FastQCFastQC Report
Thu 2 Feb 2017
SRR4062382_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062382_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1310
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCTCATGATCGGCCGGGTCAGACCATCTACGACTGGCGGCATTATCT30.22900763358778628No Hit
ATGGAGGTTCCCAGGCTAGGGGTCAAATCGGAGCTGTAGCCACGGGCCCA30.22900763358778628No Hit
CTGCATTTCTAATCATTTCCCAGGTGATGCTAATGCTGCTGGTCCACAGA30.22900763358778628No Hit
GTGTGGTCTCGGCGGCACTGGTGGGCGGTGGCGTGGCACGGCGCCTGTCT30.22900763358778628No Hit
ATCATTTAAGCACAAGAGCAAGGAGTTCATCATCAACACACCATCTATTA30.22900763358778628No Hit
CCTGCTATATTGTGAACAACTATGTTATCAGATCTTTTTATTTCATTGTG20.15267175572519084No Hit
TCCCCGTCATCGGCGCTCAGGCAGGCCGCGTTGAAGAAGATCCGGGCGGA20.15267175572519084No Hit
ACGCCACACTTCTCATCACCCACAGCCTGGGCCTCAGCTCACCACCAATT20.15267175572519084No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA20.15267175572519084No Hit
AAACAAGAAAATAAAGAAACAAGATTTAAACTACCTAGTATCTTTGTAGC20.15267175572519084No Hit
GGCCTGTTCTATCTGCCGCGTCTGTTCGTCTATCACGCCATGAGCAACGA20.15267175572519084No Hit
TCTTACCTTCCAGAAAAGTGGGAAAAGGGGTTGGGGCGCAGAGATAAGAG20.15267175572519084No Hit
GTTAAGGATCCCGAGTTGTCTCTGCTGTGGTGCAGGTTCAGTGCCTGGCC20.15267175572519084No Hit
GCTTGGATTAAAGGCGTGCGCCACCGCGCCATTAAGACTCTCTCCCTTTC20.15267175572519084No Hit
TACTTAGATAGAAATGTAACAGAACGTGTAGAGGATCTGTGTCCTGAAAA20.15267175572519084No Hit
ACGCAGAGTACATGGGACCAACTCAGAGCCAGTTATCATGGCCACATGCT20.15267175572519084No Hit
GGACAGTTCTCAGGAAAAGGGATTTTTTTAATGATATATTAGCCATTGCT20.15267175572519084No Hit
CAGGAAGGACCCGAAGTTCATTGGAGCTTATTGGATTGGTTTCTTCGTAT20.15267175572519084No Hit
AGTAAGTTCCAAGCTTTAAGAAAATAGGCTCTTTTTACAGCTCCCATACT20.15267175572519084No Hit
TACTCATCCTTCAAAGGCTAACAGCTCTCATTCCTCAAGAACTGTCTCTT20.15267175572519084No Hit
CTACAGGTGTGTGCCACCATGCATGGCTAATTTTTGCATTCTTAGTAGAG20.15267175572519084No Hit
GTCCACGCATCGGCCGTGTACACCTCGCCAAGACTGGGAGTTGTCGAATC20.15267175572519084No Hit
ACTTCAAAATCTGATCAACAGAAAGCCTGAGTCTCAGTGCTGTCTCTTAT20.15267175572519084No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTCGTATGCC20.15267175572519084No Hit
CACTTGACGACTTGAAAAATGACGAAATCACTAAAAAACGTGAAAAATGA20.15267175572519084No Hit
CGACTGGCCCCACTTGCCGGTCAGCGCGCGCCAAGCCCCTGTCTCTTATA20.15267175572519084No Hit
GTTTGGCTGTGTTCCCACCAAATCTCGTCTTGAATTTTAATTCTACCTGT20.15267175572519084No Hit
CCTATAGCATCACGGGACAAATAACAGGCCCTGAAAGAAATCAAAGCATT20.15267175572519084No Hit
ACGTATTTAAGAGGAAGTATCACCAGTTTGAAGGATGGCTGAATGTGACA20.15267175572519084No Hit
GGCCGTGGGCGCCGTGCTGCGCCGTGCCGAGATGGTGCCTGTCTCTTATA20.15267175572519084No Hit
CCTGAGTAGCTGGTATTACAGGCGTGCGCCACCATGTACAGCTAACTTTT20.15267175572519084No Hit
CCTGAGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAGGTAGCCTGGCCTA20.15267175572519084No Hit
