##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062376_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1751392 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.25457179203742 32.0 32.0 32.0 32.0 32.0 2 31.433237105114102 32.0 32.0 32.0 32.0 32.0 3 31.51558874312547 32.0 32.0 32.0 32.0 32.0 4 31.620623481208092 32.0 32.0 32.0 32.0 32.0 5 31.550278292923572 32.0 32.0 32.0 32.0 32.0 6 35.15652920648262 36.0 36.0 36.0 36.0 36.0 7 35.16374004220643 36.0 36.0 36.0 36.0 36.0 8 35.11477670333084 36.0 36.0 36.0 36.0 36.0 9 35.22538814839853 36.0 36.0 36.0 36.0 36.0 10 35.11108192797501 36.0 36.0 36.0 36.0 36.0 11 35.242077159196796 36.0 36.0 36.0 36.0 36.0 12 35.13725939138696 36.0 36.0 36.0 36.0 36.0 13 35.18282029380059 36.0 36.0 36.0 36.0 36.0 14 35.142665377025814 36.0 36.0 36.0 36.0 36.0 15 35.11116072244249 36.0 36.0 36.0 36.0 36.0 16 35.113043225046134 36.0 36.0 36.0 36.0 36.0 17 35.08296372257039 36.0 36.0 36.0 36.0 36.0 18 35.09494904624436 36.0 36.0 36.0 36.0 36.0 19 35.06570487931885 36.0 36.0 36.0 36.0 36.0 20 35.054240284299574 36.0 36.0 36.0 36.0 36.0 21 35.03573957172352 36.0 36.0 36.0 36.0 36.0 22 35.01793373499479 36.0 36.0 36.0 36.0 36.0 23 34.969267302808284 36.0 36.0 36.0 32.0 36.0 24 34.94012020153112 36.0 36.0 36.0 32.0 36.0 25 34.91737657817325 36.0 36.0 36.0 32.0 36.0 26 34.86769095667903 36.0 36.0 36.0 32.0 36.0 27 34.84337144397142 36.0 36.0 36.0 32.0 36.0 28 34.81065175586048 36.0 36.0 36.0 32.0 36.0 29 34.783036578904095 36.0 36.0 36.0 32.0 36.0 30 34.75881755769125 36.0 36.0 36.0 32.0 36.0 31 34.75958494728764 36.0 36.0 36.0 32.0 36.0 32 34.711792105936304 36.0 36.0 36.0 32.0 36.0 33 34.673442610220896 36.0 36.0 36.0 32.0 36.0 34 34.648347714275275 36.0 36.0 36.0 32.0 36.0 35 34.59809968299501 36.0 36.0 36.0 32.0 36.0 36 34.57016361842466 36.0 36.0 36.0 32.0 36.0 37 34.53890962160384 36.0 36.0 36.0 32.0 36.0 38 34.48065481628328 36.0 36.0 36.0 32.0 36.0 39 34.42415176042827 36.0 36.0 36.0 32.0 36.0 40 34.38901513767335 36.0 36.0 36.0 32.0 36.0 41 34.36189899234437 36.0 36.0 36.0 32.0 36.0 42 34.27419161444154 36.0 36.0 36.0 32.0 36.0 43 34.29404724927372 36.0 36.0 36.0 32.0 36.0 44 34.242508244870365 36.0 36.0 36.0 32.0 36.0 45 34.1483003233999 36.0 36.0 36.0 32.0 36.0 46 34.18239035007583 36.0 36.0 36.0 32.0 36.0 47 34.119055014525586 36.0 36.0 36.0 32.0 36.0 48 34.08869916043924 36.0 36.0 36.0 32.0 36.0 49 34.09602419104347 36.0 36.0 36.0 32.0 36.0 50 33.553165710474865 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 2.0 20 13.0 21 54.0 22 179.0 23 474.0 24 1421.0 25 3286.0 26 6813.0 27 12724.0 28 21295.0 29 31417.0 30 44082.0 31 61489.0 32 89981.0 33 138980.0 34 302880.0 35 1036300.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.48498450138311 18.258330078281148 12.415854045744332 25.840831374591406 2 16.08729018539286 20.538249125796263 36.397309896374594 26.977150792436284 3 18.153103179719317 24.787867402923748 28.320964998478342 28.73806441887859 4 12.28786099245912 16.166501178780017 35.269988871677135 36.27564895708373 5 14.733366373718734 36.43878697630228 32.54948064168387 16.278366008295116 6 34.43311118521124 34.77267121316628 16.989706426460447 13.804511175162043 7 30.496102811993435 30.425530335601813 20.807860723276526 18.27050612912822 8 29.032335422338345 31.39811075989841 19.610515521368146 