##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062399_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1199621 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.19090195986899 32.0 32.0 32.0 32.0 32.0 2 31.366182319249162 32.0 32.0 32.0 32.0 32.0 3 31.46786443385036 32.0 32.0 32.0 32.0 32.0 4 31.58033245500037 32.0 32.0 32.0 32.0 32.0 5 31.508978252298018 32.0 32.0 32.0 32.0 32.0 6 35.078208867634025 36.0 36.0 36.0 36.0 36.0 7 35.09135885417144 36.0 36.0 36.0 36.0 36.0 8 35.03798699756006 36.0 36.0 36.0 36.0 36.0 9 35.15356683485868 36.0 36.0 36.0 36.0 36.0 10 35.04050779371151 36.0 36.0 36.0 36.0 36.0 11 35.17969592062826 36.0 36.0 36.0 36.0 36.0 12 35.083575562615195 36.0 36.0 36.0 36.0 36.0 13 35.131922498855886 36.0 36.0 36.0 36.0 36.0 14 35.09127716170357 36.0 36.0 36.0 36.0 36.0 15 35.05328432896723 36.0 36.0 36.0 36.0 36.0 16 35.06273648093856 36.0 36.0 36.0 36.0 36.0 17 35.040355245531714 36.0 36.0 36.0 36.0 36.0 18 35.05942460160334 36.0 36.0 36.0 36.0 36.0 19 35.02271384045461 36.0 36.0 36.0 36.0 36.0 20 35.00835013725168 36.0 36.0 36.0 36.0 36.0 21 34.98679833047271 36.0 36.0 36.0 36.0 36.0 22 34.975248849428276 36.0 36.0 36.0 36.0 36.0 23 34.9406470877052 36.0 36.0 36.0 32.0 36.0 24 34.92484543034842 36.0 36.0 36.0 32.0 36.0 25 34.89219761908136 36.0 36.0 36.0 32.0 36.0 26 34.848988138753825 36.0 36.0 36.0 32.0 36.0 27 34.83045061731997 36.0 36.0 36.0 32.0 36.0 28 34.81665876139214 36.0 36.0 36.0 32.0 36.0 29 34.777073759128925 36.0 36.0 36.0 32.0 36.0 30 34.76240079158334 36.0 36.0 36.0 32.0 36.0 31 34.74717098150166 36.0 36.0 36.0 32.0 36.0 32 34.698000451809364 36.0 36.0 36.0 32.0 36.0 33 34.673666099543105 36.0 36.0 36.0 32.0 36.0 34 34.642743833260674 36.0 36.0 36.0 32.0 36.0 35 34.598468182867755 36.0 36.0 36.0 32.0 36.0 36 34.56253433376041 36.0 36.0 36.0 32.0 36.0 37 34.536450262207815 36.0 36.0 36.0 32.0 36.0 38 34.49153440961771 36.0 36.0 36.0 32.0 36.0 39 34.45749282481717 36.0 36.0 36.0 32.0 36.0 40 34.42386387033905 36.0 36.0 36.0 32.0 36.0 41 34.39617679250363 36.0 36.0 36.0 32.0 36.0 42 34.335685187238305 36.0 36.0 36.0 32.0 36.0 43 34.33555681336022 36.0 36.0 36.0 32.0 36.0 44 34.2946597300314 36.0 36.0 36.0 32.0 36.0 45 34.21432102305645 36.0 36.0 36.0 32.0 36.0 46 34.22903150244952 36.0 36.0 36.0 32.0 36.0 47 34.172561167235315 36.0 36.0 36.0 32.0 36.0 48 34.13154071160808 36.0 36.0 36.0 32.0 36.0 49 34.115892436027714 36.0 36.0 36.0 32.0 36.0 50 33.566801514811765 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 6.0 20 15.0 21 42.0 22 126.0 23 343.0 24 978.0 25 2228.0 26 4627.0 27 8584.0 28 14345.0 29 21725.0 30 30719.0 31 43439.0 32 62874.0 33 99153.0 34 209701.0 35 700714.