AGGTACTTGAGTGTGGATGCCAAACACTAAGATAACTTTTCCAGCTTTAG20.15267175572519084No Hit
GCACCGAGGCGCGACACCCGCCTGCCCCGTACTTTCCCGCCATCCCAAGT20.15267175572519084No Hit
GGATGGCACCGAGCCACCCCTCCCCGCGATTGTGCTACGCCTGTCTCTTA20.15267175572519084No Hit
CAGCATTATCTTCTATTACCAATTATCAAACTTCTATTTAGAGTATTAGC20.15267175572519084No Hit
ACATTTCCCTCATGGGTAAGATAAACTTGTTCCTCCCAGGAGCTGTCTCT20.15267175572519084No Hit
GAGTGGAGTGCAATGGAATAGAGTGGAATAGAGACGAGAGAATTGAAATG20.15267175572519084No Hit
CTTCTAGATTTTCTCTGGATGTCACTTCCCCCGTCAATTCTGTCCACTCA20.15267175572519084No Hit
GTTATTGAATGTAGCTGTGGTATCCTCTGATGGTTTCATGGGGGTGGGCT20.15267175572519084No Hit
GAGCAAGGGCTTGGTGGGGAGGAAAGGAGTTCTCCCCCTGTAATGAAGGT20.15267175572519084No Hit
TCACAAGGATTCCTATACACCAACAACAGACAAACAGAGAGCCAAATCAT20.15267175572519084No Hit
CTCAGGATCTGAGCCACGTCTGCAACCTACACCACAGCTCACGGAAATGC20.15267175572519084No Hit
CTATCATGTAAATAGCCAGATTTTGTCATCATCAACAGCAAGCTCTTCAC20.15267175572519084No Hit
ACTGAGCACTTACTGTGTGTTAGGCACTGCACTTTACCTGTCTCTTATAC20.15267175572519084No Hit
GGTCTAATACATTGCCTGAAAGTAGACATATAAGAGACACATATAGAAAT20.15267175572519084No Hit
AAACTGCTCTATCAAAAGGAACTTTTAACTCTGCGAATTGAACACACACA20.15267175572519084No Hit
CAATTATGCTCACAAAGTTGCATGCAAATAAAACTGTCTCTTATACACAT20.15267175572519084No Hit
GTGAAATACAATAGCTAACCCTCCAAAGACGTCATTATGCCTGTCTCTTA20.15267175572519084No Hit
CTTCCAGGGCACAAAGCTTAGGCCGTGTGTGCTTGTCATTTCTGGGTTTG20.15267175572519084No Hit
CCGGGGTCTTCTGCTGACTCTTGCTGTCTCCTGCCAGACAACACCTCCAC20.15267175572519084No Hit
AAACGCAACCGAAGAAGCACCGTCTCCTCATGACCTGTCTCTTATACACA20.15267175572519084No Hit
ACTCTACGATGCTCACCAGTGGTTGTGGGTGCTGCTCCAGAAAATCAGAT20.15267175572519084No Hit
GGGCCACACCCATGGCATATGGAGGTTCCCAGGCTAGGGGTCAAATTGGA20.15267175572519084No Hit
CTCCTTTGTATCTTGTTCCCTTGTAATAAGCACATCTGTGCAGGTCCCCA20.15267175572519084No Hit
CTGAAGAATGCATCAGAGTCTCTTAATAGCAGAATTGATCAAGCAGAGGA20.15267175572519084No Hit
GTGATTAAGTAGAAACTTGCATTAAGTTCGAGAGGTAACCTAAGGAAGCT20.15267175572519084No Hit
CTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTCGTATGCCGT20.15267175572519084No Hit
AAAGAAAGAGTATGATGTCGCCAGTTTGAATTTCAAGAGCTCATCTGTCT20.15267175572519084No Hit
GATGGAAGCCAAAGACGTCCCTGGAGCCGCCTCCCGCTGCACCCTTTCCT20.15267175572519084No Hit
TCTATCTGCTGAAATTACACATCTGATTGTGCATAGTGCCTGTCTCTTAT20.15267175572519084No Hit
GATCAGCATTGGTAATACCGTGAGAGATATCGCGGGAGATTCTTTCTGTC20.15267175572519084No Hit
CATCTGTTATTTGAGACTCTCCTAGGAGGAGCAGAAGGCAGGCGTGCTGG20.15267175572519084No Hit
GAGACAGACTGCTGCCATCTTGATCTTGAACTTCTCAGCTTCCAGAACTA20.15267175572519084No Hit
GTGTCATATCTGGGTCTGTTATTATTAGTTGACTGGCTCACATTTTCCTG20.15267175572519084No Hit
CCGTGAGACCGTTCAGCGCGTGGATGCTATCCATCTCGCGCATCTGTACT20.15267175572519084No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)