19.959038296395097 9 27.75700699786227 14.348129944638321 18.879725384151577 39.01513767334783 10 17.060201257057244 25.72228261862564 30.010300378213444 27.207215746103667 11 37.52124024775721 20.751379474155414 21.96932497122289 19.758055306864485 12 25.475107799967112 23.626692368127753 27.742104565968102 23.156095265937036 13 29.744169209406003 18.909987027461586 25.353376057444592 25.992467705687815 14 24.454262666496135 20.126676380844494 24.105911183789807 31.313149768869565 15 25.957238585079757 26.777842995742812 22.460819736529572 24.80409868264786 16 26.598100253969413 25.055727101642578 23.83646836345033 24.509704280937676 17 24.324537282344558 25.45221172644388 25.321458588368568 24.901792402842997 18 25.941822276223714 23.14341963421096 27.0057759770514 23.908982112513932 19 25.90459474520838 25.09615208930953 24.956605945442252 24.042647220039832 20 25.962834134220092 23.161291132995927 25.5173028082805 25.35857192450348 21 27.566472839889645 23.750650910818365 23.723244139518737 24.959632109773256 22 26.016334435694578 24.13897060166999 24.38797253841516 25.45672242422028 23 23.907554676508745 23.68715855730756 25.440792238402366 26.96449452778133 24 24.899051725713033 25.284573641994484 24.71045888070746 25.105915751585023 25 25.376386325848237 23.82150883411595 24.81066488827173 25.991439951764082 26 24.39402486707716 25.026207725055272 25.79354022400468 24.786227183862895 27 26.135325501087138 24.447924850633097 24.561720048966766 24.855029599313003 28 24.577364747583637 23.895906798706402 25.686825108256745 25.83990334545322 29 24.372327839798285 24.445412563263965 25.925149823683103 25.257109773254644 30 24.770239900604775 24.32173950777439 26.281837532659736 24.6261830589611 31 25.198584897041897 24.336413549907732 24.355997971898923 26.109003581151452 32 24.630579561857083 24.53231486725987 24.524435420511228 26.31267015037182 33 24.126294969943906 24.135030878295662 25.39528557855694 26.343388573203484 34 25.00165582576602 24.34440719153679 25.892661380205002 24.761275602492187 35 26.352010286674826 24.05509446200508 25.39979627633334 24.193098974986754 36 24.630750854177705 25.00399682081453 24.880780544846615 25.48447178016115 37 26.303306170177777 24.659756353803147 24.569542398275203 24.467395077743877 38 24.814433319325428 24.526605123239115 24.931711461511757 25.727250095923697 39 25.450555900677863 24.234723008898065 24.618360709652663 25.69636038077141 40 26.05795846960589 24.521180866419396 25.027463868739837 24.393396795234874 41 24.227471633991705 24.948098426851328 25.92406497231916 24.900364966837806 42 26.714464837112423 25.39865432752919 24.634233798030365 23.25264703732802 43 25.222965504010524 23.694181542453087 24.9101286291133 26.172724324423086 44 24.727588112769727 24.509019111655185 25.108599331274778 25.654793444300307 45 24.962715371544462 24.86662037967514 24.96534185379401 25.20532239498639 46 24.55097068669496 24.37899290220505 25.500103061056112 25.56993335004388 47 25.294337304269977 23.92868072938554 25.775326140578464 25.00165582576602 48 25.895173667574134 25.804902614605986 23.79524401162047 24.50467970619941 49 24.40053397526082 25.101918930770495 25.252313588277207 25.245233505691473 50 24.336527744788146 26.29536962598893 23.90036039904259 25.467742230180335 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 