##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062346_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7071869 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.343205452476568 32.0 32.0 32.0 32.0 32.0 2 31.436078920579554 32.0 32.0 32.0 32.0 32.0 3 31.510672638308204 32.0 32.0 32.0 32.0 32.0 4 31.608378350899883 32.0 32.0 32.0 32.0 32.0 5 31.537853571665426 32.0 32.0 32.0 32.0 32.0 6 35.146784251801044 36.0 36.0 36.0 36.0 36.0 7 35.16234265651697 36.0 36.0 36.0 36.0 36.0 8 35.101368393560456 36.0 36.0 36.0 36.0 36.0 9 35.2380810504267 36.0 36.0 36.0 36.0 36.0 10 35.110436717648476 36.0 36.0 36.0 36.0 36.0 11 35.24286846942442 36.0 36.0 36.0 36.0 36.0 12 35.15556396760177 36.0 36.0 36.0 36.0 36.0 13 35.19909305446693 36.0 36.0 36.0 36.0 36.0 14 35.16211216582207 36.0 36.0 36.0 36.0 36.0 15 35.11608289124134 36.0 36.0 36.0 36.0 36.0 16 35.13458266831583 36.0 36.0 36.0 36.0 36.0 17 35.10580965229984 36.0 36.0 36.0 36.0 36.0 18 35.12015225395154 36.0 36.0 36.0 36.0 36.0 19 35.1105485692679 36.0 36.0 36.0 36.0 36.0 20 35.10697850879308 36.0 36.0 36.0 36.0 36.0 21 35.10715611389295 36.0 36.0 36.0 36.0 36.0 22 35.08562630331529 36.0 36.0 36.0 36.0 36.0 23 35.04650962850132 36.0 36.0 36.0 36.0 36.0 24 35.02327758050948 36.0 36.0 36.0 36.0 36.0 25 35.00006773315513 36.0 36.0 36.0 36.0 36.0 26 34.953002664500715 36.0 36.0 36.0 32.0 36.0 27 34.93609440446366 36.0 36.0 36.0 32.0 36.0 28 34.920944095542495 36.0 36.0 36.0 32.0 36.0 29 34.90212742911386 36.0 36.0 36.0 32.0 36.0 30 34.88843006000253 36.0 36.0 36.0 32.0 36.0 31 34.89210589166739 36.0 36.0 36.0 32.0 36.0 32 34.863096870148475 36.0 36.0 36.0 32.0 36.0 33 34.8532472815885 36.0 36.0 36.0 32.0 36.0 34 34.84621420447692 36.0 36.0 36.0 32.0 36.0 35 34.828845528671415 36.0 36.0 36.0 32.0 36.0 36 34.80139564236838 36.0 36.0 36.0 32.0 36.0 37 34.79354495961393 36.0 36.0 36.0 32.0 36.0 38 34.7669401115886 36.0 36.0 36.0 32.0 36.0 39 34.76393185450692 36.0 36.0 36.0 32.0 36.0 40 34.7700774717405 36.0 36.0 36.0 32.0 36.0 41 34.73871603108033 36.0 36.0 36.0 32.0 36.0 42 34.72828880172978 36.0 36.0 36.0 32.0 36.0 43 34.71974537424265 36.0 36.0 36.0 32.0 36.0 44 34.69338982382168 36.0 36.0 36.0 32.0 36.0 45 34.67022480195829 36.0 36.0 36.0 32.0 36.0 46 34.669487090329305 36.0 36.0 36.0 32.0 36.0 47 34.655228342040836 36.0 36.0 36.0 32.0 36.0 48 34.623839327340484 36.0 36.0 36.0 32.0 36.0 49 34.61624472964643 36.0 36.0 36.0 32.0 36.0 50 34.12120346120665 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 10.0 20 45.0 21 176.0 22 612.0 23 1558.0 24 4107.0 25 9692.0 26 19504.0 27 36711.0 28 61337.0 29 95282.0 30 141446.0 31 206648.0 32 311071.0 33 529478.0 34 1216167.0 35 4438024.