##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062356_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2822203 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33201155267711 32.0 32.0 32.0 32.0 32.0 2 31.53239047651781 32.0 32.0 32.0 32.0 32.0 3 31.594866138261494 32.0 32.0 32.0 32.0 32.0 4 31.669588261368865 32.0 32.0 32.0 32.0 32.0 5 31.645936525473186 32.0 32.0 32.0 32.0 32.0 6 35.270081918274485 36.0 36.0 36.0 36.0 36.0 7 35.29227344737427 36.0 36.0 36.0 36.0 36.0 8 35.22910152104579 36.0 36.0 36.0 36.0 36.0 9 35.33814647635199 36.0 36.0 36.0 36.0 36.0 10 35.26216505332891 36.0 36.0 36.0 36.0 36.0 11 35.34060342222016 36.0 36.0 36.0 36.0 36.0 12 35.2918542712909 36.0 36.0 36.0 36.0 36.0 13 35.30653641853545 36.0 36.0 36.0 36.0 36.0 14 35.2798473391177 36.0 36.0 36.0 36.0 36.0 15 35.23846725412736 36.0 36.0 36.0 36.0 36.0 16 35.26964821453311 36.0 36.0 36.0 36.0 36.0 17 35.27157933004819 36.0 36.0 36.0 36.0 36.0 18 35.27292863057689 36.0 36.0 36.0 36.0 36.0 19 35.22497637483909 36.0 36.0 36.0 36.0 36.0 20 35.20346729133234 36.0 36.0 36.0 36.0 36.0 21 35.16583463344061 36.0 36.0 36.0 36.0 36.0 22 35.13076309535494 36.0 36.0 36.0 36.0 36.0 23 35.11164894942001 36.0 36.0 36.0 36.0 36.0 24 35.09535742113519 36.0 36.0 36.0 36.0 36.0 25 35.035272090632745 36.0 36.0 36.0 36.0 36.0 26 35.00792111694304 36.0 36.0 36.0 36.0 36.0 27 34.93700098823508 36.0 36.0 36.0 36.0 36.0 28 34.870135139109415 36.0 36.0 36.0 36.0 36.0 29 34.8334531569841 36.0 36.0 36.0 36.0 36.0 30 34.772179393190356 36.0 36.0 36.0 32.0 36.0 31 34.766864396359864 36.0 36.0 36.0 32.0 36.0 32 34.72522954585478 36.0 36.0 36.0 32.0 36.0 33 34.76411902333036 36.0 36.0 36.0 36.0 36.0 34 34.72173723860403 36.0 36.0 36.0 32.0 36.0 35 34.697191520241454 36.0 36.0 36.0 32.0 36.0 36 34.61221322491685 36.0 36.0 36.0 32.0 36.0 37 34.50745534605413 36.0 36.0 36.0 32.0 36.0 38 34.46163830170969 36.0 36.0 36.0 32.0 36.0 39 34.22277100548756 36.0 36.0 36.0 32.0 36.0 40 34.304531601730986 36.0 36.0 36.0 32.0 36.0 41 34.2833708276832 36.0 36.0 36.0 32.0 36.0 42 34.25481795604356 36.0 36.0 36.0 32.0 36.0 43 34.26210658836377 36.0 36.0 36.0 32.0 36.0 44 34.157194220259846 36.0 36.0 36.0 32.0 36.0 45 34.10286007066111 36.0 36.0 36.0 32.0 36.0 46 33.99471937348235 36.0 36.0 36.0 32.0 36.0 47 33.997572463780955 36.0 36.0 36.0 32.0 36.0 48 33.97158212927986 36.0 36.0 36.0 32.0 36.0 49 33.915650645967 36.0 36.0 36.0 32.0 36.0 50 33.52175941985747 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 4.0 20 20.0 21 55.0 22 192.0 23 718.0 24 2069.0 25 4806.0 26 10594.0 27 20748.0 28 33892.0 29 49827.0 30 69196.0 31 95158.0 32 138451.0 33 211326.0 34 448110.0 35 1737036.