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.66178277783058 18.463317476118302 11.98186841679631 25.89303132925481 2 15.565322067017684 21.177777925979775 37.51129577079672 25.74560423620582 3 18.328153863595443 25.349947649565525 28.955542143766966 27.366356343072066 4 12.017502252802354 16.353969641977397 36.601515316972 35.02701278824825 5 13.619634868012481 37.56228008679408 33.9163785895712 14.901706455622236 6 33.189648345510854 36.10533379459243 17.239781096435106 13.465236763461611 7 28.980343775528915 31.219886297327488 21.544905886864175 18.254864040279422 8 27.59138094448163 33.35995285177569 20.173954940768795 18.87471126297389 9 27.389400485653386 14.219074190931968 19.10836839301746 39.28315693039718 10 15.394195333359454 27.37572950123414 32.671151972164544 24.558923193241867 11 36.410833088116995 21.456610046006197 22.97342243925373 19.159134426623076 12 24.113782603005447 24.356609295769246 29.84317546958581 21.686432631639494 13 29.685875789103395 20.09726405256327 25.796314002505795 24.420546155827548 14 23.09079284207262 20.298327555119492 26.152759913339295 30.45811968946859 15 24.595768163444955 28.202407260293043 23.46082637766428 23.740998198597723 16 24.721891330678606 26.205443219150048 25.201959618912973 23.870705831258373 17 22.942829443632615 26.49120013737672 26.693847473493708 23.872122945496955 18 23.930141269617657 25.02206947027436 28.23416729116946 22.813621968938524 19 24.73322824458725 25.927522109066114 26.463608089554953 22.875641556791688 20 24.788495699891882 24.788829138536254 27.013281694801943 23.40939346676992 21 25.684278617996853 24.831425925354758 25.38310016246798 24.10119529418041 22 24.601686699382554 25.641931910161624 26.010965129820168 23.74541626063565 23 23.244508057128044 25.22129906028654 26.61640634833835 24.917786534247067 24 23.706070500599775 26.010798410497983 26.507538630950943 23.7755924579513 25 24.08902478366084 25.26631327727674 26.52771166893544 24.11695027012698 26 23.0377760976175 25.972953124361776 27.14198901152948 23.84728176649125 27 24.273749792642842 26.014049437280605 26.18668729540413 23.52551347467242 28 23.382051497931432 25.391519488238366 26.89307706350589 24.33335195032431 29 23.31586392702362 25.910766817186428 26.89132651062294 23.882042745167016 30 23.77976044100595 25.577911690442228 27.013365054463033 23.628962814088784 31 23.75183495453981 25.524061349376176 26.22094811611334 24.503155579970674 32 23.34262237823446 26.061147645798133 26.31356069958762 24.28266927637979 33 23.174485941809955 25.54998620397609 26.883157263835827 24.39237059037813 34 23.454157604776842 25.939775979246775 27.278532136399747 23.327534279576632 35 24.46864468027819 25.665022536284376 26.56547359541055 23.300859188026884 36 23.382801734881266 26.163429949959195 26.620490971731904 23.833277343427632 37 24.268164695349615 25.911183615491893 25.985623792847907 23.835027896310585 38 23.58911689608635 26.01029825253142 26.30005643449056 24.100528416891667 39 23.892212623820356 25.71553849090671 26.286052011426943 24.106196873845988 40 24.409792759546555 25.69278130342833 26.517458430621005 23.379967506404107 41 23.355209687059496 25.860917739852834 27.08105309927052 23.702819473817147 42 