##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062409_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 912888 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.121137532753195 32.0 32.0 32.0 32.0 32.0 2 31.368317909754538 32.0 32.0 32.0 32.0 32.0 3 31.472903576342333 32.0 32.0 32.0 32.0 32.0 4 31.59157311740323 32.0 32.0 32.0 32.0 32.0 5 31.509675885760355 32.0 32.0 32.0 32.0 32.0 6 35.105643846780765 36.0 36.0 36.0 36.0 36.0 7 35.12541735678418 36.0 36.0 36.0 36.0 36.0 8 35.05907953659156 36.0 36.0 36.0 36.0 36.0 9 35.17634693412555 36.0 36.0 36.0 36.0 36.0 10 35.06878171254305 36.0 36.0 36.0 36.0 36.0 11 35.18739648237243 36.0 36.0 36.0 36.0 36.0 12 35.08917632831191 36.0 36.0 36.0 36.0 36.0 13 35.118803182865804 36.0 36.0 36.0 36.0 36.0 14 35.081577367650794 36.0 36.0 36.0 36.0 36.0 15 35.05533208893095 36.0 36.0 36.0 36.0 36.0 16 35.04186712937403 36.0 36.0 36.0 36.0 36.0 17 35.01990386553444 36.0 36.0 36.0 36.0 36.0 18 35.02588597944107 36.0 36.0 36.0 36.0 36.0 19 34.998472978065216 36.0 36.0 36.0 36.0 36.0 20 34.96892608950934 36.0 36.0 36.0 36.0 36.0 21 34.91959254585448 36.0 36.0 36.0 32.0 36.0 22 34.89532012689399 36.0 36.0 36.0 32.0 36.0 23 34.82794055787785 36.0 36.0 36.0 32.0 36.0 24 34.792593395903985 36.0 36.0 36.0 32.0 36.0 25 34.765866130346765 36.0 36.0 36.0 32.0 36.0 26 34.69541170439309 36.0 36.0 36.0 32.0 36.0 27 34.660419459999474 36.0 36.0 36.0 32.0 36.0 28 34.609212740226624 36.0 36.0 36.0 32.0 36.0 29 34.563345120102355 36.0 36.0 36.0 32.0 36.0 30 34.542303108376935 36.0 36.0 36.0 32.0 36.0 31 34.51897604087248 36.0 36.0 36.0 32.0 36.0 32 34.46668046901701 36.0 36.0 36.0 32.0 36.0 33 34.39988037963036 36.0 36.0 36.0 32.0 36.0 34 34.37554223519205 36.0 36.0 36.0 32.0 36.0 35 34.26662964131416 36.0 36.0 36.0 32.0 36.0 36 34.239812550937245 36.0 36.0 36.0 32.0 36.0 37 34.1549116649578 36.0 36.0 36.0 32.0 36.0 38 34.06388954614367 36.0 36.0 36.0 32.0 36.0 39 33.9099845764212 36.0 36.0 36.0 32.0 36.0 40 33.78869039794586 36.0 36.0 36.0 32.0 36.0 41 33.798104477219546 36.0 36.0 36.0 32.0 36.0 42 33.59210658919824 36.0 36.0 36.0 27.0 36.0 43 33.649071956253124 36.0 36.0 36.0 27.0 36.0 44 33.62234249984664 36.0 36.0 36.0 27.0 36.0 45 33.39758765587892 36.0 36.0 36.0 21.0 36.0 46 33.53472605620843 36.0 36.0 36.0 21.0 36.0 47 33.39260456923522 36.0 36.0 36.0 21.0 36.0 48 33.40999772151677 36.0 36.0 36.0 21.0 36.0 49 33.46632116973824 36.0 36.0 36.0 21.0 36.0 50 32.82325433130899 36.0 36.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 12.0 21 22.0 22 111.0 23 311.0 24 927.0 25 2326.0 26 4973.0 27 9426.0 28 15938.0 29 22458.0 30 30381.0 31 41426.0 32 59120.0 33 79071.0 34 157880.0 35 488502.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.16639368060083 17.462379963735764 11.973880985379267 25.397345370284143 2 15.067180079860218 21.011015013501744 36.00556501925299 27.916239887385043 3 19.624792278511656 24.8267846521069 28.09982900290399 27.44859406647745 4 12.413269564874476 15.870875443374091 35.034823625293846 36.68103136645758 5 13.781427732646284 37.099293670198314 33.48307788030952 15.636200716845877 6 34.6471563168555 34.128579456513044 16.891430774809038 14.332833451822413 7 29.34883578270281 30.925370910779854 20.802223273829867 