##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062370_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1702202 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23154654970444 32.0 32.0 32.0 32.0 32.0 2 31.328079158642748 32.0 32.0 32.0 32.0 32.0 3 31.443267602787447 32.0 32.0 32.0 32.0 32.0 4 31.56392719547974 32.0 32.0 32.0 32.0 32.0 5 31.47617145321178 32.0 32.0 32.0 32.0 32.0 6 35.056165484472466 36.0 36.0 36.0 36.0 36.0 7 35.077278724851695 36.0 36.0 36.0 36.0 36.0 8 35.01103276814385 36.0 36.0 36.0 36.0 36.0 9 35.16673696776293 36.0 36.0 36.0 36.0 36.0 10 35.01284218911739 36.0 36.0 36.0 36.0 36.0 11 35.16393530262566 36.0 36.0 36.0 36.0 36.0 12 35.067371557547226 36.0 36.0 36.0 36.0 36.0 13 35.119945223892344 36.0 36.0 36.0 36.0 36.0 14 35.07983130086794 36.0 36.0 36.0 36.0 36.0 15 35.03242388388687 36.0 36.0 36.0 36.0 36.0 16 35.04747850137645 36.0 36.0 36.0 36.0 36.0 17 35.021669578581154 36.0 36.0 36.0 36.0 36.0 18 35.03954113554091 36.0 36.0 36.0 36.0 36.0 19 35.01894546005703 36.0 36.0 36.0 36.0 36.0 20 35.006042173608066 36.0 36.0 36.0 36.0 36.0 21 35.00353483311616 36.0 36.0 36.0 36.0 36.0 22 34.98336448905594 36.0 36.0 36.0 36.0 36.0 23 34.93914882017528 36.0 36.0 36.0 32.0 36.0 24 34.91427926885293 36.0 36.0 36.0 32.0 36.0 25 34.895306784976164 36.0 36.0 36.0 32.0 36.0 26 34.840298037483215 36.0 36.0 36.0 32.0 36.0 27 34.823337065753655 36.0 36.0 36.0 32.0 36.0 28 34.81289294690055 36.0 36.0 36.0 32.0 36.0 29 34.78147423161293 36.0 36.0 36.0 32.0 36.0 30 34.77137143535256 36.0 36.0 36.0 32.0 36.0 31 34.768110952754135 36.0 36.0 36.0 32.0 36.0 32 34.72697893669494 36.0 36.0 36.0 32.0 36.0 33 34.70485347802435 36.0 36.0 36.0 32.0 36.0 34 34.692676309862165 36.0 36.0 36.0 32.0 36.0 35 34.65741022510842 36.0 36.0 36.0 32.0 36.0 36 34.62540638537612 36.0 36.0 36.0 32.0 36.0 37 34.60523780373892 36.0 36.0 36.0 32.0 36.0 38 34.57122656417981 36.0 36.0 36.0 32.0 36.0 39 34.548560629114526 36.0 36.0 36.0 32.0 36.0 40 34.530178556951526 36.0 36.0 36.0 32.0 36.0 41 34.49997297618027 36.0 36.0 36.0 32.0 36.0 42 34.46876340175843 36.0 36.0 36.0 32.0 36.0 43 34.46409298073907 36.0 36.0 36.0 32.0 36.0 44 34.432467474483055 36.0 36.0 36.0 32.0 36.0 45 34.36724019828434 36.0 36.0 36.0 32.0 36.0 46 34.38791870765044 36.0 36.0 36.0 32.0 36.0 47 34.34851739100295 36.0 36.0 36.0 32.0 36.0 48 34.31605767118121 36.0 36.0 36.0 32.0 36.0 49 34.31052718772508 36.0 36.0 36.0 32.0 36.0 50 33.76847401189753 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 13.0 21 40.0 22 157.0 23 404.0 24 1170.0 25 2646.0 26 5871.0 27 10900.0 28 18393.0 29 27943.0 30 40920.0 31 58586.0 32 88433.0 33 142674.0 34 311890.0 35 992156.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.904859496129724 17.88952175920975 11.806955097282758 26.398663647377766 2 16.141835905004065 20.485730869918736 36.78830598730066 26.584127237776535 3 18.53667592335299 24.49757459935507 28.368992235310568 28.596757241981376 4 12.47415109857831 15.969098813300434 35.87739396075667 35.679356127364585 5 14.477952675416903 36.64177342054586 33.433223553961284 15.44705035007596 6 34.457039293382955 35.184746753456565 16.76829035451285 13.58992359864763 7 30.154353008632345 30.370661061378147 21.007847482261212 18.467138447728296 8 28.181026693659156 32.80121865677516 19.54527136027334 19.472483289292338 9 27.397512163656252 14.403695918580755 18.387359432076806 39.81143248568619 10 15.67875023058368 26.877421128632207 31.853681290469638 25.590147350314474 11 37.254685401615085 21.15036875764451 22.26715748189698 19.327788358843428 12 24.653771996508052 23.52875863146677 28.944684590900494 22.872784781124682 13 29.527752875393166 19.640559698555165 25.38141771658123 25.45026970947044 