##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062374_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 793359 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.161871233577738 32.0 32.0 32.0 32.0 32.0 2 31.330168309680737 32.0 32.0 32.0 32.0 32.0 3 31.455473499386784 32.0 32.0 32.0 32.0 32.0 4 31.586976387738716 32.0 32.0 32.0 32.0 32.0 5 31.508483549061648 32.0 32.0 32.0 32.0 32.0 6 35.09963963350766 36.0 36.0 36.0 36.0 36.0 7 35.122169156712154 36.0 36.0 36.0 36.0 36.0 8 35.05973966388483 36.0 36.0 36.0 36.0 36.0 9 35.19679489361059 36.0 36.0 36.0 36.0 36.0 10 35.05912707866174 36.0 36.0 36.0 36.0 36.0 11 35.19546132331013 36.0 36.0 36.0 36.0 36.0 12 35.106004973788664 36.0 36.0 36.0 36.0 36.0 13 35.15236733937599 36.0 36.0 36.0 36.0 36.0 14 35.104072683362766 36.0 36.0 36.0 36.0 36.0 15 35.064163890495976 36.0 36.0 36.0 36.0 36.0 16 35.082117931478685 36.0 36.0 36.0 36.0 36.0 17 35.049988718852376 36.0 36.0 36.0 36.0 36.0 18 35.06058417437755 36.0 36.0 36.0 36.0 36.0 19 35.02695501027908 36.0 36.0 36.0 36.0 36.0 20 35.01768808320067 36.0 36.0 36.0 36.0 36.0 21 34.998484922966774 36.0 36.0 36.0 36.0 36.0 22 34.970734560268426 36.0 36.0 36.0 36.0 36.0 23 34.90311699999622 36.0 36.0 36.0 32.0 36.0 24 34.88797883429822 36.0 36.0 36.0 32.0 36.0 25 34.8618645531216 36.0 36.0 36.0 32.0 36.0 26 34.8073041334377 36.0 36.0 36.0 32.0 36.0 27 34.77358925782653 36.0 36.0 36.0 32.0 36.0 28 34.74228816966846 36.0 36.0 36.0 32.0 36.0 29 34.713732370843466 36.0 36.0 36.0 32.0 36.0 30 34.6937968813614 36.0 36.0 36.0 32.0 36.0 31 34.67733522907032 36.0 36.0 36.0 32.0 36.0 32 34.62603310733224 36.0 36.0 36.0 32.0 36.0 33 34.586110449367816 36.0 36.0 36.0 32.0 36.0 34 34.55847730976771 36.0 36.0 36.0 32.0 36.0 35 34.48656787154365 36.0 36.0 36.0 32.0 36.0 36 34.46117457544441 36.0 36.0 36.0 32.0 36.0 37 34.409614058704825 36.0 36.0 36.0 32.0 36.0 38 34.357567003084355 36.0 36.0 36.0 32.0 36.0 39 34.25607700927323 36.0 36.0 36.0 32.0 36.0 40 34.196929763196735 36.0 36.0 36.0 32.0 36.0 41 34.19155892855567 36.0 36.0 36.0 32.0 36.0 42 34.07786512789292 36.0 36.0 36.0 32.0 36.0 43 34.10110555246742 36.0 36.0 36.0 32.0 36.0 44 34.06568653030973 36.0 36.0 36.0 32.0 36.0 45 33.92243864379178 36.0 36.0 36.0 32.0 36.0 46 34.0118181050445 36.0 36.0 36.0 32.0 36.0 47 33.918475746793064 36.0 36.0 36.0 32.0 36.0 48 33.91388513901021 36.0 36.0 36.0 32.0 36.0 49 33.93463488786287 36.0 36.0 36.0 32.0 36.0 50 33.36370672041283 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 6.0 21 21.0 22 74.0 23 265.0 24 680.0 25 1668.0 26 3489.0 27 6625.0 28 10989.0 29 15901.0 30 21870.0 31 30424.0 32 44453.0 33 66116.0 34 139780.0 35 450993.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.36048424611684 17.86309949283502 12.1556970020158 25.620719259032338 2 15.337277927499803 21.031813059514295 36.933300727825525 26.697608285160374 3 18.37883010463186 25.738227497721695 28.548704044731664 27.33423835291478 4 12.185591569978131 16.4307277322258 35.94355616338209 35.440124534413975 5 13.79715866335417 37.3775302227617 33.80096526288855 15.024345850995577 6 33.75596831687162 35.14928985222271 17.39219215585437 13.702549675051301 7 29.100949255003094 30.83559901633435 21.903703115487442 18.15974861317512 8 28.413114365627667 32.55726600441918 20.125441319755623 18.90417831019753 9 27.264706141860117 14.565159026367635 18.384237148630064 39.78589768314219 10 15.524749829522321 27.419112911052878 32.31008912736857 24.74604813205623 11 37.03770928419542 21.40014797840574 21.844839473680892 19.717303263717938 12 23.853009797582178 23.996828674030294 29.556732828391684 22.59342869999584 13 30.105790695006927 20.002924275138998 25.31590364513417 24.575381384719904 14 23.967207783613723 19.484999855046706 25.404892362726077 31.142899998613487 15 25.507368038933194 26.439228646804285 24.0171221351242 