24.512741940996367 26.276632369723433 26.389334631521123 22.821291057759076 43 23.38863691115777 25.507806215463052 26.577143947963567 24.52641292541561 44 23.11746793362237 26.041391406119097 26.612655163589167 24.228485496669364 45 23.322616059572148 26.195189980835615 26.461107299722165 24.021086659870075 46 23.21526816825328 25.6369517013721 26.633850719394474 24.513929410980143 47 23.803851383061815 25.375931231613986 26.917418084545037 23.90279930077916 48 23.584282035742955 26.742112717266536 25.778141596387528 23.895463650602984 49 23.00268168029736 26.06831657665213 26.71093620401777 24.218065539032743 50 22.677468994296518 27.17606771488924 25.733941971527603 24.41252131928664 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 116.0 1 107.5 2 99.0 3 334.5 4 570.0 5 563.0 6 556.0 7 482.5 8 409.0 9 547.0 10 685.0 11 1007.5 12 1330.0 13 2218.0 14 3106.0 15 3939.0 16 4772.0 17 5343.5 18 5915.0 19 6323.5 20 6732.0 21 7745.0 22 8758.0 23 9385.0 24 10012.0 25 11176.0 26 12340.0 27 14594.0 28 16848.0 29 19454.5 30 22061.0 31 24554.0 32 27047.0 33 31181.5 34 35316.0 35 40051.5 36 44787.0 37 49792.5 38 54798.0 39 56435.0 40 58072.0 41 61661.5 42 65251.0 43 66424.5 44 67598.0 45 73783.5 46 79969.0 47 84283.0 48 88597.0 49 87782.5 50 86968.0 51 81801.5 52 76635.0 53 74521.5 54 72408.0 55 72299.5 56 72191.0 57 70048.5 58 67906.0 59 61742.5 60 55579.0 61 49114.5 62 42650.0 63 37314.0 64 31978.0 65 27453.5 66 22929.0 67 20098.5 68 17268.0 69 15692.0 70 14116.0 71 11075.5 72 8035.0 73 7098.5 74 6162.0 75 4534.0 76 2906.0 77 2583.0 78 2260.0 79 1932.5 80 1605.0 81 1292.5 82 980.0 83 807.0 84 634.0 85 516.0 86 398.0 87 295.5 88 193.0 89 117.5 90 42.0 91 28.0 92 14.0 93 12.5 94 11.0 95 8.0 96 5.0 97 3.0 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01392106340252463 2 0.0047515006822988265 3 0.001083675594208504 4 3.334386443718474E-4 5 0.0 6 5.001579665577712E-4 7 8.335966109296185E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 8.335966109296185E-5 47 0.0 48 0.0 49 0.0 50 2.500789832788856E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1199621.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.658768102580815 #Duplication Level Percentage of deduplicated Percentage of total 1 80.2440018101737 47.872582956162276 2 12.66199578005839 15.107981399167212 3 3.4153251455417046 6.11262272558357 4 1.2834944395057377 3.0628678850969897 5 0.6298738003234798 1.8788747493694888 6 0.3769086404412252 1.3491543105565242 7 0.25606248613425947 1.069346073603787 8 0.17466649000531764 0.8336310098015198 9 0.1185193048878767 0.6363644153386419 >10 0.6772152022251389 7.515703130471529 >50 0.0798834605270659 3.329431177363954 >100 0.07672347853306104 8.861660235592518 >500 0.004909175197624745 1.9862805876878245 >1k 4.207864455106924E-4 0.3834993442041243 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 1837 0.15313169742777094 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 1690 