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.31149501176049 21.30375722471655 13.327996195251366 26.0567515682716 2 10.862626148089353 21.275300487583625 48.12439760743848 19.737675756888535 3 18.112928892279488 27.549418304907935 30.659953659985906 23.67769914282667 4 10.329115933437674 18.32940790455096 40.47658614901795 30.864890012993424 5 9.774070034675052 41.31805590103047 36.91457946667177 11.993294597622707 6 29.312463503546184 39.43076870744442 19.417743371110117 11.839024417899278 7 25.968365847531167 32.28981047784302 23.971946738062428 17.769876936563385 8 21.993456884568545 44.51161025624308 20.265232515166343 13.229700344022028 9 26.32386826886656 15.360553439989966 21.816502923425425 36.499075367718056 10 15.28773798341225 30.086744291604823 35.48228104073307 19.143236684249857 11 32.70629362948023 20.08349505687578 30.240808333064628 16.969402980579357 12 26.01588191919575 23.655810726584868 34.634574479582085 15.693732874637295 13 30.619094374146723 23.897536782435566 26.516731787188945 18.96663705622877 14 18.381030705445355 26.544688670517324 27.43959240352306 27.63468822051426 15 19.335249803079368 41.07826403699521 22.3269197857135 17.259566374211918 16 17.76796353770441 27.983139412721197 35.734389057059325 18.514507992515068 17 18.04207564090889 33.1211468487561 31.367410494567544 17.46936701576747 18 18.71520227283438 26.593763807918847 39.04892738048964 15.642106538757133 19 24.335882287702194 26.15293797079799 27.744992121403033 21.766187620096783 20 23.936477992546955 29.0456781457606 30.745910198522218 16.271933663170227 21 20.397115303186908 27.36982421179483 26.71041027169201 25.522650213326255 22 22.692449834402414 33.73995421307397 27.162503902093505 16.405092050430106 23 17.157624735003115 33.29802994327481 30.770182017381458 18.774163304340615 24 23.435132058182916 27.98618667757068 31.522112335647012 17.056568928599393 25 20.308496589366534 30.598861952878654 31.213807086166373 17.878834371588436 26 15.819840032768727 32.75490813382312 32.84140084891129 18.583850984496863 27 18.429361743290613 32.223408450774095 30.445435711038506 18.901794094896786 28 16.918237277757836 32.55648158548482 28.279220169491705 22.24606096726564 29 20.07360916277107 29.253494521832767 27.77794510175207 22.894951213644095 30 17.532473744801493 29.49086228028246 31.30015806800574 21.67650590691031 31 22.599685423054257 27.01963678728993 29.757427087987647 20.623250701668162 32 18.797655590331384 31.74622803533268 30.073102466406564 19.38301390792937 33 16.59986896761147 32.32832648820797 33.521436976716416 17.55036756746414 34 18.89194363410428 31.616046046297875 32.85564504041701 16.63636527918084 35 18.050367035964456 32.62773797632559 31.629971337993755 17.691923649716195 36 16.581337345329164 30.94469107998255 33.732194317701456 18.74177725698683 37 17.898110093427015 30.90688373586167 28.29282656137776 22.902179609333558 38 19.228808133220753 34.07416121377519 27.840343164542027 18.85668748846203 39 22.525665233861634 28.05322650425926 29.537669685702976 19.88343857617613 40 24.084022304561366 27.834000601657642 31.110448114469442 16.97152897931155 41 22.69305220070987 26.109709329910004 33.13578080669605 18.06145766268408 42 20.524250027372233 32.32797215508594 31.330666149812753 15.817111667729074 43 16.960615519152945 32.58691880066742 32.118561279964624 18.333904400215008 