24.03628117913832 16 25.88273404599935 25.545686126961435 24.441646215647644 24.129933611391564 17 23.677931428268916 25.576315388115596 26.537040608350065 24.208712575265423 18 24.92692463311061 24.32631381253632 27.300377256702202 23.446384297650873 19 24.639412926556577 26.681237623824778 25.501821999876473 23.177527449742172 20 24.77327414197104 24.112035030799422 27.18025509258734 23.934435734642197 21 25.985461814890865 24.993477101791246 24.34610308826143 24.674957995056463 22 24.53706329669166 25.228931669017427 25.431866279956488 24.80213875433442 23 23.908092049122782 24.551432579702254 25.467537394798573 26.07293797637639 24 23.69368722104369 26.328559958354287 25.262207903357748 24.715544917244276 25 25.163891756443174 24.4861405744436 25.19452101759733 25.155446651515895 26 23.75091226040166 24.989443618840905 26.188396425829918 25.071247694927518 27 25.319685035400113 25.508880595039575 25.428084889690545 23.743349479869767 28 24.385681639711656 24.18879725319811 26.056425905548437 25.369095201541796 29 23.71208998700462 25.566483773424135 26.683254365299945 24.038171874271296 30 25.123178787913165 24.759661137013634 26.408347292965733 23.70881278210747 31 23.71410672847979 25.125069483046136 25.768914198994402 25.391909589479667 32 23.81154055099898 25.555013556284102 25.73110029633495 24.902345596381966 33 23.812044736367774 24.913311628153206 25.792610911327657 25.48203272415136 34 23.883008827025346 25.619927422516163 26.656028355385143 23.841035395073355 35 25.505855482826817 24.90272373540856 25.862314538563247 23.729106243201375 36 24.30589430510021 25.611356271246688 25.668077125235868 24.414672298417237 37 25.37035566496378 25.362540791747495 25.663161317890136 23.60394222539859 38 24.217661865561492 25.38157378941942 25.389892848004497 25.01087149701459 39 24.02947467665962 25.4999313047435 25.811391816315187 24.65920220228169 40 25.093053712127798 25.331281298882345 25.44812625810005 24.1275387308898 41 23.322228650585675 25.524636387814343 26.420069602790164 24.73306535880982 42 25.51556105117608 25.621566024964736 25.50358664866725 23.359286275191938 43 24.592019501890064 24.4239997277399 25.48203272415136 25.501948046218676 44 24.34736355168341 25.086121163306903 26.357550617059864 24.208964667949818 45 24.594288336049633 25.362918930774086 25.72139472798569 24.321398005190588 46 24.071196015927214 25.3137608573168 26.041678483511248 24.573364643244737 47 24.51702192828215 24.74957742963778 26.67859065063861 24.054809991441452 48 24.43509180585334 26.9349689106697 24.645967336350882 23.983971947126083 49 23.437687100039202 25.49438526568678 26.67468321403047 24.393244420243544 50 23.564363673948364 26.87106341517522 24.571347901769563 24.993225009106848 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 32.0 1 36.5 2 41.0 3 143.0 4 245.0 5 262.0 6 279.0 7 247.0 8 215.0 9 280.0 10 345.0 11 495.5 12 646.0 13 1100.5 14 1555.0 15 2089.0 16 2623.0 17 3032.0 18 3441.0 19 3690.5 20 3940.0 21 4544.5 22 5149.0 23 5465.0 24 5781.0 25 6435.0 26 7089.0 27 8609.5 28 10130.0 29 11089.0 30 12048.0 31 12618.5 32 13189.0 33 14908.0 34 16627.0 35 18741.0 36 20855.0 37 25020.0 38 29185.0 39 31373.0 40 33561.0 41 37499.5 42 41438.0 43 42942.5 44 44447.0 45 50824.5 46 57202.0 47 61921.5 48 66641.0 49 64661.0 50 62681.0 51 58547.0 52 54413.0 53 53003.0 54 51593.0 55 51994.5 56 52396.0 57 50747.5 58 49099.0 59 45254.5 60 41410.0 61 36643.5 62 31877.0 63 27270.0 64 22663.0 65 19337.5 66 16012.0 67 13635.5 68 11259.0 69 10024.0 70 8789.0 71 6819.5 72 4850.0 73 4384.0 74 3918.0 75 2839.0 76 1760.0 77 1577.5 78 1395.0 79 1217.5 80 1040.0 81 836.5 82 633.0 83 524.5 84 416.0 85 336.0 86 256.0 87 188.0 88 120.0 89 80.5 90 41.0 91 29.0 92 17.0 93 11.0 94 5.0 95 5.5 96 6.0 97 5.