##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062362_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2108368 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.180737423447898 32.0 32.0 32.0 32.0 32.0 2 31.24689997192141 32.0 32.0 32.0 32.0 32.0 3 31.39547697555645 32.0 32.0 32.0 32.0 32.0 4 31.540374355899917 32.0 32.0 32.0 32.0 32.0 5 31.430729834639873 32.0 32.0 32.0 32.0 32.0 6 35.02390616818316 36.0 36.0 36.0 36.0 36.0 7 35.04370347112079 36.0 36.0 36.0 36.0 36.0 8 34.97075842547411 36.0 36.0 36.0 36.0 36.0 9 35.146419410653166 36.0 36.0 36.0 36.0 36.0 10 34.96885932626562 36.0 36.0 36.0 36.0 36.0 11 35.151383914003624 36.0 36.0 36.0 36.0 36.0 12 35.04586675570868 36.0 36.0 36.0 36.0 36.0 13 35.10067881887792 36.0 36.0 36.0 36.0 36.0 14 35.061260652789265 36.0 36.0 36.0 36.0 36.0 15 35.002834894098186 36.0 36.0 36.0 36.0 36.0 16 35.026687940625166 36.0 36.0 36.0 36.0 36.0 17 35.0008504207994 36.0 36.0 36.0 36.0 36.0 18 35.01182858020991 36.0 36.0 36.0 36.0 36.0 19 34.995600862847475 36.0 36.0 36.0 36.0 36.0 20 34.99645982105591 36.0 36.0 36.0 36.0 36.0 21 34.99098165026219 36.0 36.0 36.0 36.0 36.0 22 34.970660245270274 36.0 36.0 36.0 36.0 36.0 23 34.923448373339 36.0 36.0 36.0 32.0 36.0 24 34.89814064717355 36.0 36.0 36.0 32.0 36.0 25 34.87730604903888 36.0 36.0 36.0 32.0 36.0 26 34.82286820896542 36.0 36.0 36.0 32.0 36.0 27 34.80438329551578 36.0 36.0 36.0 32.0 36.0 28 34.790578305115616 36.0 36.0 36.0 32.0 36.0 29 34.76802389336207 36.0 36.0 36.0 32.0 36.0 30 34.750060236163705 36.0 36.0 36.0 32.0 36.0 31 34.74648875338651 36.0 36.0 36.0 32.0 36.0 32 34.708377285179814 36.0 36.0 36.0 32.0 36.0 33 34.68762236952942 36.0 36.0 36.0 32.0 36.0 34 34.67744720086816 36.0 36.0 36.0 32.0 36.0 35 34.64353945800733 36.0 36.0 36.0 32.0 36.0 36 34.61352287646179 36.0 36.0 36.0 32.0 36.0 37 34.61114995105219 36.0 36.0 36.0 32.0 36.0 38 34.56997355300403 36.0 36.0 36.0 32.0 36.0 39 34.55420733002967 36.0 36.0 36.0 32.0 36.0 40 34.53528843162105 36.0 36.0 36.0 32.0 36.0 41 34.50751481714767 36.0 36.0 36.0 32.0 36.0 42 34.47613509596048 36.0 36.0 36.0 32.0 36.0 43 34.46391047483172 36.0 36.0 36.0 32.0 36.0 44 34.44290417991546 36.0 36.0 36.0 32.0 36.0 45 34.38531319010723 36.0 36.0 36.0 32.0 36.0 46 34.40499096931845 36.0 36.0 36.0 32.0 36.0 47 34.36583461710669 36.0 36.0 36.0 32.0 36.0 48 34.339686904752874 36.0 36.0 36.0 32.0 36.0 49 34.336076055034034 36.0 36.0 36.0 32.0 36.0 50 33.782068879816045 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 2.0 20 19.0 21 55.0 22 161.0 23 517.0 24 1356.0 25 3309.0 26 6996.0 27 13243.0 28 22091.0 29 34324.0 30 50005.0 31 73399.0 32 111256.0 33 184755.0 34 404129.0 35 1202749.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.21746419302489 18.379546108966675 11.95058535444553 26.4524043435629 2 16.050806835273367 20.727135951779136 36.79278887861731 26.429268334330185 3 18.20234258462166 24.49364551984841 28.944935743743343 28.35907615178658 4 12.272501332786938 16.31454530621847 36.59543608219454 34.817517278800054 5 14.2540106850417 36.836263878032675 33.849925629681344 15.059799807244275 6 33.80486909487426 35.9750877341098 16.932552757855753 13.287490413160189 7 29.75173214543192 30.69540042345549 21.24187997541226 18.310987455700335 8 27.782151882403834 33.23186464602005 19.64884688062046 19.33713659095566 9 27.191837478087315 14.43286940420268 18.672262147784448 39.70303096992555 10 15.327589870459047 27.19008256623132 32.266236254771464 25.216091308538168 11 37.0143162863409 21.36994111084972 22.447978720982295 19.16776388182708 12 24.028917152982782 24.069422415821144 29.22298194622571 22.678678484970366 13 29.30176325954482 19.802804823446383 25.464292761036024 25.431139155972772 14 23.206859523574632 19.766236254771464 25.544876416261296 