FastQCFastQC Report
Thu 2 Feb 2017
SRR4062357_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062357_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1601
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA60.3747657713928795No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC60.3747657713928795No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.3747657713928795No Hit
GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA50.3123048094940662No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCGCCAGAATCGGGGTTGGC40.24984384759525297No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA40.24984384759525297No Hit
AATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGT30.18738288569643974No Hit
ACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAA30.18738288569643974No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA30.18738288569643974No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG30.18738288569643974No Hit
GATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTAC30.18738288569643974No Hit
CCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGC30.18738288569643974No Hit
AAAGCGCCTGGTGCAGAGCCCCAATTCCTACTTTATGGACGTGAAATGCC30.18738288569643974No Hit
ATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAA30.18738288569643974No Hit
TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA30.18738288569643974No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA30.18738288569643974No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA30.18738288569643974No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC30.18738288569643974No Hit
GACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGT30.18738288569643974No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC30.18738288569643974No Hit
AGCCTAAACGATGATGTTTTCTCCAACGACACCGGGGTCAGGATAATCGT20.12492192379762648No Hit
ACCTAATGGCCCAAAAACTATAGTATAAGTTTGAAATTTCGGTTGGGGTG20.12492192379762648No Hit
GTGATAGCTAGTTTTTGATCTAAAACTCCCTTAGACCTGTCTCTTATACA20.12492192379762648No Hit
CAAAACATGTGCTCTGTTCCTGAGCTGTACACTTGCTGTCTCTTATACAC20.12492192379762648No Hit
CCTTTAGCTTCCGAGAGAGGCATTCCATGCACATGATGTCCTGTAGTGGC20.12492192379762648No Hit
GTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGC20.12492192379762648No Hit
AATCTACCCCGTGAAGTACACACAGACCTTCAGGCTTCACGATAACCCTG20.12492192379762648No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACA20.12492192379762648No Hit
TCCCGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTGAGC20.12492192379762648No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA20.12492192379762648No Hit
GTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCG20.12492192379762648No Hit
ATTTGACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG20.12492192379762648No Hit
GTGTAGGTGGGCAGGCACCAGGGCGTGGACGTTGGCTTGGGCGTCAGCAT20.12492192379762648No Hit
ACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGG20.12492192379762648No Hit
CTCCAACACCGCCCACCTTCCATTTCTAATGCGAAGGAGGTGGAAGAGGC20.12492192379762648No Hit
TGACTCCATTTTTCAGATTGTGATAGTAAAATGTGGGTCCATAAGAGTTG20.12492192379762648No Hit
GTTGGGGGACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAG20.12492192379762648No Hit
GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA20.12492192379762648No Hit
CTCCGATTAGGCAAGTGAACACCATTGACAAGAGGCAGGAGTGGAGGGTG20.12492192379762648No Hit
CTGTGGGGCGTCTGCATTTCTCTTCAAGGGCAGGAGGAGCTTTTCTGACT20.12492192379762648No Hit
GCGTTGATACCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATCTGT20.12492192379762648No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA20.12492192379762648No Hit
CTGGAGACCACAGGGGCCTGCGGGCAGGAGGTGGAGGAGGGGCAGACAGG20.12492192379762648No Hit
TCAACGCAGAGTACATGGGCAGGCCCGAGCCGCCTGGATACCGCAGCTAG20.12492192379762648No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG20.12492192379762648No Hit
ATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGC20.12492192379762648No Hit
GCGTCTAACCAAGGAAAATGTGAAGCCTTCAGGAAGACAAATTGGCAAGC20.12492192379762648No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG20.12492192379762648No Hit
CAAGCACCCAATACTCCGCCAGAAGCCGTCGTCATCTCGACAGCCCCTGT20.12492192379762648No Hit
GTTCAACATTCCAGAAACTCTGTCTCCCAAGGCCAAGTGCCTCATCCGAA20.12492192379762648No Hit
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG20.12492192379762648No Hit
GAAGGGGTAGCACCCTAGGGTGTCTGGAGCCGTGGGGCTGATGTGACGAA20.12492192379762648No Hit
ACGCCAGCCGCAACGGGCACTATGCTGTTTGCCAGTTTCTGCTGGAAAGT20.12492192379762648No Hit
AGCCTGCAGTGCCTGTCCTGCCTGCCTCTGCCTGCTCTTTATCATCTCCC20.12492192379762648No Hit
ATCAACGCAGAGTACATGGGAGCGAACCCGGGGAACTGAAACATCTAAGT20.12492192379762648No Hit
GTCCTGAGAATGCTGACTGAAGAGCCACTGAAGGCTGACGCAGGCAAAGC20.12492192379762648No Hit
GCGTTGATACCACCCATGTACTCTGCGTTGATACCTGTCTCTTATACACA20.12492192379762648No Hit
CTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGT20.12492192379762648No Hit
GGTCTGAAGAACTCCCTGGGAGATGGAAACCCTCATCCCACTATTGACTC20.12492192379762648No Hit
TTTCTCACTTTGAAGATGTAAAGATTAAAGAGAAGTGAATAAGCTTTTGA20.12492192379762648No Hit