14 23.614706127709873 19.540454070668464 25.120696603575837 31.724143198045823 15 25.182087672320915 27.141667087689946 22.501442249509754 25.17480299047939 16 25.798935731481926 25.739718317802467 23.884474345582955 24.57687160513265 17 24.101604862407637 25.76503846194517 25.430530571577286 24.702826104069906 18 24.821965900639288 24.783133846629248 26.463721696954885 23.931178555776576 19 25.487456835322718 25.327487571980296 25.28994796152278 23.89510763117421 20 25.439636423879186 24.416314867448165 25.492979094138065 24.651069614534585 21 26.303634938744054 24.445806079419484 24.46560396474684 24.78495501708963 22 25.44697985315491 24.683968177689838 24.958259947996773 24.910792021158475 23 24.252644515750774 24.438051418104315 25.549082893804613 25.760221172340298 24 24.656709368218344 25.187081204228406 25.167753298374695 24.98845612917856 25 24.92336397207852 24.651774583745052 25.28354449119435 25.14131695298208 26 24.410263881724966 25.077106007395127 25.73407856411871 24.778551546761197 27 25.245946133302628 25.04761479542381 24.968129516943346 24.738309554330215 28 24.484755628297933 24.609770168287902 25.69460028833241 25.21087391508176 29 24.50314357520435 25.07493235232951 25.630271847877044 24.791652224589093 30 24.74201064268518 24.940811960037646 25.730083738592718 24.587093658684456 31 24.84846099346611 24.847403539650408 25.089971695486202 25.214163771397285 32 24.5703506399358 25.030695534372537 25.031165513846183 25.36778831184548 33 24.295001415813164 24.75211520136858 25.499147574729676 25.453735808088584 34 24.747415406632115 24.935642185827533 25.827017005032303 24.489925402508046 35 25.49891258499285 24.79799694748332 25.372488106581947 24.330602360941885 36 24.64031883407492 25.13761586462711 25.31209574421837 24.909969557079595 37 25.40092186473756 24.966778325956614 24.984226313915737 24.648073495390086 38 24.524057661781622 24.985166272863033 25.27161876205057 25.21915730330478 39 24.85128087030799 24.857801835504834 25.130624919956624 25.160292374230554 40 25.328545025796 24.904623540566867 25.324961432309443 24.441870001327693 41 24.326783777718507 25.054840729831124 25.791827291943026 24.826548200507343 42 25.454910756772698 25.22979058889603 25.233080445211552 24.082218209119716 43 24.781958897945135 24.442809960274985 25.36978572460848 25.405445417171407 44 24.47964460152203 24.85803682524166 25.48980673269095 25.172511840545365 45 24.574345465461796 25.14666296949481 25.371724389937267 24.907267175106128 46 24.447420984608154 24.777405710257312 25.53389730936435 25.24127599577018 47 24.746299205382204 24.580807683224435 25.8653790795687 24.80751403182466 48 24.967894527206525 25.568587041960946 24.851104628005373 24.612413802827163 49 24.21469367325382 25.124750176536036 25.60818281261566 25.05237333759448 50 24.124810098918932 25.79529339056117 24.921719043920756 25.158177466599145 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 68.0 1 69.0 2 70.0 3 196.0 4 322.0 5 365.5 6 409.0 7 352.5 8 296.0 9 383.5 10 471.0 11 689.0 12 907.0 13 1589.0 14 2271.0 15 2958.0 16 3645.0 17 4230.0 18 4815.0 19 5124.5 20 5434.0 21 6353.5 22 7273.0 23 8013.0 24 8753.0 25 10464.5 26 12176.0 27 14762.0 28 17348.0 29 20145.0 30 22942.0 31 25456.0 32 27970.0 33 32712.5 34 37455.0 35 43046.5 36 48638.0 37 56925.5 38 65213.0 39 69707.5 40 74202.0 41 81467.5 42 88733.0 43 90585.0 44 92437.0 45 102171.0 46 111905.0 47 119425.5 48 126946.0 49 129034.5 50 131123.0 51 126462.0 52 121801.0 53 119831.0 54 117861.0 55 118278.0 56 118695.0 57 114857.0 58 111019.0 59 101823.0 60 92627.0 61 82033.0 62 71439.0 63 62327.0 64 53215.0 65 45219.0 66 37223.0 67 32771.0 68 28319.0 69 25371.5 70 22424.0 71 17437.0 72 12450.0 73 10927.0 74 9404.0 75 6993.0 76 4582.0 77 4068.5 78 3555.0 79 2973.5 80 2392.0 81 1888.5 82 1385.0 83 1190.5 84 996.0 85 789.5 86 583.0 87 425.0 88 267.0 89 177.0 90 87.0 91 52.5 92 18.0 93 16.5 94 15.0 95 12.5 96 10.0 97 10.5 98 11.0 99 6.