##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062404_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1658232 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.240671389769346 32.0 32.0 32.0 32.0 32.0 2 31.302290632432616 32.0 32.0 32.0 32.0 32.0 3 31.428685491535564 32.0 32.0 32.0 32.0 32.0 4 31.557549848272135 32.0 32.0 32.0 32.0 32.0 5 31.459515918158615 32.0 32.0 32.0 32.0 32.0 6 35.05523654108713 36.0 36.0 36.0 36.0 36.0 7 35.0735168540952 36.0 36.0 36.0 36.0 36.0 8 35.00731260764477 36.0 36.0 36.0 36.0 36.0 9 35.153597928396024 36.0 36.0 36.0 36.0 36.0 10 35.002479749516354 36.0 36.0 36.0 36.0 36.0 11 35.171056884681995 36.0 36.0 36.0 36.0 36.0 12 35.0658201023741 36.0 36.0 36.0 36.0 36.0 13 35.11816923084345 36.0 36.0 36.0 36.0 36.0 14 35.07286254275638 36.0 36.0 36.0 36.0 36.0 15 35.02223030311802 36.0 36.0 36.0 36.0 36.0 16 35.036778327761134 36.0 36.0 36.0 36.0 36.0 17 35.0084988107816 36.0 36.0 36.0 36.0 36.0 18 35.027599274407926 36.0 36.0 36.0 36.0 36.0 19 35.0067529754582 36.0 36.0 36.0 36.0 36.0 20 34.994806516820326 36.0 36.0 36.0 36.0 36.0 21 34.9941618543123 36.0 36.0 36.0 36.0 36.0 22 34.967638424538904 36.0 36.0 36.0 32.0 36.0 23 34.938773344140024 36.0 36.0 36.0 32.0 36.0 24 34.9062290439456 36.0 36.0 36.0 32.0 36.0 25 34.881461701378335 36.0 36.0 36.0 32.0 36.0 26 34.83476377249987 36.0 36.0 36.0 32.0 36.0 27 34.81666919948475 36.0 36.0 36.0 32.0 36.0 28 34.79543634425099 36.0 36.0 36.0 32.0 36.0 29 34.777777174725856 36.0 36.0 36.0 32.0 36.0 30 34.761701016504325 36.0 36.0 36.0 32.0 36.0 31 34.765205954293485 36.0 36.0 36.0 32.0 36.0 32 34.725868877213806 36.0 36.0 36.0 32.0 36.0 33 34.70426212978642 36.0 36.0 36.0 32.0 36.0 34 34.6904992787499 36.0 36.0 36.0 32.0 36.0 35 34.66824002913947 36.0 36.0 36.0 32.0 36.0 36 34.63783656327944 36.0 36.0 36.0 32.0 36.0 37 34.63203761596689 36.0 36.0 36.0 32.0 36.0 38 34.59784577791286 36.0 36.0 36.0 32.0 36.0 39 34.58129079646274 36.0 36.0 36.0 32.0 36.0 40 34.58229306876239 36.0 36.0 36.0 32.0 36.0 41 34.54427607234693 36.0 36.0 36.0 32.0 36.0 42 34.51340584429682 36.0 36.0 36.0 32.0 36.0 43 34.50975798320138 36.0 36.0 36.0 32.0 36.0 44 34.47470559005013 36.0 36.0 36.0 32.0 36.0 45 34.428142141750975 36.0 36.0 36.0 32.0 36.0 46 34.44504025974653 36.0 36.0 36.0 32.0 36.0 47 34.41422310026582 36.0 36.0 36.0 32.0 36.0 48 34.383587459414606 36.0 36.0 36.0 32.0 36.0 49 34.37388556004226 36.0 36.0 36.0 32.0 36.0 50 33.8020771520511 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 1.0 20 12.0 21 35.0 22 113.0 23 370.0 24 1019.0 25 2322.0 26 5194.0 27 9515.0 28 16298.0 29 25771.0 30 38170.0 31 56626.0 32 85962.0 33 145603.0 34 320757.0 35 950461.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.35226158991324 18.26973821105358 11.652488065548262 26.72551213348492 2 16.491805750297768 20.61477226468859 36.304913534458066 26.58850845055558 3 18.32252757623984 24.186764007933803 28.83505877684579 28.655649638980567 4 12.381108026158042 15.886717628697621 36.22716538377111 35.50500896137322 5 14.635708393035474 36.46648961062143 33.287561692211945 15.610240304131148 6 34.11676234137387 35.83794218268592 16.60397907880906 13.441316397131144 7 30.19900737533394 30.51983138647835 20.810804291322675 18.47035694686503 8 28.269385707186935 32.425619575547934 19.571989926620642 19.733004790644493 9 27.71433671524853 13.902216336435433 18.57550692544831 39.807940022867726 10 15.940290622783785 26.307959320529335 31.385716835762427 26.366033220924457 11 37.798691618543124 20.843464605676406 22.284517486093623 19.073326289686847 12 24.7040221151202 23.639514856787226 28.528818645400644 23.12764438269193 13 29.369231808335627 19.277579976746317 25.393913517529516 25.959274697388544 14 23.57643562541309 19.81134123572576 24.75932197665948 31.85290116220167 15 25.572597802961226 27.003459105842847 22.02653187250035 25.397411218695577 16 26.191992435316653 25.626872476227692 23.387620067638302 24.793515020817352 17 24.2175401270751 25.655758663443955 25.058254815972674 25.068446393508264 18 