FastQCFastQC Report
Thu 2 Feb 2017
SRR4062379_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062379_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2617114
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA39650.024.529151
GGACCGT3250.018.9537496
AACGCGT708.127064E-418.8570446
TTAGGAC7650.018.6927133
ACCGTTA2200.017.9999078
CCGTTTA2450.017.95909127
CGCAATA4900.017.51011536
TAGGACG7050.017.4750884
ATACGAA5350.017.27093740
GGTATCA19300.017.1016251
TAGGACC12900.017.0541744
ATCAACG57350.016.7636453
CTAGCGG5400.016.70361729
AACGCAG57700.016.7000876
GTCCTAC9950.016.5859971
TTATTCG3150.016.06340822
TATCAAC61500.016.0623192
TCAACGC60650.015.8877974
CAACGCA61050.015.7476655
CCGTTAT2403.6379788E-1215.5832539
Produced by FastQC (version 0.11.5)