18.92357003268747 8 29.358365976987322 31.932175688583925 20.137410065637845 18.572048268790915 9 27.54620501091043 14.539461576885666 18.058951371909806 39.8553820402941 10 16.357756920892815 27.086345751066943 31.432990684508944 25.1229066435313 11 37.74186975839314 21.260768024116867 20.314868855763248 20.68249336172674 12 23.30581626661759 24.565883218971003 28.87878907379657 23.24951144061484 13 31.034694288894148 19.179351683886743 24.948405499907985 24.837548527311128 14 24.49763826449685 19.374446810561647 24.299475948856813 31.828438976084687 15 26.52099709931558 25.559323816284145 24.46291330371305 23.456765780687224 16 26.684105826782694 25.26498321809466 24.63248503649955 23.418425918623097 17 23.92166399383057 25.48768304545574 26.635468973192765 23.955183987520922 18 26.100682668629666 23.009394361630342 28.26250317673143 22.627419793008563 19 24.92003400198053 27.577643697803015 24.781791413623576 22.72053088659288 20 24.16320512483459 23.193644784464247 28.620049776095208 24.023100314605955 21 26.147238215421826 25.021141695366794 23.468705909158626 25.362914180052755 22 23.84651786418487 25.527337417076357 25.12630245988555 25.49984225885322 23 22.89656562469876 24.754624882789564 25.437950767235414 26.910858725276267 24 23.086840882999887 27.427680065900745 24.83831532455241 24.647163726546957 25 25.367624505963494 24.308677515752205 24.233969555958673 26.08972842232563 26 23.17305080141266 24.830537809676542 25.874148855062177 26.122262533848623 27 26.365008631946086 25.316796803112755 25.247346881545162 23.070847683395993 28 24.233750471032593 23.61932679583914 26.07307796794349 26.073844765184777 29 23.270434051055553 25.721556204046937 27.048553601318016 23.959456143579498 30 25.2059398305159 24.845654669576113 27.01492406516462 22.933481434743364 31 23.46969179132599 25.1291505639246 25.492283828903435 25.908873815845972 32 23.71671004548203 25.413303713051327 25.680477780406797 25.189508461059845 33 23.1726126315605 24.675425682011376 25.87009578392968 26.281865902498446 34 23.05879801246155 26.090057049714748 27.118441692737772 23.732703245085926 35 25.767783123449973 24.890128909570507 26.02498882666877 23.317099140310752 36 23.884200471470763 26.256232966146996 25.5098106229899 24.349755939392345 37 25.651449027701094 25.510796505157256 25.811271481277004 23.02648298586464 38 24.25971203477316 25.338595753257792 24.789021216184242 25.612670995784807 39 24.28041556028779 25.133970432298376 25.962111452883597 24.623502554530237 40 25.25786295799704 25.596568253717873 24.696567377378166 24.449001410906924 41 22.836317270026555 25.71673633567316 26.472798415577813 24.97414797872247 42 26.640179299103504 25.867795392205835 25.204625320959416 22.287399987731245 43 25.079418285704268 23.643973850023222 24.766236383871846 26.510371480400664 44 24.137791273409224 24.746080570672415 27.105406139635967 24.01072201628239 45 25.009639736747552 25.108885208262134 25.602045376869892 24.279429678120426 46 23.729797586993335 24.820733366488255 27.178530506547364 24.270938539971038 47 25.019717643347267 24.111610624742575 27.104201172542524 23.764470559367634 48 24.204940803252974 28.298323562145626 23.94543470831033 23.551300926291066 49 22.97357397621614 25.33728124370131 