25.24707037374746 24.516231745618224 26.10243922442698 24.134258656207333 19 25.815507118424925 25.0524052122984 25.000663357117702 24.131424312158973 20 25.867248973605623 24.246788145446477 24.661687869972358 25.224275010975543 21 27.105555796776326 24.023538322743743 23.91872789814694 24.95217798233299 22 25.951917463901314 24.485476097433896 24.475766961438445 25.08683947722635 23 24.59034682722321 24.024081069476406 25.10064936631304 26.284922736987344 24 24.78296161212665 25.25171387357137 24.718495361324592 25.24682915297739 25 25.07188378948181 24.406174769272333 24.967555806425157 25.554385634820704 26 24.60922235248144 25.233501705430843 25.430639379773158 24.72663656231456 27 25.651718215545234 24.790620371576473 24.460570052923835 25.09709135995446 28 24.480108935299764 24.627736046584555 25.445052320785027 25.447102697330653 29 24.641907766826353 24.846824811003525 25.205459790909835 25.30580763126028 30 24.70378089435013 25.007236623102198 25.45331413216004 24.835668350387643 31 25.159386623825856 24.754015119717867 24.451765494816165 25.63483276164011 32 24.818119539364815 24.888917835381296 24.514422589842678 25.778540035411208 33 24.62731391023693 24.354734440054226 25.102337911703547 25.915613738005298 34 25.135746988358687 24.616157449621042 25.43425769132425 24.813837870696016 35 25.987979969027254 24.47468146797312 24.915150594126757 24.622187968872872 36 24.738637295625704 25.035519758393278 24.768669281499815 25.457173664481207 37 25.8694802657288 24.82903477921063 24.422035034904646 24.879449920155924 38 24.801234085459694 24.622429189642943 25.102398216896066 25.473938508001293 39 25.257081035705497 24.565561393098193 24.51617144042571 25.661186130770602 40 25.58055808837364 24.687498492370185 25.19924835608045 24.53269506317572 41 24.43252813840283 24.931131470144106 25.72547146599511 24.910868925457958 42 25.763584347666672 25.166804162505606 24.937825346513637 24.131786143314084 43 24.71137934860743 24.164773083621593 25.288138209852423 25.835709357918553 44 24.505618031735004 24.721209094987913 25.104207372671617 25.668965500605463 45 24.641485630478726 24.945604716348495 25.175367499843205 25.237542153329574 46 24.545675481884007 24.662727931150727 25.279409201733653 25.51218738523161 47 24.686835135252487 24.33911539519199 25.73029588139657 25.243753588158956 48 25.358393759136238 25.240255886992895 24.661627564779838 24.739722789091033 49 24.31927498685347 25.09799593784223 25.259191717443642 25.32353735786066 50 24.09186410586697 25.511810168902784 24.915934561629495 25.480391163600753 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 13.0 1 12.0 2 11.0 3 57.0 4 103.0 5 118.0 6 133.0 7 141.0 8 149.0 9 213.0 10 277.0 11 401.0 12 525.0 13 944.0 14 1363.0 15 1803.0 16 2243.0 17 2910.0 18 3577.0 19 4112.5 20 4648.0 21 5812.5 22 6977.0 23 7601.5 24 8226.0 25 10047.5 26 11869.0 27 15124.5 28 18380.0 29 21146.5 30 23913.0 31 25185.5 32 26458.0 33 30673.0 34 34888.0 35 40274.5 36 45661.0 37 55421.5 38 65182.0 39 69730.5 40 74279.0 41 80683.0 42 87087.0 43 87472.5 44 87858.0 45 96343.5 46 104829.0 47 111615.5 48 118402.0 49 121196.0 50 123990.0 51 119345.5 52 114701.0 53 111934.5 54 109168.0 55 111341.0 56 113514.0 57 111425.5 58 109337.0 59 100457.5 60 91578.0 61 81061.0 62 70544.0 63 62547.0 64 54550.0 65 47485.5 66 40421.0 67 35619.5 68 30818.0 69 28403.5 70 25989.0 71 20549.5 72 15110.0 73 13638.5 74 12167.0 75 8982.0 76 5797.0 77 5261.0 78 4725.0 79 4094.0 80 3463.0 81 2757.0 82 2051.0 83 1799.0 84 1547.0 85 1273.5 86 1000.0 87 749.5 88 499.0 89 314.5 90 130.0 91 89.0 92 48.0 93 32.0 94 16.0 95 13.0 96 10.0 97 8.0 98 6.0 99 4.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.013086226776470361 2 0.003437395973542906 3 6.633571177012625E-4 4 2.412207700731864E-4 5 0.0 6 5.427467326646694E-4 7 1.206103850365932E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 6.03051925182966E-5 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1658232.