FastQCFastQC Report
Thu 2 Feb 2017
SRR4062411_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062411_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1872168
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGAAC904.084468E-721.99989512
TAGGACG13400.019.7013974
TGTAGGA15950.019.1733462
GTAGGAC16950.018.6901743
AGGACGT14250.018.6806135
GTCCTAC13950.018.4544811
CTGTAGG16500.018.2695051
GGACGTG14250.018.063076
ACGCGAA1102.7982187E-617.99991211
AACCGGT2100.017.8094377
GTCCTAA8050.017.7667351
CGTCTTA2850.017.754315
GTAAGAC1509.606083E-917.5999153
TAGGACA5650.017.522044
CGTGGAA8650.017.2947149
ATACGAA5600.017.28563140
ACGTGGA8800.016.9999168
GTATACC1307.322451E-716.9229953
GACGTGG9050.016.7734017
TTAGGAC8400.016.7618243
Produced by FastQC (version 0.11.5)