##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062420_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 788564 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.046802795968368 32.0 32.0 32.0 32.0 32.0 2 30.98875931439934 32.0 32.0 32.0 32.0 32.0 3 31.244666254102395 32.0 32.0 32.0 32.0 32.0 4 31.442492936527664 32.0 32.0 32.0 32.0 32.0 5 31.287892929426146 32.0 32.0 32.0 32.0 32.0 6 34.87620281930192 36.0 36.0 36.0 32.0 36.0 7 34.88421104691566 36.0 36.0 36.0 32.0 36.0 8 34.80117530092675 36.0 36.0 36.0 32.0 36.0 9 34.98794390816725 36.0 36.0 36.0 36.0 36.0 10 34.79656946043695 36.0 36.0 36.0 32.0 36.0 11 35.01348527196271 36.0 36.0 36.0 36.0 36.0 12 34.87469247898712 36.0 36.0 36.0 32.0 36.0 13 34.944223931095 36.0 36.0 36.0 32.0 36.0 14 34.89245387818871 36.0 36.0 36.0 32.0 36.0 15 34.83138210722275 36.0 36.0 36.0 32.0 36.0 16 34.86905184614058 36.0 36.0 36.0 32.0 36.0 17 34.82489690120269 36.0 36.0 36.0 32.0 36.0 18 34.849613981870846 36.0 36.0 36.0 32.0 36.0 19 34.821432375812236 36.0 36.0 36.0 32.0 36.0 20 34.808922294195526 36.0 36.0 36.0 32.0 36.0 21 34.786437118610536 36.0 36.0 36.0 32.0 36.0 22 34.76840814442455 36.0 36.0 36.0 32.0 36.0 23 34.73674299105716 36.0 36.0 36.0 32.0 36.0 24 34.713876108977836 36.0 36.0 36.0 32.0 36.0 25 34.68164790682811 36.0 36.0 36.0 32.0 36.0 26 34.627483628468966 36.0 36.0 36.0 32.0 36.0 27 34.614480245103756 36.0 36.0 36.0 32.0 36.0 28 34.59262532907919 36.0 36.0 36.0 32.0 36.0 29 34.55812210549809 36.0 36.0 36.0 32.0 36.0 30 34.53991939779143 36.0 36.0 36.0 32.0 36.0 31 34.54534571702487 36.0 36.0 36.0 32.0 36.0 32 34.492616959435125 36.0 36.0 36.0 32.0 36.0 33 34.487335206780934 36.0 36.0 36.0 32.0 36.0 34 34.46052444696943 36.0 36.0 36.0 32.0 36.0 35 34.42936020411786 36.0 36.0 36.0 32.0 36.0 36 34.389699504415624 36.0 36.0 36.0 32.0 36.0 37 34.38832992629641 36.0 36.0 36.0 32.0 36.0 38 34.345238940656685 36.0 36.0 36.0 32.0 36.0 39 34.31826332421972 36.0 36.0 36.0 32.0 36.0 40 34.314141908583196 36.0 36.0 36.0 32.0 36.0 41 34.263160631223336 36.0 36.0 36.0 32.0 36.0 42 34.22709634221192 36.0 36.0 36.0 32.0 36.0 43 34.23159946434278 36.0 36.0 36.0 32.0 36.0 44 34.1726835107867 36.0 36.0 36.0 32.0 36.0 45 34.12061037531513 36.0 36.0 36.0 32.0 36.0 46 34.13447862190006 36.0 36.0 36.0 32.0 36.0 47 34.10622600067972 36.0 36.0 36.0 32.0 36.0 48 34.0508912402798 36.0 36.0 36.0 32.0 36.0 49 34.05312441349085 36.0 36.0 36.0 32.0 36.0 50 33.400303589816424 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 2.0 21 25.0 22 64.0 23 198.0 24 526.0 25 1332.0 26 2732.0 27 5192.0 28 9022.0 29 14727.0 30 22169.0 31 33580.0 32 51724.0 33 87182.0 34 177594.0 35 382493.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.166189366133054 18.504759899652743 11.968490555029918 26.360560179184283 2 16.253034080619674 20.985312133025253 36.76735037575678 25.994303410598295 3 18.959368976361976 24.450136958506647 28.678096784011366 27.912397281120015 4 12.843758639143148 16.068235598469112 36.033818520293906 35.05418724209384 5 14.909506393900813 36.27099385718851 32.87634231336962 15.943157435541059 6 33.84929295439933 35.57420269528243 16.707352488006666 13.869151862311572 7 29.68230860145784 30.486174869763268 20.885939505227224 18.94557702355167 8 27.889845199432383 32.96084142928339 19.7495951496583 19.39971822162592 9 27.686148492703193 14.006979775896438 18.620682658604757 39.686189072795614 10 16.34553441445463 26.366915050649027 30.77543484105285 26.51211569384349 11 37.67290923755079 20.893801898133823 22.415808989504974 19.017479874810412 12 24.87293358560624 23.623573990189765 28.636483532091244 22.867008892112754 13 29.751548384151445 19.22646735077939 25.41873582867085 25.603248436398314 14 23.548247193632985 20.18935685626024 24.48995896338154 31.77243698672524 15 25.310564519810697 27.731040219944102 21.989718019082787 24.968677241162418 16 25.718140823065728 25.59259616213776 24.308997113740926 24.38026590105559 