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.7856993234318 #Duplication Level Percentage of deduplicated Percentage of total 1 79.17580368740641 41.001743634470905 2 12.594153087087633 13.043940500023812 3 3.547340828038106 5.511045765555447 4 1.39100422566066 2.8813650635074404 5 0.7728239227146498 2.0010613645827973 6 0.47641797306356504 1.4802982743209163 7 0.3317985386138572 1.2027693549627898 8 0.23866610870977517 0.9887593075470322 9 0.18856109758840092 0.878829147342829 >10 1.071715790104446 10.231253663493602 >50 0.09949898735254308 3.6037810895379905 >100 0.09677022796598125 10.591114943393638 >500 0.01193517894527407 4.121264993174171 >1k 0.0035103467486100205 2.4627728980868047 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1886 0.11373559308950737 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1803 0.10873026211048877 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1798 0.10842873614789728 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1771 0.10680049594990328 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1720 0.10372493113147015 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1710 0.10312187920628718 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1692 0.10203638574095784 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.030519251829659E-5 2 0.0 0.0 0.0 6.030519251829659E-5 6.030519251829659E-5 3 0.0 0.0 0.0 6.030519251829659E-5 6.030519251829659E-5 4 0.0 0.0 0.0 1.2061038503659318E-4 6.030519251829659E-5 5 0.0 0.0 0.0 1.2061038503659318E-4 6.030519251829659E-5 6 0.0 0.0 0.0 1.2061038503659318E-4 6.030519251829659E-5 7 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 8 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 9 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 10 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 11 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 12 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 13 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 14 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 15 0.0 0.0 0.0 1.809155775548898E-4 6.030519251829659E-5 16 0.0 0.0 0.0 1.809155775548898E-4 1.2061038503659318E-4 17 0.0 0.0 0.0 2.4122077007318637E-4 1.2061038503659318E-4 18 0.0 0.0 0.0 4.2213634762807616E-4 1.809155775548898E-4 19 0.0 0.0 0.0 4.8244154014637274E-4 1.809155775548898E-4 20 0.0 0.0 0.0 6.03051925182966E-4 2.4122077007318637E-4 21 0.0 0.0 0.0 7.839675027378558E-4 2.4122077007318637E-4 22 0.0 0.0 0.0 9.648830802927455E-4 2.4122077007318637E-4 23 0.0 0.0 0.0 0.0015679350054757116 2.4122077007318637E-4 24 0.0 0.0 0.0 0.002351902508213567 2.4122077007318637E-4 25 0.0 0.0 0.0 0.002954954433396533 2.4122077007318637E-4 26 0.0 0.0 0.0 0.004221363476280762 3.01525962591483E-4 27 0.0 0.0 0.0 0.005125941364055211 3.618311551097796E-4 28 0.0 0.0 0.0 0.009950356765518939 3.618311551097796E-4 29 0.0 0.0 0.0 0.020443460263702546 3.618311551097796E-4 30 0.0 0.0 0.0 0.03853501801919153 3.618311551097796E-4 31 0.0 0.0 0.0 0.08653795126375562 4.2213634762807616E-4 32 0.0 0.0 0.0 0.141717202417997 4.2213634762807616E-4 33 0.0 0.0 0.0 0.19924835608045194 4.2213634762807616E-4 34 0.0 0.0 0.0 0.26642834054583436 4.2213634762807616E-4 35 0.0 0.0 0.0 0.34114647407600385 4.2213634762807616E-4 36 0.0 0.0 0.0 0.450781314074267 4.2213634762807616E-4 37 0.0 0.0 0.0 0.6116152625205641 4.2213634762807616E-4 38 0.0 0.0 0.0 0.8136376574568577 4.2213634762807616E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACCG 75 5.474467E-5 20.533207 5 GTGCGAA 95 1.5977785E-5 18.526201 11 TAAGTCG 60 0.0074134986 18.333221 5 TATGCCG 60 0.0074134986 18.333221 29 TACCGTA 60 0.0074134986 18.333221 7 CGCAATA 510 0.0 18.117535 36 CGTCGTA 500 0.0 18.039888 10 ACGGGTC 75 0.0012911982 17.599892 9 TTAACGG 265 0.0 17.433855 35 GTATCAA 3625 0.0 17.360798 1 ATACCGT 545 0.0 17.35769 6 CGTCTAT 115 4.2664797E-6 17.22092 1 TACCGTC 590 0.0 17.152437 7 GTCGTAG 535 0.0 16.859709 11 ATTGTCG 275 0.0 16.799896 43 CTCGACG 145 1.2501368E-7 16.689552 13 TAACGGC 265 0.0 16.603672 36 TAGATCG 80 0.0019888526 16.499899 5 ATACGAA 565 0.0 16.353882 40 ACCGTCG 590 0.0 16.0338 8 >>END_MODULE