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015881839116969745 2 0.004663714661332385 3 7.562780531890355E-4 4 5.041853687926903E-4 5 0.0 6 3.7813902659451776E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 793359.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.35986732707488 #Duplication Level Percentage of deduplicated Percentage of total 1 80.92639018909136 48.847061750726496 2 12.060364036822852 14.559239463577054 3 3.2729218129855546 5.926593792110923 4 1.266386287097935 3.057556330962333 5 0.6663511001406163 2.0110431998868994 6 0.3938298835938675 1.426291171389791 7 0.2528298774739475 1.0682544502453646 8 0.16778110908249305 0.8101796387367008 9 0.11948323194697642 0.649079282531665 >10 0.7146988712196737 8.215667263441386 >50 0.08388647884629748 3.6223258057618364 >100 0.07088286909350383 7.808480209272083 >500 0.003774827344420795 1.3911390965741504 >1k 4.194252604911994E-4 0.6070885447834053 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 2566 0.32343491408051084 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 2230 0.28108334310192484 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 863 0.10877799331702294 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 797 0.10045893473194356 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 1.2604634219817257E-4 6 0.0 0.0 0.0 0.0 2.5209268439634514E-4 7 0.0 0.0 0.0 0.0 2.5209268439634514E-4 8 0.0 0.0 0.0 0.0 2.5209268439634514E-4 9 0.0 0.0 0.0 1.2604634219817257E-4 2.5209268439634514E-4 10 0.0 0.0 0.0 1.2604634219817257E-4 3.7813902659451776E-4 11 0.0 0.0 0.0 1.2604634219817257E-4 3.7813902659451776E-4 12 0.0 0.0 0.0 2.5209268439634514E-4 5.041853687926903E-4 13 0.0 0.0 0.0 3.7813902659451776E-4 6.30231710990863E-4 14 0.0 0.0 0.0 3.7813902659451776E-4 6.30231710990863E-4 15 0.0 0.0 0.0 3.7813902659451776E-4 0.0010083707375853805 16 0.0 0.0 0.0 3.7813902659451776E-4 0.0010083707375853805 17 0.0 0.0 0.0 3.7813902659451776E-4 0.0010083707375853805 18 0.0 0.0 0.0 6.30231710990863E-4 0.0010083707375853805 19 0.0 0.0 0.0 7.562780531890355E-4 0.0010083707375853805 20 0.0 0.0 0.0 7.562780531890355E-4 0.0010083707375853805 21 0.0 0.0 0.0 0.0017646487907744162 0.0010083707375853805 22 0.0 0.0 0.0 0.003277204897152487 0.0010083707375853805 23 0.0 0.0 0.0 0.006932548820899492 0.0010083707375853805 24 0.0 0.0 0.0 0.012100448851024568 0.0010083707375853805 25 0.0 0.0 0.0 0.015125561063780709 0.0010083707375853805 26 0.0 0.0 0.0 0.01953718304071675 0.0011344170797835532 27 0.0 0.0 0.0 0.024200897702049137 0.001260463421981726 28 0.0 0.0 0.0 0.03214181726053401 0.001260463421981726 29 0.0 0.0 0.0 0.0418473856097933 0.001260463421981726 30 0.0 0.0 0.0 0.06403154183667167 0.001260463421981726 31 0.0 0.0 0.0 0.10146730546952892 0.001260463421981726 32 0.0 0.0 0.0 0.14873468379384364 0.001260463421981726 33 0.0 0.0 0.0 0.19385927430078942 0.001260463421981726 34 0.0 0.0 0.0 0.24793315510380545 0.001512556106378071 35 0.0 0.0 0.0 0.31209074328267533 0.001512556106378071 36 0.0 0.0 0.0 0.40297015600755776 0.001512556106378071 37 0.0 0.0 0.0 0.5307811469965047 0.001512556106378071 38 0.0 0.0 0.0 0.6787595527371594 0.001512556106378071 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCACGAC 30 0.005743958 29.333208 3 GATATAT 125 4.0017767E-11 22.882788 1 TATGGCG 50 0.002579728 21.999907 16 ATACCGT 120 5.984475E-10 21.999907 6 ACCGTCG 125 9.949872E-10 21.11991 8 TACCGTC 125 9.949872E-10 21.11991 7 TTAGGAC 85 6.109296E-6 20.705793 3 GTCGTAT 55 0.004482388 19.999914 43 CGTCGTA 135 2.593879E-9 19.555471 10 CAATAGG 80 8.975213E-5 19.252344 1 TAACGGC 115 2.0192965E-7 19.130352 36 TCGTTAA 150 4.638423E-10 19.066586 12 CAACGGA 105 1.7911789E-6 18.857061 14 GTATTAG 200 0.0 18.702276 1 GTATAAT 95 1.5943093E-5 18.528572 1 CGCAATC 95 1.5960417E-5 18.526236 44 CCGTCGT 155 7.203198E-10 18.451534 9 GTGCACG 85 1.4300946E-4 18.117569 9 AACGGAC 110 2.7940823E-6 17.999924 15 GTATTAT 100 2.4786747E-5 17.602142 1 >>END_MODULE