E-5 0.0 0.0 0.27405174697002016 0.0014062950453881725 34 5.8595626891173856E-5 0.0 0.0 0.3570817502748135 0.0016992731798440418 35 5.8595626891173856E-5 0.0 0.0 0.4541161084065974 0.0016992731798440418 36 5.8595626891173856E-5 0.0 0.0 0.5888860502562973 0.0016992731798440418 37 5.8595626891173856E-5 0.0 0.0 0.7893416898510031 0.0016992731798440418 38 5.8595626891173856E-5 0.0 0.0 1.0414786723637242 0.0016992731798440418 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACCG 55 0.004483786 20.000439 5 TAGGACG 770 0.0 19.71472 4 GTCCTAA 515 0.0 19.653221 1 CTAGCGG 580 0.0 19.344685 29 TAGCGGC 595 0.0 18.857004 30 TGTAGGA 880 0.0 18.750412 2 CGGTCCA 595 0.0 18.487259 10 CGCAATA 550 0.0 18.399864 36 TCTAGCG 640 0.0 17.531122 28 AGGACGT 855 0.0 17.49746 5 GGACGTG 850 0.0 17.082727 6 GTAGGAC 1015 0.0 16.690022 3 GCCGGTC 695 0.0 16.460312 8 CGCCGGT 670 0.0 16.41827 7 TATGGCG 905 0.0 16.04408 16 ATACGAA 645 0.0 16.03089 40 ATTTCGT 440 0.0 15.999882 42 AGCGGCG 730 0.0 15.972485 31 CAATACG 625 0.0 15.839884 38 CCGGTCC 750 0.0 15.839883 9 >>END_MODULE