44 16.556321426913655 32.15782138988585 30.998797747716942 20.287059435483556 45 17.235329988664883 32.83973548323774 30.04741331505919 19.877521213038182 46 18.49253011570056 27.772882068202843 31.63557920614386 22.099008609952737 47 23.12913816941523 27.880817886175407 30.15957043471729 18.830473509692077 48 17.4274139741188 30.80490666334066 29.38424344386283 22.383435918677712 49 21.083635727125227 28.324007876116635 30.085256092492287 20.50710030426585 50 17.356034299482673 34.694777124229326 27.796364538303454 20.15282403798455 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 9.0 1 16.0 2 23.0 3 87.0 4 151.0 5 179.0 6 207.0 7 234.5 8 262.0 9 408.0 10 554.0 11 803.0 12 1052.0 13 1906.0 14 2760.0 15 3848.5 16 4937.0 17 6010.5 18 7084.0 19 8222.0 20 9360.0 21 11243.0 22 13126.0 23 16454.0 24 19782.0 25 26538.0 26 33294.0 27 50802.0 28 68310.0 29 93626.0 30 118942.0 31 153898.0 32 188854.0 33 242489.5 34 296125.0 35 350158.0 36 404191.0 37 393453.5 38 382716.0 39 335068.5 40 287421.0 41 245048.5 42 202676.0 43 174070.5 44 145465.0 45 135636.5 46 125808.0 47 120653.0 48 115498.0 49 103463.0 50 91428.0 51 76365.0 52 61302.0 53 53273.5 54 45245.0 55 44176.5 56 43108.0 57 40507.5 58 37907.0 59 33338.5 60 28770.0 61 24753.0 62 20736.0 63 18080.5 64 15425.0 65 13479.5 66 11534.0 67 10718.0 68 9902.0 69 10181.5 70 10461.0 71 8078.5 72 5696.0 73 5228.0 74 4760.0 75 3300.0 76 1840.0 77 1841.0 78 1842.0 79 1608.0 80 1374.0 81 1099.5 82 825.0 83 732.5 84 640.0 85 560.5 86 481.0 87 357.5 88 234.0 89 144.5 90 55.0 91 34.0 92 13.0 93 9.0 94 5.0 95 6.0 96 7.0 97 6.0 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.016511923486722962 2 0.004358297401001983 3 7.086662440653631E-4 4 2.1259987321960895E-4 5 3.543331220326816E-5 6 3.897664342359497E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.4173324881307264E-4 47 3.543331220326816E-5 48 0.0 49 0.0 50 1.0629993660980448E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2822203.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.48578908450246 #Duplication Level Percentage of deduplicated Percentage of total 1 81.76713696207499 44.551469785592424 2 11.487173727964748 12.517754498378503 3 2.9106914744035604 4.757739652932356 4 1.1726515313865735 2.5557137603499065 5 0.6171483270709122 1.681290679131963 6 0.3784511184661684 1.2372124691725022 7 0.24539811391759386 0.935949691365411 8 0.18887061683369025 0.823261167444826 9 0.1456112658612316 0.714037024803823 >10 0.8998340237927471 9.444441399886848 >50 0.09816107954472009 3.7370372426436997 >100 0.07703498207913047 8.329687357433418 >500 0.007651397031321957 2.8558198687105256 >1k 0.0037930002377325007 3.933148232854439 >5k 2.615862232918966E-4 1.1135303028993058 >10k+ 1.307931116459483E-4 0.8119068663999097 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 12288 0.43540454035375914 No Hit GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA 10498 0.37197891150990914 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 9852 0.3490889918265979 