FastQCFastQC Report
Thu 2 Feb 2017
SRR4062426_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062426_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1292237
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTCG1450.022.758368
TACCGTC1550.022.709427
ATACCGT1600.022.0005996
ACGATTA1001.1236825E-619.79977440
ACGTATG1001.1236825E-619.79977422
TGTAGGA8900.019.5293772
TCTAGCG2950.019.3896128
TATAGGA2050.019.3183482
CGTCGTA1605.2750693E-1119.24977910
GATATAC3100.019.1662641
TAGCGGC3000.019.0664530
GACGTGG4550.018.8569267
TAGGACG6050.018.545964
TAGGACC7750.018.4521164
GTCCTAC7800.018.338091
CGCAATA3000.018.33312436
GTAGGAC9400.018.2558173
CTGTAGG9350.018.122351
CCGTCGT1701.2732926E-1018.117449
TAACGCC2700.017.9264144
Produced by FastQC (version 0.11.5)