31.0 1 30.5 2 30.0 3 118.0 4 206.0 5 230.0 6 254.0 7 276.0 8 298.0 9 392.0 10 486.0 11 716.0 12 946.0 13 1794.5 14 2643.0 15 3739.0 16 4835.0 17 5683.0 18 6531.0 19 7068.0 20 7605.0 21 8210.5 22 8816.0 23 9094.0 24 9372.0 25 9526.5 26 9681.0 27 12244.0 28 14807.0 29 17478.5 30 20150.0 31 22123.5 32 24097.0 33 28881.0 34 33665.0 35 39106.0 36 44547.0 37 54601.0 38 64655.0 39 68763.5 40 72872.0 41 79598.5 42 86325.0 43 86742.0 44 87159.0 45 101014.0 46 114869.0 47 126699.5 48 138530.0 49 138703.0 50 138876.0 51 126228.5 52 113581.0 53 111528.0 54 109475.0 55 115523.5 56 121572.0 57 120903.5 58 120235.0 59 110308.0 60 100381.0 61 89104.5 62 77828.0 63 68440.5 64 59053.0 65 51330.5 66 43608.0 67 38420.0 68 33232.0 69 31848.5 70 30465.0 71 23426.0 72 16387.0 73 15064.5 74 13742.0 75 9472.5 76 5203.0 77 5052.0 78 4901.0 79 4281.0 80 3661.0 81 2899.5 82 2138.0 83 1957.0 84 1776.0 85 1479.0 86 1182.0 87 833.5 88 485.0 89 303.0 90 121.0 91 83.5 92 46.0 93 32.5 94 19.0 95 11.5 96 4.0 97 5.5 98 7.0 99 5.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015302113975626246 2 0.004796184977435091 3 6.280718422831667E-4 4 2.8548720103780306E-4 5 0.0 6 4.567795216604849E-4 7 5.7097440207560615E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.7129232062268186E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1751392.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.85026199712313 #Duplication Level Percentage of deduplicated Percentage of total 1 74.82865054618998 32.06427280795411 2 14.265798333871476 12.225863924090307 3 4.778458420388358 6.142745857680008 4 2.0811758918535856 3.567157289120901 5 1.1201222741150758 2.3998766457322187 6 0.6556173823623719 1.6856025962457408 7 0.41887626763212754 1.2564270468689611 8 0.28564032849024296 0.9791810330200977 9 0.2037842730144273 0.7858988540605331 >10 1.0773940792583956 8.396388010703088 >50 0.11334806374139653 3.4070684856653974 >100 0.13567652605299282 12.594918655344111 >500 0.02461962565084533 7.125950627354224 >1k 0.010837987378904738 7.368648166160298 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 3881 0.22159516544554275 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 3354 0.1915048144561583 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 2939 0.16780937677002064 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2784 0.15895927353784875 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2756 0.15736054521203705 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2747 0.15684666825016902 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2601 0.14851044197986518 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 2480 0.1416016517147503 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 2429 0.13868968226416473 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 2292 0.13086733295572892 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2268 0.12949699439074747 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 2265 0.12932570207012478 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 2193 0.12521468637518043 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 2093 0.11950494235442437 No Hit GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCT 2089 0.11927655259359413 No Hit ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG 1964 