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.49660783711961 17.780152205365514 11.925450202313488 26.797789755201386 2 16.6211533775923 19.91693206068646 36.45940408348312 27.00251047823811 3 18.667146692881452 23.183442036834563 28.39204698751498 29.757364282769 4 12.88119755798264 15.893051019972404 35.15541460249909 36.070336819545865 5 15.08430091111699 35.85725357751961 32.903677938604346 16.154767572759056 6 34.97580753838716 34.39065498030142 16.718470789248215 13.915066692063203 7 31.177679105107604 29.754278467058278 20.27829426090734 18.78974816692678 8 28.39651418833044 32.59886920966285 19.093144838110664 19.911471763896046 9 27.285361196594565 14.76768022710828 18.554246409258994 39.39271216703816 10 16.572761740920257 26.176220176024188 30.668427257348803 26.582590825706752 11 37.403577470114335 20.69704628295575 22.40693372572371 19.492442521206204 12 25.489456888978008 22.97737698478295 28.028729038957028 23.504437087282017 13 29.446204390946722 19.143454156178517 25.135985974853327 26.274355478021437 14 23.778947262739173 19.73455673457752 24.357676874387803 32.128819128295504 15 25.497361447164817 27.33137449237252 21.453607243007472 25.717656817455186 16 26.34989420759915 25.331987908712676 23.339558467499895 24.978559416188283 17 24.59372479891808 25.660755310936896 24.65642392414226 25.089095966002763 18 25.402846121725386 24.4218466150886 25.732815469291076 24.442491793894938 19 26.113224099598 24.470900125553797 24.64569125926965 24.770184515578556 20 26.055120647738246 24.314279577294208 24.275732483166756 25.354867291800797 21 26.815626816616657 23.92812989041511 23.974864353397948 25.28137893957029 22 26.158332401236507 24.28104932373606 24.285560153899908 25.275058121127525 23 24.737222932155557 24.07954672237283 24.900093596190768 26.28313674928085 24 25.34987568350036 24.575582494528675 24.595633770930995 25.478908051039973 25 25.363676844127063 24.157758012768618 24.84456372141509 25.634001421689227 26 25.112880343230337 24.89158099506651 25.0712647533488 24.924273908354355 27 25.68534569856993 24.56195102030312 24.263585764951245 25.489117516175707 28 25.01389660922735 24.460591676684057 24.821344965524673 25.70416674856392 29 25.111692538422304 24.47972381841349 24.614143729189554 25.79443991397465 30 24.869649027718133 24.642806590450135 25.119201161673104 25.36834322015863 31 25.71948094626753 24.21997635985621 24.18329581614139 25.877246877734866 32 25.255176531126356 24.52437962298227 24.212665704073423 26.007778141817955 33 24.925984912899263 24.213033357942574 24.894592928686887 25.966388800471275 34 25.596924943038395 24.239108501585648 25.064505578369733 25.09946097700622 35 25.985605785401283 24.21731793957156 24.877101088835214 24.91997518619194 36 25.006430407576836 24.551529447165947 24.64060066723521 25.801439478022004 37 25.921379482566774 24.35361854129368 24.25269755421092 25.472304421928634 38 25.22951146295272 24.34741084711835 24.67885081016065 25.744226879768277 39 25.74340672882939 24.127058914694263 24.23827421011334 25.891260146363003 40 26.001824977244347 24.185727987891177 24.854094440946234 24.958352593918242 41 25.114379239773815 24.23756718344189 25.398208026760678 25.24984555002362 42 26.023177182722137 24.68536959607142 24.638366462953428 24.653086758253014 43 25.07870267393245 23.918726435684825 25.02675035411431 