17 23.864771914518034 25.80145682531792 25.45538472463871 24.878386535525333 18 25.048315672538944 24.561100937907387 26.839799940144367 23.55078344940931 19 25.94551615341304 24.828295483942963 24.89258956787274 24.333598794771255 20 25.833794086466032 24.448110743072217 24.93253559634982 24.78555957411193 21 27.097863965385184 24.199684489781426 23.63371901329505 25.06873253153834 22 25.834047712043663 25.068098467594258 24.537513759187586 24.56034006117449 23 24.323453771665964 24.550068225280384 25.2665604820915 25.859917520962156 24 24.754744066429613 25.483790789333522 25.047935234172495 24.71352991006437 25 25.025108932185592 24.834509310594953 25.081667435997584 25.058714321221863 26 23.917145596299093 25.8767836218747 25.99522676662896 24.210844015197246 27 25.275944628463893 24.990742666416423 24.979963579367052 24.75334912575263 28 24.088342861200868 25.22027381417361 25.49609162984869 25.195291694776834 29 24.0964588796851 24.959800345945286 25.38462318847931 25.559117585890302 30 24.122709126970037 25.462232615234782 25.650930044993174 24.764128212802007 31 24.932028345194556 25.073424604724536 24.53383618831192 25.460710861768987 32 24.52394479078426 25.61212533161544 24.56744157734819 25.2964883002521 33 24.193090224762987 24.895759887593144 25.641926336987233 25.26922355065664 34 24.774653674273743 25.28317295742641 25.710912494103205 24.231260874196643 35 25.510548287773727 25.16308124641754 25.27226705758822 24.054103408220513 36 23.986004940626252 25.826185319137064 25.115653263400304 25.072156476836376 37 25.294966546786313 25.532486900238915 24.536499256877057 24.636047296097715 38 24.540176827752724 25.259332153128977 24.944075560132088 25.256415458986208 39 24.994927488447356 24.762733272125026 24.699580503294598 25.54275873613302 40 25.63000593483852 24.96791636442952 25.216596243297946 24.18548145743402 41 24.117129364262127 25.101196605475266 26.205735996063733 24.575938034198874 42 25.756184659710563 25.854591383831877 25.03994602847708 23.34927792798048 43 24.263851760922385 24.6948884301084 25.687325315383408 25.35393449358581 44 23.863250161052243 25.405420485845156 25.234984097676282 25.496345255426316 45 24.03482786432046 25.688847068849196 25.34772066693382 24.92860439989652 46 23.869778153144587 24.87959095163094 25.510993428544616 25.739637466679856 47 24.674091132742554 24.616518126620033 25.904048371470168 24.805342369167246 48 24.863295813656215 25.49989601351317 24.57314815284492 25.063660019985694 49 24.054737472164593 25.29927818160606 25.505222150643448 25.140762195585904 50 23.94085958780771 26.115572103215467 24.635540044942452 25.30802826403437 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 11.0 1 12.5 2 14.0 3 46.0 4 78.0 5 88.0 6 98.0 7 107.5 8 117.0 9 144.0 10 171.0 11 259.0 12 347.0 13 543.0 14 739.0 15 1020.5 16 1302.0 17 1564.0 18 1826.0 19 2136.0 20 2446.0 21 3025.0 22 3604.0 23 4046.5 24 4489.0 25 5182.5 26 5876.0 27 7705.0 28 9534.0 29 11244.5 30 12955.0 31 14355.0 32 15755.0 33 18385.5 34 21016.0 35 24498.0 36 27980.0 37 31595.5 38 35211.0 39 35922.5 40 36634.0 41 38415.0 42 40196.0 43 39878.0 44 39560.0 45 43390.0 46 47220.0 47 50690.5 48 54161.0 49 55196.5 50 56232.0 51 52982.0 52 49732.0 53 48900.5 54 48069.0 55 49805.5 56 51542.0 57 50904.0 58 50266.0 59 45804.5 60 41343.0 61 36723.0 62 32103.0 63 29214.5 64 26326.0 65 22794.5 66 19263.0 67 17596.5 68 15930.0 69 14594.0 70 13258.0 71 10437.0 72 7616.0 73 6694.0 74 5772.0 75 4441.5 76 3111.0 77 2735.5 78 2360.0 79 2034.5 80 1709.0 81 1370.5 82 1032.0 83 896.0 84 760.0 85 597.5 86 435.0 87 330.5 88 226.0 89 156.0 90 86.0 91 56.0 92 26.0 93 19.5 94 13.0 95 9.0 96 5.0 97 4.5 98 4.0 99 4.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.012934904459244905 2 0.0027898813539547836 3 5.072511552645061E-4 4 2.5362557763225306E-4 5 0.0 6 1.2681278881612653E-4 7 0.0 8 1.2681278881612653E-4 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.5362557763225306E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 788564.