FastQCFastQC Report
Thu 2 Feb 2017
SRR4062343_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062343_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2148925
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAATC407.0340117E-427.4999415
ATGCGCG500.002581117221.9999529
GTATCAA36450.020.1604861
TAGGACG8050.019.1303944
TCGTACC600.0074140218.33329415
GTCCTAC9950.018.131881
CGCAATA6200.018.09673736
AGGACGT8750.017.5999625
CTAGCGG6700.017.0745929
TGTAGGA12150.016.6587892
GGACCGT1206.4113246E-616.4999666
GGACGTG9300.016.3225466
CGAATGC6900.016.26083443
TAGCGGC7050.016.22691730
GTAGGAC12350.016.2104933
AATACGA6850.016.05836139
ATACGAA7000.016.02853840
TCTAGCG7150.015.99996828
AACGCAG46100.015.9392296
GTATTAG6400.015.813571
Produced by FastQC (version 0.11.5)