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 9732 0.3448369943622057 No Hit CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA 6398 0.22670233147650967 No Hit ATTTAGAAATGTCCACTGTAGGACGTGGAATATGGCAAGAAAACTGAAAA 5269 0.18669812199901992 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 4153 0.14715454558017266 No Hit TTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCT 3987 0.14127261575443015 No Hit GTCCTTCAGTGTGCATTTCTCATTTTTCACGTTTTTTAGTGATTTCGTCA 3983 0.14113088250561706 No Hit CTGTAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA 3688 0.13067805540565297 No Hit GTCCTACAGTGTGCATTTCTCATTTTTCACGTTTTTCAGTGATTTCGTCA 3663 0.12979222260057127 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 3589 0.1271701574975294 No Hit GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG 2904 0.10289833863829073 No Hit GGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTT 2824 0.10006367366202928 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 3.543331220326816E-5 0.0 6 0.0 0.0 0.0 3.543331220326816E-5 0.0 7 0.0 0.0 0.0 7.086662440653632E-5 0.0 8 0.0 0.0 0.0 7.086662440653632E-5 0.0 9 0.0 0.0 0.0 7.086662440653632E-5 0.0 10 0.0 0.0 0.0 7.086662440653632E-5 0.0 11 0.0 0.0 0.0 7.086662440653632E-5 0.0 12 0.0 0.0 0.0 7.086662440653632E-5 0.0 13 0.0 0.0 0.0 7.086662440653632E-5 0.0 14 0.0 0.0 0.0 1.4173324881307264E-4 0.0 15 0.0 0.0 0.0 1.7716656101634078E-4 0.0 16 0.0 0.0 0.0 1.7716656101634078E-4 0.0 17 0.0 0.0 0.0 2.1259987321960893E-4 0.0 18 0.0 0.0 0.0 2.834664976261453E-4 0.0 19 0.0 0.0 0.0 4.6063305864248606E-4 0.0 20 0.0 0.0 0.0 6.732329318620949E-4 0.0 21 0.0 0.0 0.0 0.0010984326783013128 0.0 22 0.0 0.0 0.0 0.0015236324247405307 0.0 23 0.0 0.0 0.0 0.0023740319176189665 0.0 24 0.0 0.0 0.0 0.0037204977813431565 0.0 25 0.0 0.0 0.0 0.004535463962018324 0.0 26 0.0 0.0 0.0 0.0058464965135392455 0.0 27 0.0 0.0 0.0 0.0075827288114993854 0.0 28 0.0 0.0 0.0 0.011728426339281759 0.0 29 0.0 0.0 0.0 0.01690168992095891 0.0 30 0.0 0.0 0.0 0.027602550206345895 0.0 31 0.0 0.0 0.0 0.059173631379457824 0.0 32 0.0 0.0 0.0 0.10257943882846131 0.0 33 0.0 0.0 0.0 0.144426180540521 0.0 34 0.0 0.0 0.0 0.1927217850735755 0.0 35 0.0 0.0 0.0 0.2452339537588189 0.0 36 0.0 0.0 0.0 0.3215927415568618 0.0 37 0.0 0.0 0.0 0.4459991007025363 0.0 38 0.0 0.0 0.0 0.5962717777565966 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCCGCT 30 0.0057464666 29.333157 33 GGACGCG 40 7.034723E-4 27.499834 6 TAGGACC 5550 0.0 25.607054 4 TCGGACG 45 0.0013987251 24.444296 4 ACCGTCG 240 0.0 22.916529 8 TACCGTC 245 0.0 22.448845 7 GACCGTT 60 2.8742116E-4 21.999866 7 AGGACCT 10310 0.0 21.402391 5 CCGTCGT 260 0.0 21.153719 9 TGTAGGA 15420 0.0 21.001913 2 GGACCTG 10360 0.0 20.959333 6 ATACCGT 255 0.0 20.705757 6 CTGTAGG 15185 0.0 20.693478 1 AACCGGA 75 5.476208E-5 20.533209 42 TGAGCGG 65 4.934606E-4 20.30757 29 GACGTGT 175 0.0 20.114162 7 TTAGGAC 10135 0.0 20.100521 3 GTAGGAC 15765 0.0 20.011297 3 AGGACGC 55 0.0044852262 19.999878 5 CGCGAGA 55 0.0044852262 19.999878 19 >>END_MODULE