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01503934315668763 2 0.0038773306575835297 3 5.287269078522995E-4 4 1.1749486841162211E-4 5 0.0 6 4.1123203944067743E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.1749486841162211E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1702202.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.21084184806505 #Duplication Level Percentage of deduplicated Percentage of total 1 79.7863623362818 46.44431319589714 2 12.489014536384817 14.53992100031364 3 3.4757859079878806 6.069852713628471 4 1.4296919275685196 3.328942827485855 5 0.7320459888992157 2.130650664266131 6 0.43114229622143235 1.5058293611614448 7 0.3104407723483381 1.264971309165219 8 0.20972175274476035 0.9766463824899398 9 0.160630644358106 0.8415400531214241 >10 0.826903260872561 8.756932038772192 >50 0.07493173382091459 3.019625650988642 >100 0.06633100674713421 7.96369492025303 >500 0.005679402939362142 2.2065377206408336 >1k 0.0013184328252090686 0.9505421618160868 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 5.874743420581106E-5 6 0.0 0.0 0.0 0.0 5.874743420581106E-5 7 0.0 0.0 0.0 0.0 5.874743420581106E-5 8 0.0 0.0 0.0 0.0 5.874743420581106E-5 9 0.0 0.0 0.0 0.0 5.874743420581106E-5 10 0.0 0.0 0.0 0.0 1.1749486841162212E-4 11 0.0 0.0 0.0 0.0 1.1749486841162212E-4 12 0.0 0.0 0.0 0.0 3.5248460523486637E-4 13 0.0 0.0 0.0 0.0 3.5248460523486637E-4 14 0.0 0.0 0.0 0.0 3.5248460523486637E-4 15 0.0 0.0 0.0 0.0 4.1123203944067743E-4 16 0.0 0.0 0.0 5.874743420581106E-5 5.287269078522995E-4 17 0.0 0.0 0.0 5.874743420581106E-5 5.287269078522995E-4 18 0.0 0.0 0.0 1.1749486841162212E-4 5.874743420581106E-4 19 0.0 0.0 0.0 1.7624230261743318E-4 5.874743420581106E-4 20 0.0 0.0 0.0 2.937371710290553E-4 7.637166446755437E-4 21 0.0 0.0 0.0 5.287269078522995E-4 8.224640788813549E-4 22 0.0 0.0 0.0 7.637166446755437E-4 8.224640788813549E-4 23 0.0 0.0 0.0 0.001997412762997576 8.812115130871659E-4 24 0.0 0.0 0.0 0.004229815262818396 8.812115130871659E-4 25 0.0 0.0 0.0 0.005111026775905562 8.812115130871659E-4 26 0.0 0.0 0.0 0.0061684805916101615 8.812115130871659E-4 27 0.0 0.0 0.0 0.008107145920401926 9.39958947292977E-4 28 0.0 0.0 0.0 0.013511909867336544 9.39958947292977E-4 29 0.0 0.0 0.0 0.020855339143062927 9.39958947292977E-4 30 0.0 0.0 0.0 0.0366583989444261 9.39958947292977E-4 31 0.0 0.0 0.0 0.07231809150735341 9.39958947292977E-4 32 0.0 0.0 0.0 0.11614367742488847 9.39958947292977E-4 33 0.0 0.0 0.0 0.15844183005307244 9.39958947292977E-4 34 0.0 0.0 0.0 0.2082009068253944 9.39958947292977E-4 35 0.0 0.0 0.0 0.2662433718207357 9.39958947292977E-4 36 0.0 0.0 0.0 0.34660986181428527 9.39958947292977E-4 37 0.0 0.0 0.0 0.4699207262122827 9.39958947292977E-4 38 0.0 0.0 0.0 0.6279513242259145 9.39958947292977E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTAGTA 105 7.748713E-8 20.952898 2 ACCGTAT 55 0.0044844714 19.999907 8 TACCGTA 55 0.0044844714 19.999907 7 GTATTAT 150 4.656613E-10 19.069939 1 GTCCTAA 375 0.0 18.189789 1 ATAGGGG 110 2.7979113E-6 17.999916 3 GTATTAG 490 0.0 17.962263 1 CGAATGT 120 6.4099077E-6 16.499924 33 GTATAGC 230 1.8189894E-12 16.263659 1 ACGGGAT 95 3.3474376E-4 16.21045 43 CGTCTTA 275 0.0 15.999926 15 GATATAC 235 3.6379788E-12 15.917624 1 CGCAATA 350 0.0 15.714212 36 TTAACGG 225 2.5465852E-11 15.644372 35 GTATAGG 155 2.6638918E-7 15.615582 1 CATGGGT 1405 0.0 15.501707 4 GAGCGAA 445 0.0 15.325772 16 CGTCCAA 115 8.221007E-5 15.3042755 10 ACCGTCG 375 0.0 15.2532625 8 ACACGCT 505 0.0 15.247452 9 >>END_MODULE