31.482027805392608 15 25.032821594712118 27.27920363048576 22.596339917889097 25.091634856913025 16 25.591737305821376 26.03516084478611 23.91840513610527 24.454696713287245 17 23.838959802083888 26.017089995674382 25.657759935646908 24.486190266594825 18 24.622361940609988 25.144471932793515 26.39045935054981 23.842706776046686 19 25.14912007770939 25.717379508700567 25.552892094738677 23.58060831885136 20 25.1891984700963 24.71764891138549 25.598472372944382 24.49468024557383 21 26.096582759745928 24.757869593922884 24.66746791831407 24.47807972801712 22 25.04501111760376 25.097516183133116 25.148408626956964 24.709064072306163 23 24.17694633953845 24.703135316035908 25.56408558657692 25.555832757848723 24 24.289972149074547 25.630345366653263 25.304690642240825 24.774991842031373 25 24.661871172394953 24.835417725937788 25.53619671708165 24.966514384585615 26 24.199665333566056 25.368057189257282 25.837377535610486 24.59489994156618 27 25.09685216243085 25.3468085267847 25.048900381717043 24.507438929067412 28 24.275932854226586 24.942419919103305 25.894815326356692 24.886831900313418 29 24.270762978758924 25.408088151594026 25.792556138207374 24.528592731439673 30 24.67989459145652 25.17700894720466 25.84463433328527 24.298462128053547 31 24.599927526883352 25.170179019981333 25.178052408308226 25.05184104482709 32 24.254257321302543 25.300801378127534 25.34187580156785 25.10306549900207 33 24.145120775879732 24.944791421611406 25.60383196861269 25.30625583389617 34 24.48016665022425 25.171459631335708 26.065136636488507 24.28323708195154 35 25.41700500102449 24.964474892428644 25.382570784606862 24.235949321940005 36 24.364579617979405 25.32835823727167 25.43773193294529 24.869330211803632 37 25.28045388660803 25.172123652037975 25.112172068633182 24.435250392720814 38 24.321607992532613 25.068915862885415 25.650597998072445 24.958878146509527 39 24.632938841796122 25.128535435939074 25.211870034073748 25.026655688191056 40 24.995446715184446 25.09647272202955 25.58950809346376 24.318572469322245 41 24.045090800088033 25.408752172296296 25.946324360832644 24.59983266678303 42 25.182178822672324 25.456182222458317 25.384752566914315 23.976886387955044 43 24.395361720534556 24.720257564144397 25.72790897983654 25.15647173548451 44 24.34665105901816 25.015651916553466 25.680384069574192 24.95731295485418 45 24.389670114515113 25.29430346125534 25.664115562368618 24.651910861860927 46 24.26347025921009 25.05412957042109 25.70131291184125 24.98108725852757 47 24.435582403071948 24.857045828811668 26.02425193324884 24.683119834867536 48 24.737237522102404 25.785157050382097 25.171364771235382 24.306240656280117 49 24.01810310154584 25.34903773914231 25.812049888823964 24.820809270487885 50 23.852843316977847 25.912401315711463 25.317675070493014 24.917080296817677 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 46.0 1 46.0 2 46.0 3 185.0 4 324.0 5 350.5 6 377.0 7 339.5 8 302.0 9 407.0 10 512.0 11 763.5 12 1015.0 13 1788.0 14 2561.0 15 3336.5 16 4112.0 17 4776.5 18 5441.0 19 6124.5 20 6808.0 21 8422.5 22 10037.0 23 11043.5 24 12050.0 25 15174.5 26 18299.0 27 22692.5 28 27086.0 29 30632.5 30 34179.0 31 36591.5 32 39004.0 33 44027.0 34 49050.0 35 55769.0 36 62488.0 37 73833.5 38 85179.0 39 91243.0 40 97307.0 41 106610.5 42 115914.0 43 117893.0 44 119872.0 45 130819.5 46 141767.0 47 149329.5 48 156892.0 49 157737.0 50 158582.0 51 152585.5 52 146589.0 53 142812.5 54 139036.0 55 138799.5 56 138563.0 57 134652.0 58 130741.0 59 119169.0 60 107597.0 61 95042.0 62 82487.0 63 72195.5 64 61904.0 65 52769.0 66 43634.0 67 38768.5 68 33903.0 69 31126.5 70 28350.0 71 22083.0 72 15816.0 73 14031.0 74 12246.0 75 9082.0 76 5918.0 77 5281.5 78 4645.0 79 3963.0 80 3281.0 81 2586.0 82 1891.0 83 1569.5 84 1248.0 85 990.0 86 732.0 87 536.0 88 340.0 89 229.0 90 118.0 91 81.0 92 44.0 93 28.5 94 13.0 95 11.0 96 9.0 97 9.0 98 9.0 99 6.