0.11213937256764905 No Hit GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA 1952 0.11145420328515833 No Hit CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA 1936 0.11054064424183736 No Hit GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA 1819 0.10386024373755275 No Hit CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTC 1782 0.10174763844987302 No Hit GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT 1770 0.10106246916738229 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.2838976083024246E-4 2 0.0 0.0 0.0 0.0 2.2838976083024246E-4 3 0.0 0.0 0.0 0.0 2.2838976083024246E-4 4 0.0 0.0 0.0 0.0 2.2838976083024246E-4 5 0.0 0.0 0.0 0.0 2.8548720103780306E-4 6 0.0 0.0 0.0 0.0 3.996820814529243E-4 7 0.0 0.0 0.0 0.0 3.996820814529243E-4 8 0.0 0.0 0.0 0.0 3.996820814529243E-4 9 0.0 0.0 0.0 0.0 3.996820814529243E-4 10 0.0 0.0 0.0 0.0 4.567795216604849E-4 11 0.0 0.0 0.0 5.7097440207560615E-5 4.567795216604849E-4 12 0.0 0.0 0.0 5.7097440207560615E-5 8.564616031134092E-4 13 0.0 0.0 0.0 5.7097440207560615E-5 9.135590433209698E-4 14 0.0 0.0 0.0 5.7097440207560615E-5 9.135590433209698E-4 15 0.0 0.0 0.0 5.7097440207560615E-5 9.135590433209698E-4 16 0.0 0.0 0.0 2.2838976083024246E-4 0.001027753923736091 17 0.0 0.0 0.0 4.567795216604849E-4 0.001027753923736091 18 0.0 0.0 0.0 4.567795216604849E-4 0.0010848513639436516 19 0.0 0.0 0.0 4.567795216604849E-4 0.0010848513639436516 20 0.0 0.0 0.0 6.280718422831667E-4 0.0012561436845663335 21 0.0 0.0 0.0 9.135590433209698E-4 0.0012561436845663335 22 0.0 0.0 0.0 0.0016558257660192579 0.0012561436845663335 23 0.0 0.0 0.0 0.0033116515320385158 0.0012561436845663335 24 0.0 0.0 0.0 0.00559554914034094 0.001313241124773894 25 0.0 0.0 0.0 0.006965887705322395 0.001313241124773894 26 0.0 0.0 0.0 0.009934954596115547 0.001484533445396576 27 0.0 0.0 0.0 0.01296111892711626 0.001484533445396576 28 0.0 0.0 0.0 0.019584421991193292 0.001484533445396576 29 0.0 0.0 0.0 0.028320330342950065 0.001484533445396576 30 0.0 0.0 0.0 0.045963439367086294 0.001484533445396576 31 5.7097440207560615E-5 0.0 0.0 0.09049944272898357 0.001484533445396576 32 5.7097440207560615E-5 0.0 0.0 0.13971743618790083 0.0015987283258116973 33 5.7097440207560615E-5 0.0 0.0 0.1833969779466847 0.0016558257660192579 34 5.7097440207560615E-5 0.0 0.0 0.23929537190988653 0.001770020646434379 35 5.7097440207560615E-5 0.0 0.0 0.3037583819042225 0.001770020646434379 36 5.7097440207560615E-5 0.0 0.0 0.39928239937147136 0.001770020646434379 37 5.7097440207560615E-5 0.0 0.0 0.5342036505819371 0.001770020646434379 38 5.7097440207560615E-5 0.0 0.0 0.7011565657488443 0.001770020646434379 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCGTA 50 2.3618813E-6 30.80062 7 TATGCGT 65 4.9336586E-4 20.307522 39 ACCGTAT 55 0.004484621 19.99983 8 TTAACGG 270 0.0 19.555391 35 TAGGACG 630 0.0 18.508308 4 TCGTATA 60 0.0074137575 18.33318 44 TAACGGC 280 0.0 18.071276 36 GCCTTAA 110 2.793533E-6 18.002932 1 GTCCTAA 490 0.0 17.96211 1 GATATAC 270 0.0 17.928846 1 CATAATG 215 0.0 17.395203 22 GTATAAT 115 4.268468E-6 17.220196 1 TAGGACA 295 0.0 17.152887 4 CGCACGA 90 2.2162293E-4 17.110966 28 CGAAAAA 690 0.0 16.898409 24 GGACGTG 640 0.0 16.84409 6 CGTCGTA 760 0.0 16.789331 10 CGCAATA 820 0.0 16.634007 36 ACCGTCG 730 0.0 16.575203 8 CCTATAT 80 0.0019881835 16.500803 2 >>END_MODULE