FastQCFastQC Report
Thu 2 Feb 2017
SRR4062362_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062362_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2108368
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGCGA1158.780262E-921.043410
ATTAGCG550.004484796419.99992644
TATGCCG550.004484796419.9999265
CGCGAAC901.0025722E-519.55548112
TATACCG1002.4845152E-517.5999345
TAGGACG2201.8189894E-1216.9999374
GGCGTTA4950.016.44438242
ACGCGAA1105.6246077E-515.99994111
ATCGTTT5200.015.65378729
CGTTTAT5350.015.62610931
CCACGCG1704.4952685E-815.5293539
ATTGTCG2850.015.43853843
CGACCAT5850.015.41874510
TCTATAC3000.015.39994053
GTCTAAA3050.015.151
CGTCGTA3200.015.12494410
ACCGTCC1603.827481E-715.1249448
TACCGTC3350.015.1044217
TCGACGC1756.416485E-815.08565714
GTATTAG6750.014.9950261
Produced by FastQC (version 0.11.5)