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015604486503304928 2 0.003272673461179452 3 6.165906521062736E-4 4 1.897202006480842E-4 5 0.0 6 4.2687045145818945E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 4.743005016202105E-5 47 0.0 48 0.0 49 0.0 50 1.4229015048606317E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2108368.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.06125675022588 #Duplication Level Percentage of deduplicated Percentage of total 1 81.3244417031666 48.03123731499498 2 11.893101922332791 14.048430923830038 3 3.151226435338471 5.583461807268734 4 1.1894158339975904 2.809935758180629 5 0.6225090463975393 1.8383083309311672 6 0.3526078811157268 1.2495278759237438 7 0.26594765589655633 1.0995041950919067 8 0.18003817038610703 0.8506624484811823 9 0.13515831007347331 0.7184357687858443 >10 0.7365118549099023 7.943534141906716 >50 0.0732198757673002 3.0312839657242296 >100 0.06638623536683273 8.359368986254578 >500 0.007419033530808846 2.8850174462032476 >1k 0.002016041720328483 1.5512910364229822 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.4229015048606317E-4 0.0 5 0.0 0.0 0.0 1.4229015048606317E-4 0.0 6 0.0 0.0 0.0 1.4229015048606317E-4 0.0 7 0.0 0.0 0.0 1.4229015048606317E-4 0.0 8 0.0 0.0 0.0 1.4229015048606317E-4 0.0 9 0.0 0.0 0.0 1.4229015048606317E-4 0.0 10 0.0 0.0 0.0 2.8458030097212633E-4 0.0 11 0.0 0.0 0.0 2.8458030097212633E-4 0.0 12 0.0 0.0 0.0 2.8458030097212633E-4 4.743005016202105E-5 13 0.0 0.0 0.0 2.8458030097212633E-4 4.743005016202105E-5 14 0.0 0.0 0.0 2.8458030097212633E-4 4.743005016202105E-5 15 0.0 0.0 0.0 2.8458030097212633E-4 4.743005016202105E-5 16 0.0 0.0 0.0 2.8458030097212633E-4 4.743005016202105E-5 17 0.0 0.0 0.0 3.794404012961684E-4 4.743005016202105E-5 18 0.0 0.0 0.0 6.165906521062737E-4 4.743005016202105E-5 19 0.0 0.0 0.0 7.114507524303157E-4 4.743005016202105E-5 20 0.0 0.0 0.0 9.011709530784E-4 4.743005016202105E-5 21 0.0 0.0 0.0 0.0011383212038885053 4.743005016202105E-5 22 0.0 0.0 0.0 0.001849771956318821 4.743005016202105E-5 23 0.0 0.0 0.0 0.0027035128592352 9.48601003240421E-5 24 0.0 0.0 0.0 0.004316134564743916 9.48601003240421E-5 25 0.0 0.0 0.0 0.005359595668308379 9.48601003240421E-5 26 0.0 0.0 0.0 0.006355626721710821 9.48601003240421E-5 27 0.0 0.0 0.0 0.008869419380297937 9.48601003240421E-5 28 0.0 0.0 0.0 0.012948403694231747 9.48601003240421E-5 29 0.0 0.0 0.0 0.0216281028738816 9.48601003240421E-5 30 0.0 0.0 0.0 0.03704286917653844 9.48601003240421E-5 31 0.0 0.0 0.0 0.0729948471993504 9.48601003240421E-5 32 0.0 0.0 0.0 0.11819568500375646 9.48601003240421E-5 33 0.0 0.0 0.0 0.16296965235670433 9.48601003240421E-5 34 0.0 0.0 0.0 0.21409924643136302 9.48601003240421E-5 35 0.0 0.0 0.0 0.26949754502060363 9.48601003240421E-5 36 0.0 0.0 0.0 0.353733314108353 9.48601003240421E-5 37 0.0 0.0 0.0 0.4744427917706966 9.48601003240421E-5 38 0.0 0.0 0.0 0.6361318327730263 9.48601003240421E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGCGA 115 8.780262E-9 21.0434 10 ATTAGCG 55 0.0044847964 19.999926 44 TATGCCG 55 0.0044847964 19.999926 5 CGCGAAC 90 1.0025722E-5 19.555481 12 TATACCG 100 2.4845152E-5 17.599934 5 TAGGACG 220 1.8189894E-12 16.999937 4 GGCGTTA 495 0.0 16.444382 42 ACGCGAA 110 5.6246077E-5 15.999941 11 ATCGTTT 520 0.0 15.653787 29 CGTTTAT 535 0.0 15.626109 31 CCACGCG 170 4.4952685E-8 15.529353 9 ATTGTCG 285 0.0 15.438538 43 CGACCAT 585 0.0 15.418745 10 TCTATAC 300 0.0 15.3999405 3 GTCTAAA 305 0.0 15.15 1 CGTCGTA 320 0.0 15.124944 10 ACCGTCC 160 3.827481E-7 15.124944 8 TACCGTC 335 0.0 15.104421 7 TCGACGC 175 6.416485E-8 15.085657 14 GTATTAG 675 0.0 14.995026 1 >>END_MODULE