25.97582053626842 44 24.799427138709724 24.38014618200648 24.826661806093973 25.993764873189818 45 24.843319354473337 24.54653783886551 24.976735287375938 25.63340751928521 46 25.026350925032716 24.024846087124487 25.090054127218053 25.858748860624747 47 25.309136981545887 24.073564752720817 25.183710379086705 25.433587886646592 48 25.64487549189613 24.579145908952782 24.41015239394282 25.36582620520827 49 24.92785146331189 24.46590851725336 24.7485070778319 25.85773294160285 50 24.7020659045293 24.881990128206617 24.740160517747366 25.67578344951672 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 39.0 1 57.5 2 76.0 3 235.0 4 394.0 5 448.0 6 502.0 7 483.0 8 464.0 9 633.0 10 802.0 11 1183.5 12 1565.0 13 2800.0 14 4035.0 15 5118.0 16 6201.0 17 6860.5 18 7520.0 19 7997.5 20 8475.0 21 10723.0 22 12971.0 23 15102.5 24 17234.0 25 24687.0 26 32140.0 27 43994.5 28 55849.0 29 68247.5 30 80646.0 31 92618.5 32 104591.0 33 125646.0 34 146701.0 35 174405.5 36 202110.0 37 236383.0 38 270656.0 39 287726.5 40 304797.0 41 327526.0 42 350255.0 43 355914.5 44 361574.0 45 396860.5 46 432147.0 47 462689.0 48 493231.0 49 512856.5 50 532482.0 51 523577.0 52 514672.0 53 514757.0 54 514842.0 55 521688.0 56 528534.0 57 516848.0 58 505162.0 59 466044.0 60 426926.0 61 378703.5 62 330481.0 63 291223.0 64 251965.0 65 214924.0 66 177883.0 67 153016.0 68 128149.0 69 115202.0 70 102255.0 71 79090.5 72 55926.0 73 49438.5 74 42951.0 75 31178.5 76 19406.0 77 17689.5 78 15973.0 79 14055.0 80 12137.0 81 9595.5 82 7054.0 83 5946.0 84 4838.0 85 4022.0 86 3206.0 87 2318.0 88 1430.0 89 901.5 90 373.0 91 244.0 92 115.0 93 87.5 94 60.0 95 47.5 96 35.0 97 30.5 98 26.0 99 19.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.016388878244209558 2 0.004355284296131617 3 4.666376031569589E-4 4 1.555458677189863E-4 5 0.0 6 5.373402703019527E-4 7 2.8281066857997514E-5 8 1.4140533428998757E-5 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.555458677189863E-4 47 5.656213371599503E-5 48 0.0 49 0.0 50 4.242160028699627E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 7071869.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.52956610598734 #Duplication Level Percentage of deduplicated Percentage of total 1 79.2577648390169 36.87829408489836 2 11.529752736103605 10.72948784240442 3 3.4478659655756703 4.812831221095111 4 1.5672462131402787 2.9169314511467563 5 0.9019246906746788 2.098308225868483 6 0.594269853235394 1.6590671052547 7 0.3970612278544724 1.2932560654705423 8 0.29894690813956043 1.1127895939568164 9 0.2328491913579905 0.9750934657815584 >10 1.53430623658669 13.713826098565141 >50 0.1365901900406254 4.362800582750581 >100 0.08124730470889581 7.3639019669412535 >500 0.010835186782204504 3.5450296377680353 >1k 0.008942682475463147 7.48613469171555 >5k 3.967743074894983E-4 1.0522479663825837 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.656213371599502E-5 2 0.0 0.0 0.0 0.0 5.656213371599502E-5 3 0.0 0.0 0.0 0.0 5.656213371599502E-5 4 0.0 0.0 0.0 1.4140533428998755E-5 