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.28397551867247 #Duplication Level Percentage of deduplicated Percentage of total 1 80.98225318367922 44.77020902453458 2 11.477067720467142 12.689958617689031 3 3.2710556158250754 5.425108757564687 4 1.3416768063813842 2.9669291087183645 5 0.7087571038514292 1.9591455189003806 6 0.43289127487786744 1.4359170385556963 7 0.2896727940771083 1.1209984559329014 8 0.21258031555318455 0.9401827968635139 9 0.15030363451112225 0.7478444205612339 >10 0.9109483578139933 9.656464094040402 >50 0.10978584495500732 4.279110390320069 >100 0.1058724645291346 11.25974273485222 >500 0.007134883478317426 2.7483890414670435 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 997 0.12643235044967815 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 977 0.12389609467335562 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 971 0.12313521794045887 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 931 0.11806270638781381 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 896 0.11362425877924937 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 825 0.10462055077330439 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 820 0.10398648682922375 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 807 0.1023379205746141 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 797 0.10106979268645283 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 797 0.10106979268645283 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 796 0.10094297989763672 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 1.2681278881612653E-4 9 0.0 0.0 0.0 0.0 1.2681278881612653E-4 10 0.0 0.0 0.0 0.0 1.2681278881612653E-4 11 0.0 0.0 0.0 0.0 1.2681278881612653E-4 12 0.0 0.0 0.0 0.0 1.2681278881612653E-4 13 0.0 0.0 0.0 0.0 1.2681278881612653E-4 14 0.0 0.0 0.0 0.0 1.2681278881612653E-4 15 0.0 0.0 0.0 1.2681278881612653E-4 1.2681278881612653E-4 16 0.0 0.0 0.0 2.5362557763225306E-4 2.5362557763225306E-4 17 0.0 0.0 0.0 3.804383664483796E-4 2.5362557763225306E-4 18 0.0 0.0 0.0 3.804383664483796E-4 2.5362557763225306E-4 19 0.0 0.0 0.0 3.804383664483796E-4 2.5362557763225306E-4 20 0.0 0.0 0.0 3.804383664483796E-4 5.072511552645061E-4 21 0.0 0.0 0.0 5.072511552645061E-4 5.072511552645061E-4 22 0.0 0.0 0.0 0.0010145023105290123 5.072511552645061E-4 23 0.0 0.0 0.0 0.001902191832241898 5.072511552645061E-4 24 0.0 0.0 0.0 0.004058009242116049 5.072511552645061E-4 25 0.0 0.0 0.0 0.004438447608564429 5.072511552645061E-4 26 0.0 0.0 0.0 0.006340639440806327 5.072511552645061E-4 27 0.0 0.0 0.0 0.007735580117783718 5.072511552645061E-4 28 0.0 0.0 0.0 0.013315342825693285 5.072511552645061E-4 29 0.0 0.0 0.0 0.023967617086247915 5.072511552645061E-4 30 0.0 0.0 0.0 0.04438447608564428 5.072511552645061E-4 31 0.0 0.0 0.0 0.09282696141340462 5.072511552645061E-4 32 0.0 0.0 0.0 0.15039996753592608 6.340639440806326E-4 33 0.0 0.0 0.0 0.2098751654906894 6.340639440806326E-4 34 0.0 0.0 0.0 0.28050988886127187 6.340639440806326E-4 35 0.0 0.0 0.0 0.3619236992812251 6.340639440806326E-4 36 0.0 0.0 0.0 0.47427983017231323 6.340639440806326E-4 37 0.0 0.0 0.0 0.634444382447081 6.340639440806326E-4 38 0.0 0.0 0.0 0.8472362420805414 6.340639440806326E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATATAC 365 0.0 22.305485 1 GTATAAT 80 3.607127E-6 22.004059 1 TTAGCCG 110 1.2643068E-7 19.999886 32 TCCTACA 485 0.0 19.959913 2 GCGAGGA 370 0.0 19.621508 20 ATACACT 395 0.0 19.493559 4 GTCCTAC 535 0.0 19.33067 1 ACGTGAT 105 1.7911752E-6 18.857035 37 GGCGTTA 315 0.0 18.857033 42 ATGCGGC 315 0.0 18.857033 35 ACTGTTC 425 0.0 18.635187 8 CGCAATA 260 0.0 18.615276 36 TTAGGAC 395 0.0 18.37964 3 TAGGACG 505 0.0 18.296925 4 GGACGTG 520 0.0 17.769127 6 CGGCGTT 335 0.0 17.731241 41 GTGTTAC 75 0.0012887357 17.603247 1 GTCCTAA 350 0.0 17.603247 1 AGGACGT 525 0.0 17.599897 5 CGACCAT 405 0.0 17.382616 10 >>END_MODULE