0.14087782724710554 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.335966109296187E-5 2 0.0 0.0 0.0 0.0 8.335966109296187E-5 3 0.0 0.0 0.0 0.0 8.335966109296187E-5 4 0.0 0.0 0.0 0.0 1.6671932218592373E-4 5 0.0 0.0 0.0 0.0 1.6671932218592373E-4 6 0.0 0.0 0.0 0.0 1.6671932218592373E-4 7 0.0 0.0 0.0 0.0 1.6671932218592373E-4 8 0.0 0.0 0.0 0.0 1.6671932218592373E-4 9 0.0 0.0 0.0 0.0 1.6671932218592373E-4 10 0.0 0.0 0.0 8.335966109296187E-5 2.500789832788856E-4 11 0.0 0.0 0.0 8.335966109296187E-5 2.500789832788856E-4 12 0.0 0.0 0.0 1.6671932218592373E-4 3.3343864437184747E-4 13 0.0 0.0 0.0 1.6671932218592373E-4 5.83517627650733E-4 14 0.0 0.0 0.0 3.3343864437184747E-4 5.83517627650733E-4 15 0.0 0.0 0.0 5.001579665577712E-4 5.83517627650733E-4 16 0.0 0.0 0.0 5.001579665577712E-4 5.83517627650733E-4 17 0.0 0.0 0.0 5.001579665577712E-4 5.83517627650733E-4 18 0.0 0.0 0.0 5.83517627650733E-4 8.335966109296186E-4 19 0.0 0.0 0.0 6.668772887436949E-4 8.335966109296186E-4 20 0.0 0.0 0.0 7.502369498366567E-4 0.0010003159331155424 21 0.0 0.0 0.0 0.001250394916394428 0.0010003159331155424 22 0.0 0.0 0.0 0.002834228477160703 0.0010003159331155424 23 0.0 0.0 0.0 0.005001579665577712 0.001083675594208504 24 0.0 0.0 0.0 0.008669404753668033 0.001083675594208504 25 0.0 0.0 0.0 0.011503633230828737 0.001083675594208504 26 0.0 0.0 0.0 0.015921695268755715 0.0013337545774873899 27 0.0 0.0 0.0 0.020673195951054543 0.0013337545774873899 28 1.6671932218592373E-4 0.0 0.0 0.029259241043629612 0.0013337545774873899 29 1.6671932218592373E-4 0.0 0.0 0.04584781360112902 0.0013337545774873899 30 1.6671932218592373E-4 0.0 0.0 0.07769120413864046 0.0013337545774873899 31 1.6671932218592373E-4 0.0 0.0 0.13821031809213077 0.0014171142385803516 32 1.6671932218592373E-4 0.0 0.0 0.21165017951503015 0.0015838335607662754 33 1.6671932218592373E-4 0.0 0.0 0.2859236375488592 0.0015838335607662754 34 1.6671932218592373E-4 0.0 0.0 0.36444843829842927 0.0016671932218592371 35 1.6671932218592373E-4 0.0 0.0 0.4581446973669184 0.0016671932218592371 36 1.6671932218592373E-4 0.0 0.0 0.5879356896886601 0.0016671932218592371 37 1.6671932218592373E-4 0.0 0.0 0.7829972966461908 0.0016671932218592371 38 1.6671932218592373E-4 0.0 0.0 1.029408454836986 0.001750552882952199 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTAT 110 5.2441465E-9 22.003565 1 ACGATTA 100 4.624235E-8 21.999895 40 CTATGCG 55 0.0044837142 19.999907 38 CGATTAA 110 1.265671E-7 19.999907 41 TAGGACG 635 0.0 19.055027 4 TTAGGAC 500 0.0 18.479914 3 AGGACGT 660 0.0 18.333246 5 GGACGTG 670 0.0 18.059616 6 ACCGTCG 220 0.0 17.999916 8 CGTTTAT 335 0.0 17.731258 31 ATTGTCG 125 4.8526454E-7 17.599916 43 TAGGACC 635 0.0 17.322752 4 GTGTTAG 205 5.456968E-12 17.173513 1 ATCGTTT 315 0.0 16.761826 29 GATATAC 250 0.0 16.72271 1 TACCGTC 250 0.0 16.719921 7 TGTAGGA 645 0.0 16.713795 2 GTCCTAC 700 0.0 16.659842 1 TTAACGG 185 4.2200554E-10 16.648571 35 GACGTGA 410 0.0 16.634068 7 >>END_MODULE