5.656213371599502E-5 5 0.0 0.0 0.0 1.4140533428998755E-5 7.070266714499378E-5 6 0.0 0.0 0.0 2.828106685799751E-5 9.898373400299129E-5 7 0.0 0.0 0.0 2.828106685799751E-5 9.898373400299129E-5 8 0.0 0.0 0.0 2.828106685799751E-5 1.272648008609888E-4 9 0.0 0.0 0.0 2.828106685799751E-5 1.555458677189863E-4 10 0.0 0.0 0.0 5.656213371599502E-5 1.6968640114798506E-4 11 0.0 0.0 0.0 7.070266714499378E-5 1.6968640114798506E-4 12 0.0 0.0 0.0 7.070266714499378E-5 3.252322688669714E-4 13 0.0 0.0 0.0 7.070266714499378E-5 4.2421600286996267E-4 14 0.0 0.0 0.0 8.484320057399253E-5 4.2421600286996267E-4 15 0.0 1.4140533428998755E-5 0.0 1.1312426743199004E-4 5.373402703019527E-4 16 0.0 1.4140533428998755E-5 0.0 1.555458677189863E-4 5.656213371599502E-4 17 0.0 1.4140533428998755E-5 0.0 1.555458677189863E-4 5.656213371599502E-4 18 0.0 1.4140533428998755E-5 0.0 2.2624853486398008E-4 6.080429374469465E-4 19 0.0 1.4140533428998755E-5 0.0 2.2624853486398008E-4 6.221834708759452E-4 20 0.0 1.4140533428998755E-5 0.0 3.252322688669714E-4 6.928861380209391E-4 21 0.0 2.828106685799751E-5 0.0 4.100754694409639E-4 7.635888051659328E-4 22 0.0 2.828106685799751E-5 0.0 5.79761870588949E-4 7.918698720239303E-4 23 0.0 2.828106685799751E-5 0.0 8.342914723109266E-4 8.625725391689241E-4 24 0.0 2.828106685799751E-5 0.0 0.0014140533428998756 8.767130725979229E-4 25 0.0 2.828106685799751E-5 0.0 0.0016827234780508518 8.767130725979229E-4 26 0.0 2.828106685799751E-5 0.0 0.0021069394809208144 9.332752063139179E-4 27 0.0 2.828106685799751E-5 0.0 0.00295537148666074 9.474157397429166E-4 28 0.0 2.828106685799751E-5 0.0 0.005741056572173495 9.756968066009142E-4 29 0.0 2.828106685799751E-5 0.0 0.010874070206900044 9.898373400299128E-4 30 0.0 2.828106685799751E-5 0.0 0.02012197906946523 9.898373400299128E-4 31 0.0 2.828106685799751E-5 0.0 0.04708797631856586 0.001032258940316909 32 0.0 2.828106685799751E-5 0.0 0.0818736885539028 0.0010605400071749067 33 0.0 2.828106685799751E-5 0.0 0.11974203707676147 0.0010746805406039053 34 0.0 2.828106685799751E-5 0.0 0.16114551895686982 0.0011171021408909016 35 0.0 2.828106685799751E-5 0.0 0.2112171478289544 0.0011171021408909016 36 0.0 2.828106685799751E-5 0.0 0.28579432113349384 0.0011171021408909016 37 0.0 2.828106685799751E-5 0.0 0.3985650752297589 0.0011171021408909016 38 0.0 2.828106685799751E-5 0.0 0.5611953501966737 0.0011312426743199005 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5880 0.0 28.741755 1 GGTATCA 2440 0.0 22.63671 1 TCAACGC 9240 0.0 18.000097 4 CAACGCA 9500 0.0 17.484303 5 AACGCAG 9765 0.0 17.144997 6 TATCAAC 10165 0.0 16.666058 2 ATCAACG 9995 0.0 16.64041 3 ACCGTCG 1565 0.0 15.744269 8 ATACCGT 1695 0.0 15.575304 6 TGTAGGA 3955 0.0 15.464927 2 TAGGACG 3115 0.0 15.39655 4 TACCGTC 1650 0.0 15.333198 7 GTCCTAA 1975 0.0 14.8188305 1 CGCAATA 2310 0.0 14.761775 36 ATACGAA 2325 0.0 14.571916 40 CGTCGTA 1770 0.0 14.542245 10 GTACATG 19085 0.0 14.23981 1 CCGTCGT 1785 0.0 14.050297 9 TATACTG 910 0.0 14.022053 5 TACATGG 19320 0.0 13.961526 2 >>END_MODULE