27.738890203398448 23.950254576684106 50 22.795677016238574 27.99554819430204 23.71550507838859 25.4932697110708 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 20.0 1 21.5 2 23.0 3 98.0 4 173.0 5 187.0 6 201.0 7 212.0 8 223.0 9 287.5 10 352.0 11 518.5 12 685.0 13 1216.0 14 1747.0 15 2492.0 16 3237.0 17 3983.5 18 4730.0 19 5106.5 20 5483.0 21 5986.5 22 6490.0 23 6782.0 24 7074.0 25 6587.0 26 6100.0 27 7081.0 28 8062.0 29 9071.5 30 10081.0 31 10815.0 32 11549.0 33 13544.5 34 15540.0 35 17699.5 36 19859.0 37 24110.5 38 28362.0 39 30630.5 40 32899.0 41 37970.0 42 43041.0 43 47655.5 44 52270.0 45 63528.5 46 74787.0 47 84750.0 48 94713.0 49 90885.5 50 87058.0 51 77792.5 52 68527.0 53 62895.5 54 57264.0 55 57793.0 56 58322.0 57 55756.0 58 53190.0 59 49349.5 60 45509.0 61 39725.5 62 33942.0 63 29121.0 64 24300.0 65 20904.0 66 17508.0 67 14881.5 68 12255.0 69 11512.0 70 10769.0 71 8198.0 72 5627.0 73 5081.0 74 4535.0 75 3190.0 76 1845.0 77 1713.5 78 1582.0 79 1373.0 80 1164.0 81 953.5 82 743.0 83 606.0 84 469.0 85 405.5 86 342.0 87 250.0 88 158.0 89 103.0 90 48.0 91 33.0 92 18.0 93 14.0 94 10.0 95 6.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015664572214773333 2 0.004710325910736037 3 7.667972412826108E-4 4 2.1908492608074595E-4 5 0.0 6 5.477123152018649E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 2.1908492608074595E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 912888.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.50738528424526 #Duplication Level Percentage of deduplicated Percentage of total 1 78.5741948976505 37.328545504020596 2 12.580575511801179 11.953404958733591 3 3.7510154685829735 5.346028112194053 4 1.531002320491278 2.9093566844261076 5 0.8224735468912959 1.9536783839132277 6 0.47561365978197234 1.3557096829027262 7 0.3433684882801689 1.1418777347036386 8 0.24286118114604133 0.9230159762633493 9 0.18264065165392845 0.7809101826019924 >10 1.179550333786115 11.141395147462225 >50 0.16020471457987745 5.3841568935970585 >100 0.14376630021787257 13.326892690069492 >500 0.009260309190432421 3.0414773248052365 >1k 0.0030096004868905364 2.131145806131159 >5k 4.63015459521621E-4 1.2824049181756365 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 6148 0.673467062772213 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 5512 0.6037980562785359 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 2717 0.2976268720806933 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 2493 0.2730893603596498 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 1486 0.16278010007799423 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 1469 0.1609178782063079 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 1452 0.15905565633462154 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1373 0.15040180175443207 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 1352 0.14810141003058425 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 1343 0.14711552786322088 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1230 0.13473722953965875 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 1221 0.13375134737229538 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1156 0.12663108727467115 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 