CAAATGCTATTCAGAATGAAGAAAAGCTGTATAAAGATGCAGCCAAAAGG20.12492192379762648No Hit
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG20.12492192379762648No Hit
ACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCATTAATAGC20.12492192379762648No Hit
GAGCCCTAATGGCTGCCTACCAATCTCGGGAGGCACCTTTCTGAGCCTCT20.12492192379762648No Hit
GGCCAAAGTCTGCAATCTTGCAGCTCAGCGTGTCAGACACCAGGATGTTG20.12492192379762648No Hit
AATGTGCTGCATGTGGATGCCATGTTTTCTCATGCAGTTCTGCCCTCGAT20.12492192379762648No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCCTGTCTCTTA20.12492192379762648No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTT20.12492192379762648No Hit
GCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGT20.12492192379762648No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG20.12492192379762648No Hit
GAAGAGAGTTGAAAAAGATGTAAACAAAGCAAAGAGACAGATAAAGAAGC20.12492192379762648No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.12492192379762648No Hit
CTCTCGACGACCCTTGAAAATCCGCCGGAAGGAATGATTTTCACGCGAGG20.12492192379762648No Hit
AAGCAATATACCGAAGCTGCGGATGCACGTAAGTGCATGGTAGGAGAGCG20.12492192379762648No Hit
GTAATGCTAGAGGTGATGTTTTTGGTAAACAGGCGGGGTTCTTGCTGTCT20.12492192379762648No Hit
GGATACCGCGGCCGTTAAACTTTAGTCACTGGGCAGGCAGTGCCTCTACT20.12492192379762648No Hit
ACGCAGAGTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA20.12492192379762648No Hit
ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCTGTCT20.12492192379762648No Hit
CGGTGGGACTGGGCAACCGGTTAGGCTGGAGGGATAAGACCGCTTGGCTG20.12492192379762648No Hit
ATCCCAAGCAGAAGATCGCCGCTACCTGGAGCTGTCTCTTATACACATCT20.12492192379762648No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTCTGTCTCTTATACACATC20.12492192379762648No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG20.12492192379762648No Hit
CTATTTTGTCCTTGCTTACCTTTCTACCCACCTACACCACCTACCCTAGA20.12492192379762648No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC20.12492192379762648No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG20.12492192379762648No Hit
TGCGTGCATTTATCAGATCAAAACCAACCCGGTGAGCTCCCTCCCGGCTC20.12492192379762648No Hit
GCTGGGAACTCATTCACGTATATTTGCTTAATCAACTTTTGCTAGGAATC20.12492192379762648No Hit
CAATCTTGGTGGTGTAGTTTGTAGCACCAAAAATAAGCTCTGGAGCTGTC20.12492192379762648No Hit
TCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTA20.12492192379762648No Hit
ATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA20.12492192379762648No Hit
TTGTAGATCAGGTGGCCGGTTGTGGTGGACTTGCCGGAATCTACGTGTCC20.12492192379762648No Hit
ACATGGGAAGCAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA20.12492192379762648No Hit
ACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAA20.12492192379762648No Hit
ATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATA20.12492192379762648No Hit
TCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAAC20.12492192379762648No Hit
GCCCACTTGGGCACAGCCCTGAAGGCCAATCCGTTTGAGGGTGTCTCTCA20.12492192379762648No Hit
ACTCAATCTGGTCACTACCTGGTTGCAGCTACAGATACCTCGGATAGAGG20.12492192379762648No Hit
TGCAAAGACCCTGCCCACCACCAGAACTGTTATTTTTACTCCAAGCCCAG20.12492192379762648No Hit
CCGCAGCTAGGAATAATAAAATAGGACCGCGGTTCTATTTTGTTGGTTTT20.12492192379762648No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.12492192379762648No Hit
TGGCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTT20.12492192379762648No Hit
GCCGAAGGACCTGTCGGCTTGTTGACAAAACCCTCCCTGACAAGCTGCTG20.12492192379762648No Hit
CCGGGAATATGACCAGTACAGCCATCTCCAAGGAAACCAACTGAGGAAGA20.12492192379762648No Hit
CGGCTCCTCTGTCACATTCAGCCGCTCGTCGGAGTACAGGATGCTAGCTG20.12492192379762648No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG20.12492192379762648No Hit
GTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAA20.12492192379762648No Hit
TCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAG20.12492192379762648No Hit
GTTCTGCACTACAGGCATGGATGGCGGCATGAGCATCTGGGACGTGAAGA20.12492192379762648No Hit
ACCCCGGGCGGACGCCCTTGGCAGGCTTCGGCCGTCCGGCGCGCGCTTAA20.12492192379762648No Hit
ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC20.12492192379762648No Hit
ACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.12492192379762648No Hit
GCCTGAGGCTCATCTCTAGAGTTTGTACGTGCCTGCCCAGACAAACTGTT20.12492192379762648No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC20.12492192379762648No Hit
CACTTGGGGCCGACTTGTTAAGGCTCTGCAGCATCAGACTGTAGAGGGGA20.12492192379762648No Hit
GATAAACAACTTCCTCAAGGTCACATGGCTAGTAATTAACAAAACCCAAA20.12492192379762648No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCTGTCTCTTA20.12492192379762648No Hit
CACAAGGGGGGTCTTCAGGCCCAGCACATGATGAGAGGACTAATGGGCTG20.12492192379762648No Hit
GCACAAGCCCACGCAGGCAGTGCCCTACCGCGCGCCCAAAGTGGGTCGCC20.12492192379762648No Hit
GTTTAAGGTGTGAAACAGCTGTATTAGACACAAAGTTACAAGATATAGTC20.12492192379762648No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA20.12492192379762648No Hit
CCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCA20.12492192379762648No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)