1068 0.11699135052711833 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1017 0.1114046849120593 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 969 0.10614664668612141 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 940 0.10296991525795059 No Hit ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC 937 0.10264128786882946 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 926 0.10143632077538538 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0954246304037297E-4 2 0.0 0.0 0.0 0.0 1.0954246304037297E-4 3 0.0 0.0 0.0 0.0 1.0954246304037297E-4 4 0.0 0.0 0.0 0.0 1.0954246304037297E-4 5 0.0 0.0 0.0 0.0 1.0954246304037297E-4 6 0.0 0.0 0.0 0.0 1.0954246304037297E-4 7 0.0 0.0 0.0 0.0 1.0954246304037297E-4 8 0.0 0.0 0.0 0.0 1.0954246304037297E-4 9 0.0 0.0 0.0 1.0954246304037297E-4 1.0954246304037297E-4 10 0.0 0.0 0.0 2.1908492608074595E-4 1.0954246304037297E-4 11 0.0 0.0 0.0 2.1908492608074595E-4 1.0954246304037297E-4 12 0.0 0.0 0.0 2.1908492608074595E-4 3.286273891211189E-4 13 0.0 0.0 0.0 2.1908492608074595E-4 3.286273891211189E-4 14 0.0 0.0 0.0 2.1908492608074595E-4 3.286273891211189E-4 15 0.0 0.0 0.0 3.286273891211189E-4 4.381698521614919E-4 16 0.0 0.0 0.0 4.381698521614919E-4 4.381698521614919E-4 17 0.0 0.0 0.0 4.381698521614919E-4 4.381698521614919E-4 18 0.0 0.0 0.0 6.572547782422378E-4 4.381698521614919E-4 19 0.0 0.0 0.0 0.0010954246304037297 4.381698521614919E-4 20 0.0 0.0 0.0 0.0018622218716863406 4.381698521614919E-4 21 0.0 0.0 0.0 0.0026290191129689513 4.381698521614919E-4 22 0.0 0.0 0.0 0.003724443743372681 4.381698521614919E-4 23 0.0 0.0 0.0 0.00624392039330126 4.381698521614919E-4 24 0.0 0.0 0.0 0.009420651821472075 4.381698521614919E-4 25 0.0 0.0 0.0 0.012378298323562145 4.381698521614919E-4 26 0.0 0.0 0.0 0.016759996845177063 5.477123152018648E-4 27 0.0 0.0 0.0 0.022675289849357204 7.667972412826108E-4 28 0.0 0.0 0.0 0.035929927877242335 7.667972412826108E-4 29 0.0 0.0 0.0 0.05652391092883245 7.667972412826108E-4 30 0.0 0.0 0.0 0.09267292373215553 8.763397043229838E-4 31 0.0 0.0 0.0 0.15368807564564327 8.763397043229838E-4 32 0.0 0.0 0.0 0.23201093671950995 8.763397043229838E-4 33 0.0 0.0 0.0 0.30058451858278346 8.763397043229838E-4 34 0.0 0.0 0.0 0.38569901236515325 8.763397043229838E-4 35 0.0 0.0 0.0 0.4810009552102777 8.763397043229838E-4 36 0.0 0.0 0.0 0.620886680512834 8.763397043229838E-4 37 0.0 0.0 0.0 0.8177344865963843 8.763397043229838E-4 38 0.0 0.0 0.0 1.0468973192768445 8.763397043229838E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGCTA 25 0.002352593 35.19969 8 CGCGTTA 45 4.068708E-5 29.333076 12 TCGTATA 105 3.6379788E-12 27.237858 44 CGGTGAT 95 9.622454E-10 25.473463 43 CCGTTTA 70 1.131848E-6 25.14264 27 TTCGCGT 55 1.5932953E-4 23.999792 10 CTCGTAT 70 3.2144566E-5 21.99981 43 TACACGA 60 2.8722006E-4 21.99981 5 CGCACGA 100 4.6213245E-8 21.999807 42 CTCTTCG 245 0.0 21.55083 38 CCGCACG 105 7.741619E-8 20.952198 41 TGGTATA 355 0.0 20.450525 44 TTGTCGG 140 1.8553692E-10 20.428394 22 ACTATAC 55 0.0044830106 19.999826 3 AGGTATA 165 3.6379788E-12 19.999825 7 ACGACGG 225 0.0 19.555386 6 CGAAATT 150 4.656613E-10 19.066502 13 GTCCTAC 255 0.0 18.985426 1 ACCGCTA 70 8.121716E-4 18.85698 18 CTAAGAC 105 1.7918574E-6 18.856977 3 >>END_MODULE